[R] [R-pkgs] roxygen2

2011-07-25 Thread Peter Danenberg
Hadley Wickham refactored roxygen, making it more maintainable and robust; the changes are so significant that we decided to nominate it roxygen2: http://cran.r-project.org/web/packages/roxygen2/index.html Some highlights: * it's faster; * usage has been improved (the @usage tag should be

[R] snow: hierarchical parallelization

2010-07-22 Thread Peter Danenberg
I'm parallelizing some computation on hierarchical data, and would find it natural to do something like this (where a call to parLapply is embedded in outer call to parLapply): cl - makeCluster(rep.int('localhost', 5), type='SOCK') clusterExport(cl, 'cl') parLapply(cl,

Re: [R] Rsge: recursive parallelization

2010-04-12 Thread Peter Danenberg
Quoth Martin Morgan on Boomtime, the 29th of Discord: It seems like it would be hard to think about the tasks that are being executed, how many processes there are, how load balancing works, etc. A flat representation of our nested data is, alas, too large to contain in memory; and dynamically

[R] Rsge: recursive parallelization

2010-04-09 Thread Peter Danenberg
In principle, I'd like to be able to do something like this: sge.parLapply(seq(10), function(x) parLapply(seq(x), function(x) x^2)) In practice, however, I have to resort to acrobatics like this: sge.options(sge.remove.files=FALSE) sge.options(sge.qsub.options='-cwd -V')

Re: [R] Defective help pages

2010-02-28 Thread Peter Danenberg
As of R 2.10.0, the plain text is generated by the tools::Rd2txt function from the same source as the HTML, i.e. the parsed Rd files stored in the .rdb file in the package help directories. It looks as though ESS is the problem here, but I don't really know what it is doing that could

Re: [R] Defective help pages

2010-02-28 Thread Peter Danenberg
We don't support Cygwin builds; that could be part of your problem. The only supported builds on Windows are using MinGW. Ah; indeed, that /is/ the problem. Works fine from MinGW. If I have some time, maybe I can investigate and submit a patch. __

Re: [R] Defective help pages

2010-02-26 Thread Peter Danenberg
This seems to be plain text help, right? It is. Does the html version give the same result? Interestingly, the html seems to be whole; but it's less convenient to access from ESS, though. Do you know what program generates the plain text; and are there any options that govern where R looks

[R] Defective help pages

2010-02-24 Thread Peter Danenberg
I'm trying to diagnose a bizarre problem in which the help files invoked from R are partially defective. help(), for instance, is missing the Description, Arguments and See Also sections; as are help files for other commands (see below). I've built 2.8.1, 2.10.1 and HEAD with the same results; do

[R] ess-roxy: Roxygen support for ESS

2010-01-16 Thread Peter Danenberg
We're pleased to announce that Henning Redestig finally implemented ESS support for Roxygen: http://www.metabolome.jp/download/ess-roxy/ess-roxy.el/view ess-roxy includes paragraph fill, hiding, template generation, etc. __ R-help@r-project.org

Re: [R] List of tags in roxygen and use for S4 classes?

2009-09-07 Thread Peter Danenberg
I would also wish for a better (online) documentation, as I think the general idea of roxygen is great. I agree completely. Good call; the vignette is terse and outdated. Manuel and I are in the process of preparing a paper based on our DSC talks; that should fill in some of the details

Re: [R] how to google search for R

2008-01-21 Thread Peter Danenberg
Quoth Wensui Liu on Boomtime, Chaos 22, 3174: I really have headache when I do google search for information about R. Adding `site:r-project.org' (no quotes) will get you official docs, `site:stat.ethz.ch' will get the mailing lists; for instance: site:r-project.org markov chain or:

Re: [R] how to google search for R

2008-01-21 Thread Peter Danenberg
Quoth ronggui on Boomtime, Chaos 22, 3174: Have you tried http://www.rseek.org/ ? That's great, ronggui; looks like they do some things I tried on an ad-hoc basis: * site:r-project.org * filetype:r * etc. but save a lot of typing. Thanks.

Re: [R] Urgent : About R and 4D

2008-01-16 Thread Peter Danenberg
Quoth HAILE A. on Sweetmorn, Chaos 16, 3174: Is it possible to interface R with 4D? Thank you very much for a fast answer. Like the Law of Fives, it depends very much on the ingenuity of the user; how's that for a fast answer? __ R-help@r-project.org

Re: [R] is it safe to replace every - by = in R code?

2008-01-13 Thread Peter Danenberg
Quoth Mark Wardle on Prickle-Prickle, Chaos 14, 3174: I can see that f(b - 10) is equivalent to f(assign(b), 10)) f(assign(b, 10))? My undestanding is that assign applies to the parental environment; but the return value of assign, namely 10, is passed to f as the local variable a. The default

Re: [R] Row-Echelon Form

2007-09-14 Thread Peter Danenberg
I append the function below, along with some other simple linear-algebra functions. I never thanked you, by the way, John; have you considered incurring the overhead of producing a formal R package? Otherwise, it's worth its SLOC in gold. __