Re: [R] python-like dictionary for R

Thanks gang, I'll work with named vectors and concatenate as needed. Paul On Thu, Dec 23, 2010 at 7:39 AM, Seth Falcon s...@userprimary.net wrote: On Wed, Dec 22, 2010 at 7:05 PM, Martin Morgan mtmor...@fhcrc.org wrote: On 12/22/2010 05:49 PM, Paul Rigor wrote: Hi, I was wondering

[R] how to pass object members in functions

Hello, This is an R-syntax question when attempting to manipulate/access objects when passed to a function. I have a function attempting to just print values attached to an argument object. For example, printThis - function(obj, parm2, parm3) { print(obj.stuff1) print(obj.stuff2) } where

Re: [R] how to pass object members in functions

, 2010 at 4:11 AM, Barry Rowlingson b.rowling...@lancaster.ac.uk wrote: On Wed, Dec 22, 2010 at 11:20 AM, Paul Rigor pr...@ucla.edu wrote: Hello, This is an R-syntax question when attempting to manipulate/access objects when passed to a function. I have a function attempting to just print values

[R] python-like dictionary for R

Hi, I was wondering if anyone has played around this this package called rdict? It attempts to implement a hash table in R using skip lists. Just came across it while trying to look for simpler text manipulation methods: http://userprimary.net/posts/2010/05/29/rdict-skip-list-hash-table-for-R/

[R] extracting IDs from topGO results

Hello, So I'm working on extracting IDs from a topGO result object. I have a list of terms ranked by p values. However, does the result object contain indices to the original list of gene ids per go term? The documentation was a bit unclear. Thanks, Paul [[alternative HTML version

[R] extracting IDs from topGO results

Hello, So I'm working on extracting IDs from a topGO result object. I have a list of terms ranked by p values. However, does the result object contain indices to the original list of gene ids per go term? The documentation was a bit unclear. Thanks, Paul

[R] extracting IDs from topGO results

Hello, So I'm working on extracting IDs from a topGO result object. I have a list of terms ranked by p values. However, does the result object contain indices to the original list of gene ids per go term? The documentation was a bit unclear. Thanks, Paul

Re: [R] How to create a dissimilarity object

Thank you, but what about dissimilarity matrix objects? Paul On Thu, Oct 14, 2010 at 5:30 PM, Peter Langfelder peter.langfel...@gmail.com wrote: On Thu, Oct 14, 2010 at 5:21 PM, Paul Rigor (ucla) pr...@ucla.edu wrote: Hi all, I would like to use the fpc and cluster packages

[R] How to create a dissimilarity object

Hi all, I would like to use the fpc and cluster packages for clustering. However, I would like to create a custom dissimilarity object using a library in python. Has anyone attempted or know of a work-around for creating a dissimilarity object from a csv file containing pair-wise distance

Re: [R] Traversing a dendrogram object

, Paul -- Paul Rigor http://www.ics.uci.edu/~prigor [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html

[R] Traversing a dendrogram object

, Paul -- Paul Rigor http://www.ics.uci.edu/~prigor [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html

[R] Formatting data, adding column names, use reshape, a newbie question

Hi all, I'm an R novice. I have data that's already formatted as molten that reshape should be able to work with. For example, the following was read in with read.csv(filename,sep= , header=FALSE) V1 V2 V3 V4 V5 1originalbook

[R] order two dataframes by an integer column from either data frame

on data2.salary? Thanks! Paul -- Paul Rigor Pre-doctoral BIT Fellow and Graduate Student Institute for Genomics and Bioinformatics Donald Bren School of Information and Computer Sciences University of California, Irvine http://www.ics.uci.edu/~prigor [[alternative HTML version deleted

Re: [R] order two dataframes by an integer column from either data frame

Thanks, I ended up using that method! On Fri, Feb 19, 2010 at 7:53 AM, Dieter Menne dieter.me...@menne-biomed.dewrote: Paul Rigor (ucla) wrote: I have two data frames that share a common column, data1.name and data2.name. How would I be able to order the other based on an integer