=0x0E7ECE9C10D7B4A0
On Thu, 4 Oct 2018 at 09:40, Neil Shephard wrote:
>
>
>
> On Wed, 3 Oct 2018 at 21:08, Alex Branham wrote:
>
>>
>> Thanks. I've tried to reproduce this and am having issues still. Just to
>> confirm: you don't have any ess-* packages (ess-smart-unders
On Wed, 3 Oct 2018 at 21:08, Alex Branham wrote:
>
> Thanks. I've tried to reproduce this and am having issues still. Just to
> confirm: you don't have any ess-* packages (ess-smart-underscore,
> ess-R-object-viewer, etc) installed, either system wide or under
> ~/.emacs.d/elpa?
>
> Nope, after
Thanks for the suggestions. I do already version control some files under
~/.emacs.d (and many other ~/.* files as I'm trying to organise a dotfiles
repo for myself) such as init.el and a sub-dir 'settings' which holds
multiple files that are loaded from init.el. I opted to explicitly ignore
Timely
On Wed, 3 Oct 2018 at 20:16, Alex Branham wrote:
>
> > I've tried disabling ess-smart-underscore as Alex suggests but no joy.
>
> I'm not familiar with how this package works but disabling it (by
> removing the "require" from your init file) might not be enough. Emacs's
> package
://pgp.mit.edu/pks/lookup?op=get=0x0E7ECE9C10D7B4A0
Website - http://kimura.no-ip.info/
Photos - http://www.flickr.com/photos/slackline/
On Wed, 3 Oct 2018 at 15:44, Alex Branham wrote:
>
> On Wed 03 Oct 2018 at 05:34, Neil Shephard via ESS-help <
> ess-help@r-project.org> wrote:
&g
Hi,
I've recently encountered a problem which prevents me from using M-x R to
start an R session under Emacs. On doing so I'm informed that...
autoload-do-load: Wrong type argument: consp, nil
I'm using Emacs 25.3.1 with ESS installed from ELPA (20181003.755). I've
asked on the Emacs
Hi,
I've only just caught up on the update to ess-17.11 and went to install it
using the Gentoo Linux package management system portage.
It complained that the ess-17.11.tgz was not a compressed archive and this
appears to be true, its just a plain tar-ball.
This means that when portage trys to
On Fri, Dec 11, 2009 at 2:04 PM, Schwan s.s.hosse...@utwente.nl wrote:
Thanks, but how should I put the citation inside a data frame?
data.frame(first txt file, second txt file...)
plot (what should I insert here) type=p
And how should I load the txt files anyway inside the frame?
Vijaykumar Muley wrote:
Dear all,
Myself Vijaykumar Muley working as senior research fellow. By training I
am
a computational biologist with not a strong knowledge of statistics. I
have
done some analysis which is explained as follows,
I have 10340 (X) profiles of binary vectors
Rainer M Krug-6 wrote:
Hi
I am thinking about using Sweave more frequently, especially for
documenting code. But the syntax is slightly awkward for me (name=
... @), and I was thinking if there would be a way of importing the
type of code extracted from an Rnw file back into an Rnw
znmeb wrote:
On Mon, Feb 9, 2009 at 4:51 AM, Neil Shephard nsheph...@gmail.com wrote:
There are pro's and con's to each of the GNU/Linux flavours and its
really a
matter of deciding which you like/have invested time in learning.
Irrespective its still simple to install R from source
KMSL wrote:
I'm running R on the current version of Gentoo and had no trouble building
the complete system required. The only problem is that the current
version in portage (stable) is 2.7.2.
The latest _stable_ version (in terms of Gentoo's testing and release
policy, NOT R's) is
The preceived difficulty of installing R under whatever flavour of
GNU/Linux in this thread stems from being unfamiliar with the process of the
package management of the flavour of GNU/Linux you use (and in part by the
various distros not having the most recent version of R in their
repositories
Adam D. I. Kramer-2 wrote:
I respectfully disagree. In my repeated experience, I have seen colleagues
in industry and university simply write R off as too difficult or not
worth the effort based on purely cosmetic grounds, and then at my urging
and after some instruction embrace R as
Barry Rowlingson wrote:
2009/2/3 Neil Shephard nsheph...@gmail.com:
Again I'd disagree, perhaps the most widely used suite of software has a
very simple and clean web-site with few bells and whistles, ditto for one
of
the most popular text-editors. I am of course referring to the suite
hadley wrote:
The most useful thing (and quite rightly so) on the front page is the
link
the the FAQ which should be the starting point for anyone looking at any
new
software, and answers/explains everything thats pertinent! (At least
thats
what I read first when I start using new
Warren Young wrote:
Yyeahhh...look how much that sort of stance has helped the cause of
Linux on the desktop. World domination has been a year or two away for
the last 10 years. (Speaking as one who uses Linux every day, and used
it as his main desktop at home for many years before
Daniel Viar wrote:
I currently use R at work under the radar, but there's a chance I
could loose that access. I'd like to get our company to feel
comfortable with open source and R in particular. Does anyone have
any experience with their company's IT department and management that
Rolf Turner-3 wrote:
Is this really a violation of copyright? If I have a copy of a
journal I believe
it is within the compass of ``fair practice'' (or some such jargon)
to make a photocopy
of a particular article and give this copy to a colleague or student
for research
aiminy wrote:
de Jong, S. (1993) SIMPLS: an alternative approach to partial least
squares
regression. Chemometrics and Intelligent Laboratory Systems, 18, 251263
Yes, the publishers do, you can purchase it from
http://dx.doi.org/10.1016/0169-7439(93)85002-X
Its a shame that not all
ANJAN PURKAYASTHA wrote:
Hi,
I'm planning to access R from my perl scripts.
The only noteworthy bridge seems to be
Statistics-R-0.03http://search.cpan.org/%7Ectbrown/Statistics-R/lib/Statistics/R.pm.
Would anyone like to share their experience with this Perl-R bridge?
Irrespective of
Sake wrote:
Hi,
I'm trying to make a chromosomal map in R by using the locus. I have a
list of genes and their locus, and I want to visualise that so you can see
if there are multiple genes on a specific place on a chromosome. A example
of what I more or less want is below:
zubin-2 wrote:
Hello, I am getting requests to place our PDF slides (output from
beamer) into Microsoft Powerpoint formats (.ppt). What's the best
practice or any recommended software packages (any success with open or
commercial) that we can use to convert PDF slides into an EDITABLE
Jinsong Zhao wrote:
Hi there,
I hope to draw a plot like this:
http://www.sg-chem.net/swizard/Ru-bqdi-spectra.gif
is it possible to draw it using R?
thanks for any suggestions.
My intuition would say yes it is possible as R graphics are highly flexible.
I'm afraid I don't know
Van Patten, Isaac T wrote:
Is there an R function to generate a radar or spider graph from a table
- e.g.radar(table(x)) or some such?
And you may find this a useful site to bookmark...
http://addictedtor.free.fr/graphiques/
Neil
--
View this message in context:
You could follow the advice given when loading the library (see the code you
posted for details) and use the enhanced genetics packages to cross-validate
the results (ideally you should get the same answer).
The results not weird though.
Your working with SNPs and having a homozygote with a
I feel the discussion about ease of installation on Linux (/*NIX type
systems) isn't really relevant to the Pros and Cons of R.
The problems encountered by people are often a consequence of their lack of
knowledge/understanding of the operating system, and not a deficiency of R
itself.
Just my
Installation under Gentoo is straightforward too (emerge dev-lang/R).
Updating has never really been a problem. CRAN packages are rebuilt if
needed when updating R, and periodically all you need to do is fire up R and
use update.packages() to update any packages you've installed.
Another pro
Claire_6700 wrote:
Hello,
I need some help with the simulatedSNPs function from scrime package.
I am trying to simulate some genotype of a case/control disease locus. The
allele frequence are cases/controls
Sample cases controls
2000 .5.10
1500
Yemi Oyeyemi wrote:
Hi everyone, please I'm having problem importing data from Stata and
excel. Help me out.
Thanks
You don't provide...
a) the code that you've tried
b) the error message that relates to the problem you are having
...without these people have little information
Claire_6700 wrote:
Hello,
I am having really hard time finding a good article about simulating
genotypes of cases and controls at a disease locus using R.
if you guys can point me or guide me where i can find more information, it
will be helpful.
The popgen() package allows the
man4ish wrote:
No i am trying to install BART which is valid name , i have 30-40 times
for other packages still facing the same pblm .How can i rectify
this.Please help me out.
Rather than sending a screenshot of a terminal (and note the posting
guidelines with regards to
Hi Maura,
I'm afraid that your message below only came to me, and wasn't copied to R-help.
I'm useless at graphics in R, but I'd recommend posting exactly what
R-code that your writing, this will show what plotting commands your
using and the syntax, and will allow others to provide insightful
capture
the attention of the audience.
Maybe R can be interfaced with GL and/or Tcl/Tk.
Thanks,
Maura
On Fri, Feb 29, 2008 at 10:43 AM, Neil Shephard [EMAIL PROTECTED] wrote:
Hi Maura,
I was for sent this instead of it being sent to the list or yourself.
Neil
Hi,
I'm trying to melt() some data for subsequent cast()ing and am
encoutering errors.
The overall process requires a couple of casts()s and melt()s.
Start Session 1##
## I have the data in a (fully) melted format and can cast it fine...
norm1[1:10,]
Pool SNP
Hi Hadley,
On Thu, Feb 28, 2008 at 1:15 PM, hadley wickham [EMAIL PROTECTED] wrote:
I think the problem is that reshape adds some extra information to the
cast data.frame, but this info is no longer relevant when you've
removed some of the columns. Try as.data.frame to strip off this
Hi,
I'm scratching my head as to why I can't use the subset() command to
remove one line of data from a data frame.
There is just one row (out of 45840) that I'd like to remove and it
can be identified using
dim(raw.all.clean)
[1] 4584010
subset(raw.all.clean, Height.1 == 0 Height.2
Thanks Thierry, they do both leave me with what I expected.
On Mon, Feb 25, 2008 at 2:28 PM, ONKELINX, Thierry
[EMAIL PROTECTED] wrote:
The negation of Height.1 == 0 Height.2 == 0 was incorrect. Use
subset(raw.all.clean, !(Height.1 == 0 Height.2 == 0))
I can see clearly how this expression
On Feb 18, 2008 2:02 PM, Peter Dalgaard [EMAIL PROTECTED] wrote:
But what gave you the idea that
http://cran.r-project.org/web/packages/Views/ should work? Google seems
not to know it.
Its the target for the link to the TaskViews from
http://cran.r-project.org/web/packages/index.html (which
Neil Shephard wrote:
(Most) of this problem isn't negated when using R. Start a new job and
use the (excellent, extensible, and free) software that you've been using
for years.
Apologies for the double negative, that should have read
(Most) of this problem _is_ negated when using R
Arin Basu-3 wrote:
Comment 2:
Finally, on a minor point, why is R the statistical software being
used? SPSS is probably more widely available in the workplace –
certainly in areas of social policy etc. (Prof NB)
What struck me in the above is the probably. How probable is it,
You can also draw pedigrees using the pedtodot() function from the gap
package. It does however depend on graphviz (http://www.graphviz.org).
An article on drawing pedigrees in R is available in Bioinformatics
22(8):1013-1014 (see http://forums.gentoo.org/viewtopic-t-641204)
There _may_ also
Hi,
I'm trying to cast() some data, but keep on getting the following error...
norm.all.melted.height - transform(all.melted.height,
+ norm.height = value / ave(value,
SNP, Pool, FUN = max)
+ )
Warning messages:
1: In
On Feb 7, 2008 2:21 PM, hadley wickham [EMAIL PROTECTED] wrote:
Hi Neil,
I think your cast statement is wrong. You have
cast(norm.all.melted.height, Sample.Name + SNP + Pool ~ value, sum)
but I think you want
cast(norm.all.melted.height, Sample.Name + SNP + Pool ~ ., sum)
i.e. value
Charilaos Skiadas-3 wrote:
On Feb 5, 2008, at 10:37 AM, Monica Pisica wrote:
But perhaps I am missing something very obvious?
I thought the task views were located where they are (linked from the page
that lists packages) as they summarise the available packages for the given
topic.
and enter into dialogue with
them.
Neil
On Feb 6, 2008 12:02 PM, Charilaos Skiadas [EMAIL PROTECTED] wrote:
On Feb 6, 2008, at 6:23 AM, Neil Shephard wrote:
Charilaos Skiadas-3 wrote:
On Feb 5, 2008, at 10:37 AM, Monica Pisica wrote:
But perhaps I am missing something very obvious
You might find this article useful
Kellie B. Keeling and Robert J. Pavur, A comparative study of the
reliability of
nine statistical software packages,
Computational Statistics Data Analysis, Volume 51, Issue 8, 1 May 2007,
Pages
3811-3831.
YIHSU CHEN-3 wrote:
Dear R-user;
I recently switched from PC to MAC. Is there a compatible editor as
Win-editor with package RWinEdit for MAC?
I'd recommend using Emacs with ESS (see http://ess.r-project.org/). The
advantage of this (beyond the seamless integration) is that its
On Nov 22, 2007 4:14 PM, Gabor Grothendieck [EMAIL PROTECTED] wrote:
The SystemRequirements field on the DESCRIPTION file is used
to document the system requirements. For example, the DESCRIPTION
file for Ryacas (which requires yacas) is shown below.
Package: Ryacas
Version: 0.2-8
Date:
Hi,
I noticed recently when installing the GDD package for R under
GNU/Linux that it required the gd library (http://libgd.org/) for
generating graphics.
The resolution of this was to simply install the library on my system,
and then GDD successfully installed without any complaints.
However,
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