Thank you for the suggestion Jim. Will try this the next time I do forest
plots.
Mary Putt, PhD, ScD
Professor of Biostatistics
Department of Biostatistics, Epidemiology & Informatics
Pereleman School of Medicine
University of Pennsylvania
215-573-7020
From: Michael Dewey
Date: Fr
turn out really well using the forestplot package.
Mary
Mary Putt, PhD, ScD
Professor of Biostatistics
Department of Biostatistics, Epidemiology & Informatics
Pereleman School of Medicine
University of Pennsylvania
215-573-7020
From: Jim Lemon
Date: Thursday, October 13, 2022 at 11:3
rt(layout.pos.row = 1,
layout.pos.col = 3))
fp_denmark
upViewport(2)
###
#Attempt 3 converting to grobs and use patchwork
###
library(ggplotify)
library(patchwork)
fpd_grob <- grid2grob(print(fp_denmark))
p1 <- grid2grob(print(fp_denmark))
p2 <- grid2grob(prin
the order of
my data is graphed alphabetical (and not what I am looking for); Asymmetric on
the left, Common in the middle, then Private on the right. Is there an easy way
to reorder this?
Thanks for any help!
Best,
Mary
[[alternative HTML version deleted]]
___
but haven't had luck. Any input
is greatly appreciated.
~Mary Ann Middleton, PhD
Here is a sample of the data I have:
Date Time date.time ms LEVEL TEMPERATURE Level_m
1 2016-05-31 15:25:00 2016-05-31 15:25:00 0 92.1767 25.171 9.401814
2 2016-05-31 16:25:00 2016-05-31 16:25:00 0 92.1498
specified seems to only work with
one variable?
Apologies if my explanation is poor, I would be more than happy to give you
more information if it would help.
I’m not sure if anything I’ve done if right or even if I’m on the right
lines…
Any help would be fantastic!
Many thanks,
Mary
that the package was actually loaded/installed. Has
anyone else had this problem and, if so, what was the fix?
Appreciatively,
Mary Pfauth
Mary Pfauth
Alaska Department of Environmental Conservation
Air Quality Division
619 E. Ship Creek Ave. #249
Anchorage, AK 99501
(907) 269-6879
mary.pfa
Sorry David,
The formula that I use here is
fmla = as.formula(Y ~ x1 + x2 + x3 + x4 + x5 + x6 + x7 + x8)
Thanks
On Sat, Oct 5, 2013 at 2:02 AM, David Winsemius dwinsem...@comcast.netwrote:
On Oct 3, 2013, at 3:07 PM, Mary Kindall wrote:
In the reproducible example given below, why I
, 2013 at 3:50 PM, Marc Schwartz marc_schwa...@me.com wrote:
On Oct 4, 2013, at 2:35 PM, peter dalgaard pda...@gmail.com wrote:
On Oct 4, 2013, at 21:16 , Mary Kindall wrote:
Y[Y mean(Y)] = 0 #My edit
Y[Y = mean(Y)] = 1 #My edit
I have no clue about gbm, but I don't think
in the predictors?
Thanks
--
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Yorktown Heights, NY
USA
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but it is no longer valid for
three classes.
yhat - pred[,2]
y = test[, -1]
plot.roc(y, yhat)
Any help will be appreciated.
Thanks
--
-
Mary Kindall
Yorktown Heights, NY
USA
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? Or it is impossible to apply rpart on my data.
I am using the following rpart command:
varimp = rpart(fmla, dat=tmpData, method = class)$variable.importance
Thanks
--
-
Mary Kindall
Yorktown Heights, NY
USA
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Hi all,
I'm a newbie to R and I can't figure out how to fix this error I keep getting
in R-studio:
error setting certificate verify locations:\n CAfile: \n CApath: none\n
Error in twInterfaceObj$doAPICall(cmd,params,GET,...) :
Error: error setting certificate verify locations:
CAfile:
CApath:
Thank you but I want to create a matrix (4,4) or (8,8) not just only a (2,2)
matrix...
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Hi, I have a question for my simulation problem:
I would like to generate a positive (or semi def positive) covariance
matrix, non singular, in wich the spectral decomposition returns me the same
values for all dimensions but differs only in eigenvectors.
Ex.
sigma
[,1] [,2]
[1,]
Sorry in the previuos message I've inverted: I would like generate ...
same eigenvectors and different eigenvalues
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I'm sorry,
I have a data set contains numbers with more decimal places, the data are
available in R data (milk).
I made a loop to get a robust correlation matrix but in calculations,
decimals cause me problems ( especially I do not know how R rounds numbers
by default) so the diagonal should
I've checked my iteration loop with other dataset, i've not problems with
integer numbers or other dataset with decimals but not all decimals dataset.
I would like it works with all type of data.
Thanks
--
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Hi,
I'm trying to calculate some functions loop, unfortunately my data are
decimal numbers that not allow me to get an accurate estimate. I do not want
to use neither round nor signif but I would prefer to have all the
information available, (the function loop is generic so you should adapt to
Hi,
I've understand how to do a permutation matrix but how I can utilize it?
I would like to have a sample of 5 unit with rotation parameters! The same
with 10 unit or 20 unit...
Thanks
--
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Hi,
I would like to replicate a sort of Montecarlo experiment:
I have to generate a random variable N(0,1) with 100 observations but I have
to contaminate this values at certain point in order to obtain different
vectors with different samples:
tab-function(N,n,E,L){
for(i in 1:100){
Ok...
so, in my model my a is built using the standard deviation of the first
principal component and b with the second, so my x and Y should be :
PCA $ scores [, 1], PCA $ scores [, 2]
but in this way I do not get out a confidence interval set on my parameters
but many ellipses.
Thanks
Mary
thank you David,
it was my first idea, but i don't know if it is right statistically
speaking!!!
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Sent from the R help mailing list archive at Nabble.com.
as X and Y into
the formula?
if a and b are scalars or vectors should be x and y scalars or vectors
too?
Thanks
Mary
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Sent from the R help mailing list archive
Hello,
I have read other posts and in part I tried to solve my problem.
I have a txt file but the values as well as being separated by many blank
spaces and lines
eg.var_a var_b var_c
1 2 4
5
of green, yellow, and red? My real data will have many more
records.
-Mary
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and provide
is what is the difference between the recursive process
while do and suggested earlier with if else?
Thank you for all precious tips suggested me
Mary
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Sent from the R help mailing
Thanks for the help,
For Mario: you're absolutely right in fact the process never stopped!!!
in particular I'm trying to do a converge process;
the robustm() function is:
function (x,z)
1# {eigen-eigen(x)
2# d-madmatrix(z)
I'm sorry
I read it again the answers and I realized that the condition
if(abs(b2[i,i]-b[i,i])=0.001) must be tested for the entire matrix and
not only for the diagonal, I misspelled.
thanks
--
View this message in context:
Thanks for the help:your reply has focused my problem
in particular I'm trying to do a converge process;
the robustm() function is:
function (x,z)
1# {eigen-eigen(x)
2# d-madmatrix(z)
##I have created this function
) and the remarket in the process creating b3, b4, etc. up to
find the minimum difference between the two matrices and returns me the
last.)
Sorry if I am not so clear, thanks
Mary
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Sent from the R
I have Statconn. Lifemetrics is a software that is written in R. I have a
problem to install this add-ins in Excel. I don't know very good r language
and so I don't know where is the error to install it.
--
View this message in context:
them back and I need to use MEGA to keep my data uniform.
Any help would be greatly appreciated
Thank you
Mary
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PLEASE do read
trying to go from POSIXct to as.ts
Any suggestions on how to tackle this would be greatly appreciated. Â
Sincerely,
Mary Ann
A sample of the data looks like this:
'data.frame': 26925 obs. of 2 variables:
$ date : POSIXct, format: 2008-07-11 21:00:00 2008-07-11 22:00:00
() to generate
an acf of the data after the seasonal patterns and trends are stripped
( ac f ( n a.omit(x.ts.decomp$random) ) ,
which is ultimately what I need, however, that isn't solid justification for
choosing that calculation.Â
Any pointers appreciated.
Cheers,
Mary Ann
- Original
correct?
Please HELP me..
Thank you so much.
Sincerely yours,
Mary Joy Regidor
Student
MSU-IIT, Iligan City
Philippines
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I have a value
a=300
observation (x) = sample(1:50)
How to find a p-value from this. I need to show that a is different fom
mean(x).
Thanks
--
-
Mary Kindall
Yorktown Heights, NY
USA
[[alternative HTML version deleted]]
__
R
the following with errors.
write.table(x=F1.norm,file=I:/R_Work/F1/Shapiro.csv, sep=,) Error in
as.data.frame.default(x[[i]], optional = TRUE, stringsAsFactors =
stringsAsFactors) :
cannot coerce class 'htest' into a data.frame
Any suggestions appreciated.
Mary AnnÂ
F1
F1
[[alternative
Hi
I have data in the following format:
itemsperson1 person2
- - --
car honda,toyotahonda
bikesuzuki suzuki
pant Lee Levis, Lee
shirt Van_housen Hollister
house rented
, 2012 at 6:05 PM, Mary Kindall mary.kind...@gmail.com
wrote:
Thanks for reply
I wanted to have legend name with spaces. Right now I am using the
following code but it produce two legends. I have to use Gimp to cut the
redundant legend.
Your basic problem is that you're using the fill
Hi
I am plotting line chart using ggplot and want to use geom_line and
geom_point simultaneously.
I get the plot but now I have two legends. None of the legend is
representing the true values. I need the legend with shape and color both.
Thanks
con = textConnection(inputs var1var2
+ scale_x_continuous(name='Number of inputs')
g - g + scale_y_continuous('Conversion time (sec.)')
g
--
-
Mary Kindall
Yorktown Heights, NY
USA
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Custom Legend)
g
-
On Mon, Jan 16, 2012 at 6:55 PM, Felipe Carrillo
mazatlanmex...@yahoo.comwrote:
Mary:
Here's one way.
## change the variable name to whatever title you want on your legend
data = melt(data, id=inputs,variable_name=customName)
data
g - ggplot(data,aes(x
0.0022677303 0.02948625
3 300 0.0061182673 0.01739936
4 400 0.0152237225 0.02569902
5 500 0.0300215262 0.03639880
6 600 0.0597610250 0.07717765
Thanks
--
-
Mary Kindall
Yorktown Heights, NY
USA
[[alternative HTML version deleted
/55078149a733dd1a0b42a57faf847036.png
http://had.co.nz/ggplot2/graphics/90983232ced45a93d9fbbe40afffd69a.png
Thanks
On Thu, Jan 12, 2012 at 12:13 PM, Justin Haynes jto...@gmail.com wrote:
On Thu 12 Jan 2012 09:02:27 AM PST, Mary Kindall wrote:
Hi
I have a data frame in the following form. There are two groups
.
Thanks.
--
-
Mary Kindall
Yorktown Heights, NY
USA
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#extract any range from sorted table
t[order(as.numeric(t),decreasing = TRUE)][1:3]
x
5 6 4
8 5 4
I hope this helps.
Andrija
On Sun, Jan 8, 2012 at 1:48 PM, Mary Kindall mary.kind...@gmail.com
wrote:
In a frequency distribution table (bell shaped), how can we find the most
:100,5]
z = cbind(x,y) //hanging the machine
write.table(z,'out.txt)
--
-
Mary Kindall
Yorktown Heights, NY
USA
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]
z = cbind(x,y) //hanging the machine
write.table(z,'out.txt)
--
-
Mary Kindall
Yorktown Heights, NY
USA
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be
param case1
1 a
2 b,c,d
3 e
4 f
Thanks
M
--
-
Mary Kindall
Yorktown Heights, NY
USA
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at 11:26 AM, Mary Kindall mary.kind...@gmail.com
wrote:
Hi
I have a data frame with values in following format.
param case1
1 a
2 b
2 c
2 d
3 e
4 f
how to use aggregate so that it I only one row
, fill_missing_entry = 'unAvailable')
thanks
--
-
Mary Kindall
Yorktown Heights, NY
USA
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, fill_missing_entry = 'unAvailable')
1
thanks
--
-
Mary Kindall
Yorktown Heights, NY
USA
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PLEASE do read the posting guide
(DataFile, header=FALSE, fill_missing_entry = 'unAvailable')
Or remove the the complete row in which the missing entry appear.
thanks
--
-
Mary Kindall
Yorktown Heights, NY
USA
--
-
Mary Kindall
Yorktown Heights, NY
USA
[[alternative HTML version deleted
Hi
I have an organism directory that contains two folders galGal3 and hg19 and
many other files.
orgDir = '/home/mary/org'
When I try to use list.dir() function, it gives me the same answer, no
matter what is the value of full.names argument.
list.dirs(path = indexDir, full.names = FALSE)[1
) != 0)
{
file.remove(destFile)
}
}
thanks
--
-
Mary Kindall
Yorktown Heights, NY
USA
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my simple
Z test for proportions to accommodate this would be most welcome, or
alternative approaches in R.
Best regards,
Mary
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, 'inDir', files2down[i], sep='/' )
download.file(url, destfile, quiet = FALSE)
}
It works fine as long as the file is present. When the file is not present,
it exit from loop. Is there a way to continue looping if error occurs.
Thanks
--
-
Mary Kindall
Yorktown Heights, NY
USA
2011 15:07:15 Mary Kindall wrote:
I am planning to download a large number of files from some website. I
am
using the following script.
files2down = c('aaa', 'bbb', )
for (i in 1: len)
{
print(paste('downloading file', i, ' of total ', len));
url = paste
I installed some downloaded packages in R. I always do
$sudo R CMD INSTALL anRpackage.tar.gz
By default it is storing these packages into my directory
/home/mary/R/x86_64-pc-linux-gnu-library/2.13/.
However I want them to be systemwide into /usr/local/lib/R/site-library/
folder.
I tried
$sudo
can I do that.
Regards
-
M
--
-
Mary Kindall
Yorktown Heights, NY
USA
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, Mary Kindall wrote:
I have a list of txt files that I want to convert into .rdata R data
object.
filenames
1. ./file1.txt
2. ./file2.txt
3. ./file3.txt
4. ./file4.txt
5. ./file5.txt
6. ./file6.txt
7. ./file7.txt
8. ./file8.txt
9. ./file9.txt
10. ./file10.txt
I saved these files
)
Reduce(merge.all, lapply(L, function(x) aggregate(x[2], x[1], toString)))
Cheers !!!
-
M
On Tue, Jun 14, 2011 at 11:27 AM, Gabor Grothendieck
ggrothendi...@gmail.com wrote:
On Tue, Jun 14, 2011 at 11:21 AM, Mary Kindall mary.kind...@gmail.com
wrote:
I resolved it. There was a problem in type
-
5 -
-zz
6 -
- tt,uu
Basically I am trying to make a consolidated table.
Help appreciated.
Thanks
M
-
Mary Kindall
Yorktown Heights
USA
[[alternative HTML version
-
5 -
-zz
6 -
- tt,uu
Basically I am trying to make a consolidated table.
Help appreciated.
Thanks
M
-
Mary Kindall
Yorktown Heights
USA
[[alternative HTML version
NA
11 4NANA
Thanks
--
M
On Mon, Jun 13, 2011 at 6:35 PM, Dr. D. P. Kreil (Boku)
david.kr...@boku.ac.at wrote:
Hi, try
?merge
Best,
David.
On 13 June 2011 23:48, Mary Kindall mary.kind...@gmail.com wrote:
Hi R users,
I am new to R and am trying to merge
:14 PM, Dr. D. P. Kreil (Boku)
david.kr...@boku.ac.at wrote:
?write.csv
Cheers,
David.
On 14 June 2011 01:07, Mary Kindall mary.kind...@gmail.com wrote:
Thanks for reply.
The following code is working but only patially. How to get the condensed
values separated by comma.
dataframe1
Superb Gabor,
Though I dont know what is happening, but yes it is workin and without fail.
Thanks
-
M
On Mon, Jun 13, 2011 at 8:20 PM, Gabor Grothendieck ggrothendi...@gmail.com
wrote:
On Mon, Jun 13, 2011 at 5:17 PM, Mary Kindall mary.kind...@gmail.com
wrote:
Hi R users,
I am new to R
to
determine whether cluster analysis is valid for my data, I will learn R and
use it on my data.
My data are panel data consisting of 49 states and 25 years. Currently, I
am estimating models with fixed state and time effects.
Thanks for any help you can give me.
Cheers,
Mary
On Mon, May 2
Does R have the capability to perform tests for the need of clustering
analysis (e.g., in prabclus)? I am using panel data with two-way fixed
effects but am unsure about whether I should be using a cluster option as
well to estimate my model.--
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Dear All
At institutes where there are PC labs used by Masters and undergraduate
students and software is maintained /managed by a central IT services,
do you always update R every time a new version is released - around
beginning of April and October? Do you also ask them to install all
patch
Hi,
I want to use a character as below in R,
as.character(`X^`R\`S)
[1] `X^`R`S
Warning messages:
1: '\`' is an unrecognized escape in a character string
2: unrecognized escape removed from `X^`R\`S
But I found errors.
Can I use some option in as.character() to change this?
Thanks
Mary
Hi,
I want to write a long string to many lines in R, but I do not know how to
do it.
Hope to get your help.
Thanks.
Mary
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Trying to fit a model using the Surv() with a frailty term but get the
following cryptic error message:
--
Error in frailty.brent(sqrt(x), y, lower = 0) :
Ties for max(y), I surrender
Calls: runplots ... coxpenal.fit -
identical. Have changed mtry
from mtry=5 to mtry=6 successfully. Have seen same problem on both a Windows
machine and our linux system running 2.8 and 2.9.
Sample code follws.
Thanks in advance for help.
Mary
m1-as.formula(paste(as.factor(EAD)~, paste(names(clin_b)[c(5,7,10:36 )],
collapse
Hello,
I am using
Beta -integrate(dnorm,mean=0,sd=1,-Inf,2.3552)
Beta
0.9907436 with absolute error 4.2e-06
1-Beta results in an error
How can I store into Beta only .9907436?
Thank you.
Sincerely,
Mary A. Marion
__
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etc. were added by hand. I need an example of how I can
mix alphanumeric
and numeric data on output.
Can you assist? R is proving to be a really fine computational language
that is easy to use.
Thank you.
Sincerely,
Mary A. Marion
u xbar alpha zcrit zcrit2 zstatpvalue
140
, sd=15),from=75, to=225, col='orange', add=TRUE)
Thank you.
Sincerely,
Mary A. Marion
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Hello,
I have an R function which includes the statement LBAuo- -. Rather
than printing out - I want it to print out - infinity.
As of yet I have not been able to do that. I am not in a graphics
window just outputting a set of variables. Can you help?
Thanks.
Sincerely,
Mary
Hello,
I am working on using if statements. What is the error message telling
me here and how do I correct for it?
I have tried various combinations of quotes.
Thank you.
Sincerely,
Mary A. Marion
#Find critical values
crit-function(n,alpha,type)
{
if (type==twoSided)
{
alpha2=alpha/2
tL
(tresults2) - c(Statistic , Value) :
'names' attribute [2] must be the same length as the vector [1]
Am I to use c( , ) or list( , ) with a dataframe?
Thank you for your help.
Sincerely,
Mary A. Marion
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,
Mary A. Marion
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and provide commented, minimal, self-contained, reproducible code.
Hi,
I am trying to figure out the observed acceptance rate and M, using generalised
rejection sampling to generate a sample from the posterior distribution for p.
I have been told my code doesn't work because I need to take the log of the
expression for M, evaluate it and then
Hi,
I am trying to figure out the observed acceptance rate and M, using generalised
rejection sampling to generate a sample from the posterior distribution for p.
I have been told my code doesn't work because I need to take the log of the
expression for M, evaluate it and then
the x axis?
Any help would be much appreciated!
Mary
_
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$Chest,100)
hist(temp1)
But this creates a v. odd histogram so I know it must be wrong!
Would be very grateful if any one could help me out!
Mary
_
[[alternative HTML version deleted
, obviously it's far greater than that..
Louisa
Date: Tue, 7 Apr 2009 10:00:55 -0400
From: villa...@dms.umontreal.ca
To: statsstud...@hotmail.com
CC: r-help@r-project.org
Subject: Re: [R] Frequency table to histogram
Hi Mary,
Could you please provide a copy of the first few lines of your
Hello,
I have been watching my output as I create functions and do other things
in r.
One thing I don't like is the [1,] type notation at the beginning of a
line. I have been
able to change that to a number such as 1 2 etc. using
as.data.frame(object).
How can I stop the printing of a
)
colnames(x)=c(Public, Private)
as.data.frame(as.table(x))
2] add a column heading for region when I use addmargins(x)
addmargins(x)
#margin.table(x,1)
#margin.table(x,2)
Thank you.
Sincerely,
Mary A. Marion
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gradientafter R has only produced a few bootstraps.Could anyone suggest where I
am going wrong? Would greatly appreciate it!Mary
manpower-read.table(http://www.creem.st-and.ac.uk/len/classes/mt3607/data/manhours_surgical.dat;,
header=TRUE)#attach dataattach(manpower)B-999#number of data
pointsn
bootstraps.Could anyone suggest where I am going
wrong? Would greatly appreciate it!Mary
manpower-read.table(http://www.creem.st-and.ac.uk/len/classes/mt3607/data/manhours_surgical.dat;,
header=TRUE)#attach dataattach(manpower)B-999#number of data
pointsn-dim(manpower)[1]#alpha level to use
, March 19, 2008 7:36 am
Subject: RE: [PS] [R] rmultinomial() function
To: Mary Black [EMAIL PROTECTED], r-help@r-project.org
Mary --
The dmultinomial function (try ?Multinomial, noting that it is an
uppercase M) has a log option, which, if set to TRUE, returns
logarithms of
probabilities
generators is.
Any clarification would be greatly appreciated!
Thanks,
Mary
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and provide commented
I am interested in finding an R version of SAS Proc Varclus. SAS's Proc
Varclus implements an oblique cluster analysis based on principal components.
How can I find out if R has a package that runs the same algorithm implemented
in SAS Proc Varclus?
Thank you,
Mary Helen Black
Hi,
I am having trouble extracting just the year or the month or the day from a
date such as 5/7/2007 which is May 7th 2007. Is there any particular
function to extract just the year from this format?
When I am reading this data from a text file it is reading it correctly in
the same format but
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