Dear All,
When I tried to run the following code (taken from the *spdplyr* package
vignettes):
library(spdplyr)
library(maptools)
data(wrld_simpl)
worldcorner <- wrld_simpl %>%
mutate(lon = coordinates(wrld_simpl)[,1], lat =
coordinates(wrld_simpl)[,2]) %>%
filter(lat < -20, lon > 60) %>%
One thing for sure: It's not the fault of R nor Rstudio (because they are
doing fine on other people's computers, mine included). You can probably
get some help on the Rstudio support forum.
On Wed, May 18, 2016 at 6:37 PM, rezvan hatami via R-help <
r-help@r-project.org> wrote:
> Hi there
> I
Installing the openbals library may help.
Shige
On Sat, Mar 15, 2014 at 12:00 PM, Jeff Newmiller
jdnew...@dcn.davis.ca.uswrote:
Comparing with an unspecified benchmark makes answering this too hard.
Following instructions in the Posting Guide will lead to more accurate Q
and A.
Note that
.
The log file is at figure/fig1.log by default in your case.
Regards,
Yihui
--
Yihui Xie xieyi...@gmail.com
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Sun, Dec 2, 2012 at 5:36 PM, Shige Song shiges
by default in your case.
Regards,
Yihui
--
Yihui Xie xieyi...@gmail.com
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Sun, Dec 2, 2012 at 5:36 PM, Shige Song shiges...@gmail.com wrote:
Easiest way: copy
I am having problem making ggplot2, tikzDevice, and knitr working together.
I used a very simple example:
---example.Rnw-
\documentclass[preview]{standalone}
\begin{document}
\begin{figure}
fig1,eval=TRUE,echo=FALSE,dev='tikz'=
library(ggplot2)
Easiest way: copy and paste the code into Rstudio and hit compile pdf.
From the command line, I believe you can do knit2pdf example.Rnw.
Shige
On Sun, Dec 2, 2012 at 6:12 PM, Duncan Murdoch murdoch.dun...@gmail.comwrote:
On 12-12-02 5:42 PM, Shige Song wrote:
I am having problem making
Dear All,
I have two questions regarding the use of the R2BayesX package for Bayesian
analysis. First, is it possible to generate predictions based on the fitted
model? According to Gelman and Hill (2007, pp. 361-363), there are at
least two ways to do this in BUGS: (1) generate additional data
Both ESS (with ess-tracebug) and StatET (an R plug-in for Eclipse) has
debugger function.
Shige
On Tue, Feb 21, 2012 at 8:16 AM, R. Michael Weylandt
michael.weyla...@gmail.com wrote:
?findLineNum in conjunction with ?setBreakpoint and ?traceback or
options(error=recover) seems like a good
Dear Jean,
That is a simple and effective solution. Thank you!
Best,
Shige
On Tue, Dec 13, 2011 at 4:16 PM, Jean V Adams jvad...@usgs.gov wrote:
Shige Song wrote on 12/12/2011 07:49:39 PM:
Dear All,
I am fitting a simple GAM model using the gam function in the mgcv
package. The only
Dear All,
I am fitting a simple GAM model using the gam function in the mgcv
package. The only independent variable is a continuous variable
representing the time of the event (in year and month) coded so that
0 represents January 1960, 1 represents February 1960, etc. Now
when I try to plot the
Hi Jason,
I would go for Zelig package to get simulated values and confidence
intervals. It can handle gee model.
Shige
On Mon, Oct 17, 2011 at 9:38 AM, JASON M. HILL jmh...@psu.edu wrote:
Hello Fellow R
Users,I have
spent the last week trying to find a work around to this problem and I
Dear All,
I am trying to use the glmmBUGS package with OpenBUGS under Linux.
Here is a short list of code I modified from the diseasemapping
package document:
library(diseasemapping)
data(popdata)
data(casedata)
model = getRates(casedata, popdata,
One thing that Linux makes trivially easy is to interpolate R with C++
through the Rcpp package. The GCC compiler collection is part of all
mainstream Linux distro. This is, however, not the case with Windows:
you may be able to do it eventually (not sure about this point), but
it takes quite some
Why don't you post the question to the RStudio support forum? The
folks there are quite responsive and very helpful.
Shige
On Fri, Mar 4, 2011 at 9:05 AM, Robert Kinley kinley_rob...@lilly.com wrote:
I really like RStudio ...
... but I wish it wouldn't automatically reload the last .RData it
Supervisory Fishery Biologist
Department of the Interior
US Fish Wildlife Service
California, USA
http://www.fws.gov/redbluff/rbdd_jsmp.aspx
- Original Message
From: Shige Song shiges...@gmail.com
To: r-help Help r-help@r-project.org
Sent: Sat, February 12, 2011 7:07:39 PM
Subject
Dear All,
I am trying to recode a variable using the functions provided by
memisc package. Actually I am following the examples on page 9-10 of
the vignette:
--
d.fig - within(d.fig,{
sev - recode(sev,
1 - 0.9,
Dear Colleagues,
In the following simple ggplot2 code:
m - ggplot(d.fig, aes(time, prob))
m + stat_summary(fun.data = median_hilow, conf.int = .95, geom =
smooth) + facet_wrap(~ Cohort, nrow=1) + coord_cartesian(ylim = c(0,
.03))
, 2010 at 6:44 AM, Shige Song shiges...@gmail.com wrote:
Dear All,
I am trying to compileinstall the package RGtk2 on my Ubuntu 10.04
box. I did not have problem with earlier versions, but with the new
version, I got the following error message
symbolic (or even hard) links, don't use GNU tar
1.24 or 1.25.
On Thu, 6 Jan 2011, Shige Song wrote:
Look forward to it.
Thanks.
Shige
On Sat, Jan 1, 2011 at 8:45 AM, Michael Lawrence
lawrence.mich...@gene.com wrote:
Please watch for 2.20.5 and let me know if it helps. Not really sure
Does iphone even support the GNU tool chain?
Shige
On Sun, Jan 2, 2011 at 9:25 PM, Ben Ward benjamin.w...@bathspa.org wrote:
On 02/01/2011 23:28, Mkip wrote:
Does anyone know if a free iphone 3G app for R is available now?
Thanks,
Matilda Gogos
I realized that r-forge has been down for a couple of days. Does
anybody know when it will come back?
Shige
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
Dear All,
I am trying to compileinstall the package RGtk2 on my Ubuntu 10.04
box. I did not have problem with earlier versions, but with the new
version, I got the following error message :
-
*
Dear All,
I am trying to plot a lattice figure and include it in a LaTeX
document via the TikZDevice package. I think the journal I am
submitting to does not like colour figure, so I need to get rid of all
the colours in the figure. If I directly generate PDF or EPS, the
option
Dear All,
I am using the effects package to produce predicted probability from
a logistic regression. The graph looks really good. I soon realized
that the y-axis is not spaced equally. For example, in my case, the
distance between 0.02 and 0.04 is much greater than that between 0.06
and 0.08. I
...@r-project.org [mailto:r-help-boun...@r-project.org]
On
Behalf Of Shige Song
Sent: November-13-10 10:14 AM
To: r-help Help
Subject: [R] Question about the effects package
Dear All,
I am using the effects package to produce predicted probability from
a logistic regression. The graph looks
the X11 display but
still cannot get the same thing from tikz output. I guess it's
something about the connection between lattice and tikz that I was
unable to identify.
Shige
On Sat, Nov 13, 2010 at 11:31 AM, David Winsemius
dwinsem...@comcast.net wrote:
On Nov 13, 2010, at 10:07 AM, Shige Song
isn't COM a Windows-only technology?
Shige
On Sat, Nov 6, 2010 at 12:12 PM, Stephen Liu sati...@yahoo.com wrote:
Hi folks,
Debian 600 64-bit
Is rcom for Linux available?
rcom
rcom: R COM Client Interface and internal COM Server
http://cran.r-project.org/web/packages/rcom/index.html
If
Dear All,
I am trying to graph a simple scatter plot where the x axis is year
and the y axis is a percentage (percentage of infant death). Instead
of plotting the raw data, I want to plot summary statistics such as
mean and median. Here is the problem: the value range of y is between
0 and 1, but
) +
scale_y_continuous(limits = c(0, .1))
where limits may be whatever you like for the y axis.
Cheers,
Josh
On Tue, Nov 2, 2010 at 6:57 AM, Shige Song shiges...@gmail.com wrote:
Dear All,
I am trying to graph a simple scatter plot where the x axis is year
and the y axis is a percentage
, use
coord_cartesian():
year.plot + stat_summary(fun.y = mean, geom = line) +
coord_cartesian(xlim = c(0, 0.1))
HTH,
Josh
On Tue, Nov 2, 2010 at 5:20 PM, Shige Song shiges...@gmail.com wrote:
Dear Josh and Abhijit,
Thanks for the help. The interesting thing is that the option limits
= c
Hi Abderrahim,
I find this book particularly helpful:
http://www.meb.ki.se/~yudpaw/likelihood/likelihood-index.htm
Shige
On Fri, Oct 1, 2010 at 12:15 PM, abderrahim youssef
abderrahim1...@googlemail.com wrote:
Dear R help list,
I am desperately looking for any reference explaining by
Michael,
Does TexMacs works with the latest R?
Shige
On Tue, Aug 3, 2010 at 1:16 AM, Michael Lachmann lachm...@eva.mpg.de wrote:
[shameless plug]
I use TeXmacs with R. You can have R in a session. And you can even insert
graphs into your session.
if that works.
On what platform would you want it to work, linux?
Michael
On 3 Aug 2010, at 1:38AM, Shige Song [via R] wrote:
Michael,
Does TexMacs works with the latest R?
Shige
On Tue, Aug 3, 2010 at 1:16 AM, Michael Lachmann [hidden email]
wrote:
[shameless plug]
I use
Dear All,
I am trying to estimate a mixed effect model with random slope with
npmlreg. To make my question clear, I use the sample data set that was
used in the vignettes (as part of the package nlme).
Dear All,
I am trying to do a Bayesian change point analysis. My dependent
variable is a proportion, so the natural choice will be a Poisson
model with offset. Now the two options for change point model with R
is MCMCpack and bcp, but neither seems to be able to handle such
model, am I right? Are
Dear All,
Since no one has answered my previous question, let me revise it a
little and ask again.
My data set contains about 10,000 women born in 60 months. The outcome
variable is a binary variable indicating whether one has certain
health problems. My hypothesis is that the 60 months in which
Dear All,
I noticed that the splines package is no longer available on CRAN.
Has it been replaced by something else? is it still available in some
other locations?
Thanks.
Shige
__
R-help@r-project.org mailing list
Dear All,
Does anyone know how to get StatET to do automatic word wrapping for
Sweave document? I am new to StatET, so please pardon me if I missed
something obvious. Many thanks.
Best,
Shige
__
R-help@r-project.org mailing list
Hi Ben,
Before you begin playing with BUGS/JAGS, there are several native R
packages that deal with a wide variety of Bayesian models that worth
considering. Among many others, I find MCMCpack, DPpackage, and
MCMCglmm very useful (and convenient).
Best,
Shige
On Tue, Apr 13, 2010 at 7:49 PM,
Dear Dieter,
That sounds like a good solution, thanks.
Shige
On Mon, Apr 12, 2010 at 2:27 AM, Dieter Menne
dieter.me...@menne-biomed.de wrote:
Shige Song wrote:
What is the preferred way to get Bayesian analysis results (such as
those from MCMCpacki, MCMCglmm, and DPpackage) into LaTeX
Dear All,
I am trying to fit a 2-level random intercept logistic regression on a
data set of 20,000 cases. The model is specified as the following:
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the
Dear All,
I am trying to fit a 2-level random intercept logistic regression on a
data set of 20,000 cases. The model is specified as the following:
m1 - glmer(inftmort ~ as.factor(cohort) + (1|code), family=binomial, data=d)
I got Warning message: In mer_finalize(ans) : false convergence (8)
difficulties
estimating this model, which makes feel that I might get some very
basic specification wrong in my R model...
Best,
Shige
On Tue, Feb 16, 2010 at 10:29 AM, Douglas Bates ba...@stat.wisc.edu wrote:
On Tue, Feb 16, 2010 at 9:05 AM, Shige Song shiges...@gmail.com wrote:
Dear All,
I am
Dear All,
I am trying to generate a LaTeX table from a small data frame using
xtable. I have three variable and 10 records. However, the resulted
LaTeX table has four columns (instead of three), of which the first
column seems to be an automatically generated ID. Is there a way to
get rid of this
Dear Livlu and Uwe,
This is exactly what I need, thanks.
Shige
On Sun, Feb 14, 2010 at 10:11 AM, Uwe Ligges
lig...@statistik.tu-dortmund.de wrote:
See ?print.xtable and its argument include.rownames.
Uwe Ligges
On 14.02.2010 16:06, Shige Song wrote:
Dear All,
I am trying to generate
Dear David,
This information is very helpful, thanks.
Best,
Shige
On Wed, Oct 28, 2009 at 10:55 AM, David Winsemius dwinsem...@comcast.netwrote:
On Oct 28, 2009, at 10:18 AM, David Winsemius wrote:
You might want to take a look at this article by WEI, PERE, KOENKER, AND
HE. Its in the
Dear Gabor,
Thanks for the suggestion. I am writing a research paper using Sweave, not
building a R package. If i understand correctly, the --no-vignettes option
does not really help in my case.
Shige
On Sun, Jul 26, 2009 at 11:56 AM, Gabor Grothendieck
ggrothendi...@gmail.com wrote:
Another
Dear All,
The mtable function in memisc package is very useful in producing
publication quality tables directly from estimated models. There are cases
where only the estimated coefficients and standard errors are needed in the
table but not the summary staitstics such as N, value of the
Dear All,
I have been using Sweave (mainly via the Sweave.sh script) and really like
it. I am working a paper (using Sweave, of course) which includes several
time-consuming computations, and it gets tedious to re-compile the whoel
thing every time I made changes. Then I discover the cacheSweave
I have been compiling R from source tar balls on Ubuntu for many years and
like the way Ubuntu manges dependency.
Best,
Shige
On Sun, Feb 8, 2009 at 3:09 PM, Dirk Eddelbuettel e...@debian.org wrote:
On 8 February 2009 at 17:27, Stavros Macrakis wrote:
| The R FAQ is very helpful about
You are probably using Windows and do not have a compatible unzip program on
your path.
Shige
On Wed, Nov 12, 2008 at 8:01 AM, Irina Ursachi
[EMAIL PROTECTED] wrote:
Dear all,
I am trying to use the function odfWeave. Unfortunately I cannot get
beyond the folllowing error message:
Error
Try Komodo Edit and SciviewsK. They work on Windows, Linux, and Mac.
Shige
On Wed, Jul 23, 2008 at 1:48 AM, Angelo Scozzarella
[EMAIL PROTECTED] wrote:
Thanks for the answers,
but I'm looking for an editor like Tinn-R.
Is there something like it for Mac?
Angelo Scozzarella
Robert,
Try Amelia, which can be used with Zelig for post-imputation estimation. I
find it a very helpful combination.
Shige
On Mon, Jun 30, 2008 at 3:02 PM, Robert A. LaBudde [EMAIL PROTECTED] wrote:
I'm looking for a package that has a start-of-the-art method of imputation
of missing
Will the use of jit improve performance of use contributed packages such as
lme4? Thanks.
Shige
On Thu, May 1, 2008 at 7:31 AM, Nelson Castillo [EMAIL PROTECTED] wrote:
On Wed, Apr 30, 2008 at 6:27 PM, Gabor Grothendieck
[EMAIL PROTECTED] wrote:
Aside from optiming your code by making use
55 matches
Mail list logo
