o read the posting guide
> > http://www.R-project.org/posting-guide.html
> > > > and provide commented, minimal, self-contained, reproducible code.
> > >
> > > __
> > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > > https://stat.e
ot this, only those ratios. Is in this
> case still p value not necessary?
>
> On Fri, 27 Sep 2019 at 23:43, Vivek Das wrote:
>
>> Ah, this is a single observation and not pvalue calculation over a
>> distribution. You don’t seem to have a spread. Here your code seemed like
ette = "jco",xlab = FALSE,ylab="cis eqtl per gene")
>
> p + stat_compare_means(comparisons=my_comparisons)
>
> I got p value 1, I am wondering does putting here p value makes sense
> because I don't have any distribution, I just have these two numbers
> on y
alue
> shown on the attached figure?
>
> Thanks
> Ana
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/pos
and practice R about how to work with it and then understand a standard
workflow used in RNA-Seq, and follow some Bioconductor tools there. You
will find your answers. Thanks
--
Vivek Das
On Fri, Jun 9, 2017 at 2:22 PM, Yogesh Gupta <yoges
This is cross posted in Biostars https://www.biostars.org/p/221116/ . I do
not see any problem with duplicate row names unless you have specific
reasons to keep them. Here you are performing with transcript ids either
with refseq or ensemble. Now every gene does not have unique transcript
ids,
talling GLIBCXX_3.4.15 on Debian 6 turns up a
> bunch of hits, so you may be able to find a work-around if necessary.
> You might also be able to download the source for an older version of
> igraph that works with your system.
>
> Sarah
>
> On Tue, Oct 25, 2016 at 6:48 P
in it bu
I having the problem. It would be kind if you can let me know how to fix
it. Thanks
http://stackoverflow.com/questions/40244946/error-with-installing-igraph-in-r-3-1-2-in-our-hpc-cluster-at-work
--
Vivek Das
[[alternative
HI,
Try to change with
plot(aggr, type=l)
see what happens?
This should work
--
Vivek Das
On Fri, Sep 12, 2014 at 10:32 AM, Angel Rodriguez
angel.rodrig...@matiainstituto.net wrote:
Dear subscribers,
I have the following
Dear Users,
I need some assistance in plotting some distribution enrichments, like I
have files with some frequency values, now I want to plot plot the
distribution of those frequencies for one sample and then on the same plot
I want to plot the next samples where the frequency comes from another
the plots in one image with different colors. Can this be done?
--
Vivek Das
On Tue, Jul 8, 2014 at 12:19 PM, jim holtman jholt...@gmail.com wrote:
Have you tried the density function:
a - read.table('/users/jim/downloads/LG_freq.txt
0.0171938 0.597619 0.999418 0.675425
0.624723 1.023 0.361899 1.23395 1.80139 1.30457 0.692972 1.42658 1280.78
76.5147 4.67875 468.667
--
Vivek Das
PhD Student in Computational Biology
Giuseppe Testa's Lab
European School of Molecular Medicine
trouble to
use different functions to use this for my working.
Anyone who can help me out with this can be of great help.
--
Vivek Das
PhD Student in Computational Biology
Giuseppe Testa's Lab
European School of Molecular Medicine
IFOM-IEO
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