[R] vegan metaMDS question

2009-05-27 Thread stephen sefick
, is it? Is there a reason for this, or am I missing something? best regards, -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying

Re: [R] R in Ubunto

2009-05-27 Thread stephen sefick
://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so

[R] ggplot2 adding vertical line at a certain date

2009-05-27 Thread stephen sefick
#thanks for the help -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals

Re: [R] R: Harmonic Analysis

2009-05-27 Thread stephen sefick
and not-stationary. Maura -Messaggio originale- Da: r-help-boun...@r-project.org per conto di stephen sefick Inviato: mer 27/05/2009 14.58 A: r-h...@stat.math.ethz.ch Oggetto: Re: [R] Harmonic Analysis why will a fourier transform not work? 2009/5/27 Uwe Ligges lig...@statistik.tu

Re: [R] boxplot

2009-05-27 Thread stephen sefick
and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted

Re: [R] Getting an older version of a package

2009-05-24 Thread stephen sefick
if you are on a .nix then in a terminal move to the directory that contains the tar ball of the packages and type R CMD install foo.tar.bz hope this helps Stephen Sefick On Sun, May 24, 2009 at 5:50 PM, Le Wang ruser...@gmail.com wrote: Duncan Murdoch, Many thank you for your reply. I did try

Re: [R] data summary and some automated t.tests.

2009-05-16 Thread stephen sefick
up before I can start editing/rewriting my masters work). Any thoughts would be greatly appreciated. thanks, Stephen Sefick 2009/5/16 Uwe Ligges lig...@statistik.tu-dortmund.de: stephen sefick wrote: I would like to preform a t.test to each of the measured variables (sand.silt etc.) I am

Re: [R] How to do a pretty panel plot?

2009-05-15 Thread stephen sefick
add the theme_bw argument it looks more similar to your plot, but there are some bugs. Stephen Sefick On Fri, May 15, 2009 at 6:12 AM, Jakson Alves de Aquino jaksonaqu...@gmail.com wrote: Ajay Shah wrote: Here's my best version of your code: ## Data M - structure(list(date = structure(c(13634

Re: [R] displaying results

2009-05-15 Thread stephen sefick
the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make

[R] data summary and some automated t.tests.

2009-05-15 Thread stephen sefick
, cobble, boulder.bedrock, fine.root, course.root, wood, leaf, leaf.sand, veg, pool), class = data.frame, row.names = c(NA, -100L))) -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us

Re: [R] ggplot2: annotating plot with mathematical formulae

2009-05-15 Thread stephen sefick
-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things

[R] Anova

2009-05-13 Thread stephen sefick
if there is a difference in the mean of the restored segment versus the unrestored segment (variable in x). These are repeated measures on the same treatments through time. Is there a way to control for the differences in time steps? Any ideas? thanks for the help, -- Stephen Sefick Let's not spend our

[R] adonis help - (non-parametric (permutational) manova)

2009-05-12 Thread stephen sefick
hessitate to ask. regards, -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals

Re: [R] selecting points on 3D scatterplots

2009-05-12 Thread stephen sefick
and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted

Re: [R] Citing R/Packages Question

2009-05-11 Thread stephen sefick
of a small subset of stream ecologists. Also, JSS or Rnews may not be the proper forum. We could publish a bulletin or something with all of the packages as an official document to site. Just a half fleshed idea. thanks Stephen Sefick On Mon, May 11, 2009 at 9:48 AM, Ravi Varadhan rvarad

Re: [R] problem with ggplot2 boxplot, groups and facets

2009-05-06 Thread stephen sefick
The code is real, yes. But I can not copy and paste it right out of the email into an R session and see what you are talking about. Look at ?dput as a way of posting data to the list. Stephen Sefick On Wed, May 6, 2009 at 1:52 AM, Zeljko Vrba zv...@ifi.uio.no wrote: On Tue, May 05, 2009

Re: [R] Trouble installing packages on Macintosh OS-X 10.5.6

2009-05-03 Thread stephen sefick
, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals

Re: [R] library which convert dates

2009-04-29 Thread stephen sefick
/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do

Re: [R] plotting with R

2009-04-22 Thread stephen sefick
check out ggplot2 there is an entire website devoted to the package (and a book also). The R graph gallery has graphs and the code to produce the graphs. hope this helps Stephen Sefick On Wed, Apr 22, 2009 at 9:01 AM, Christof Winter win...@biotec.tu-dresden.de wrote: Bala subramanian wrote

Re: [R] How to make a time series object from a data frame containing dates.

2009-04-22 Thread stephen sefick
look at the zoo package where there are quite a few functions to help with this. Stephen Sefick On Wed, Apr 22, 2009 at 11:09 AM, Lane, Jim jim.l...@rbc.com wrote: Hi, All I have a data frame like this. names(x) [1] month    alloc_gb One of the columns contains the dates I want to use

Re: [R] Numeric data calculated in bwplot

2009-04-17 Thread stephen sefick
library(lattice) x - bwplot(voice.part ~ height, data=singer, xlab=Height (inches)) str(x) I have not done this before, but the output of str should give you a starting point for extracting numeric values contained in one of the numerous lists. hope this helps Stephen Sefick On Fri, Apr 17

Re: [R] Create histogram from data matrix

2009-04-17 Thread stephen sefick
-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals

Re: [R] Kruskal's MDS results

2009-04-16 Thread stephen sefick
-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals

Re: [R] binary version of R 2.8.x

2009-04-08 Thread stephen sefick
, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals

Re: [R] binary version of R 2.8.x

2009-04-08 Thread stephen sefick
.  It's my first attempt to build it myself, and I have downloaded the binaries and installed it previously. --- On Wed, 4/8/09, stephen sefick ssef...@gmail.com wrote: From: stephen sefick ssef...@gmail.com Subject: Re: [R] binary version of R 2.8.x To: tomkur2006-takeh...@yahoo.com Cc

Re: [R] Convert data frame containing time stamps to time series

2009-04-08 Thread stephen sefick
-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things

Re: [R] Reshape - strange outputs

2009-04-08 Thread stephen sefick
://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large

Re: [R] Display a very low p-value

2009-04-08 Thread stephen sefick
https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so

Re: [R] Curve fitting,FDA for biological data

2009-04-03 Thread stephen sefick
What is your end goal? If it is to try and account for the variability of the timeseries you may want to look at ?spectrum If it is to model the periodicity... Stephen Sefick On Fri, Apr 3, 2009 at 11:30 AM, trias t.gkikopou...@dundee.ac.uk wrote: Here is the gif that didn't come through

[R] Conversions From standard to metric units

2009-04-03 Thread stephen sefick
to source them into R every time that I use them, but I also don't want the StreamMetabolism package to turn into StephenMisc Fuctions. Thoughts, comments, or suggestions would be appreciated. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large

Re: [R] Plotting a time series

2009-04-01 Thread stephen sefick
-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about

Re: [R] Scatter plot

2009-04-01 Thread stephen sefick
+rnorm(100) y - 1:100 z - data.frame(x,y) reg.line(y=y,x=x,data=z) try this - as an aside does anyone know how to take the x and y out of quotes. What can I do differently hope this helps Stephen Sefick On Wed, Apr 1, 2009 at 9:41 PM, Peter Alspach palsp...@hortresearch.co.nz wrote: Tena koe

[R] Upgrade through the R interface?

2009-03-31 Thread stephen sefick
Why can we not update R through a update.version() command from within R? This may be my ignorance about how software distribution works, but I was interested. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do

Re: [R] labeling panels in lattice plots

2009-03-31 Thread stephen sefick
would you mind creating a dummy data.frame or maybe dput() a smaller subset of the data frame? thanks Stephen Sefick On Tue, Mar 31, 2009 at 9:28 AM, steve_fried...@nps.gov wrote: I am using windows XP with R 2.8.1 I am generating a lattice plot of annual rain patterns using the following

Re: [R] Upgrade through the R interface?

2009-03-31 Thread stephen sefick
, Stephen Sefick On Tue, Mar 31, 2009 at 9:58 AM, Duncan Murdoch murd...@stats.uwo.ca wrote: On 3/31/2009 9:37 AM, stephen sefick wrote: Why can we not update R through a update.version() command from within R?  This may be my ignorance about how software distribution works, but I was interested

Re: [R] R: how to estimate multidimensional spectral measure of coherence

2009-03-24 Thread stephen sefick
the time series with lag. I don't know if this helps. stephen sefick On Mon, Mar 23, 2009 at 11:22 AM, mau...@alice.it wrote: Does it work on a sliding window ? Does it estimate the cospectrum (the real part) and the quadrature spectrum (complex), the coherence squared, and the phase difference

Re: [R] using wavelet transform to calculate mean frequency of a signal

2009-03-23 Thread stephen sefick
global wavelet spectrum? There is something somewhere - I just can't remember where off the top of my head. Stephen Sefick On Sun, Mar 22, 2009 at 2:21 PM, stvienna wiener stvie...@gmail.com wrote: Dear list, in short: I would like to calculate the mean frequency of a signal (e.g. time

Re: [R] how to save a plot in a given size in inches or centimeters

2009-03-23 Thread stephen sefick
isn't there a width height argument in the jpeg function? ?jpeg I am probably wrong, Stephen Sefick On Mon, Mar 23, 2009 at 10:38 AM, Lo_Lo tchiba...@hotmail.com wrote: Hi there ! I'm ploting graphics and I'd like to save them as a .jpeg file for example, but with a given size (in inches

Re: [R] how to estimate multidimensional spectral measure of coherence

2009-03-23 Thread stephen sefick
/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do

Re: [R] How to set up a function for Central Limit Theorem

2009-03-23 Thread stephen sefick
/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all

Re: [R] package sowas

2009-03-21 Thread stephen sefick
You must go to his website because it is not on CRAN. I have built it on mac osx by installing it with R CMD install. This should work on other unix platforms. Stephen Sefick On Sat, Mar 21, 2009 at 9:26 PM, mau...@alice.it wrote: I cannot find sowas package by Douglas Mauran in CRAN

Re: [R] Updated R on Debian testing machine...

2009-03-18 Thread stephen sefick
I just compile mine from scratch. Debian ppc ibook G4. I would be interested how to do this also, but the compiling is not all that difficult. If you need help send me an email. Stephen Sefick On Wed, Mar 18, 2009 at 12:44 PM, Petar Milin pmi...@ff.uns.ac.rs wrote: Hello! I recently

Re: [R] Difficulty Replacing a Row of a Data Frame

2009-03-17 Thread stephen sefick
, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems

Re: [R] R package to automatically produce combination plot?

2009-03-17 Thread stephen sefick
-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being

Re: [R] How do I set the Windows temporary directory in R?

2009-03-17 Thread stephen sefick
and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted

Re: [R] Calculate across columns

2009-03-16 Thread stephen sefick
, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals

Re: [R] Fourier Analysis Help

2009-03-13 Thread stephen sefick
commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little

Re: [R] Data Restructuring Question

2009-03-09 Thread stephen sefick
the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make

Re: [R] Fast Fourier Transform w.r.t. CreditRisk+

2009-03-05 Thread stephen sefick
-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things

Re: [R] R: flaw in CRAN package wavelets: Daubechies d8 not recognized by function wt.filter

2009-03-04 Thread stephen sefick
the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us

Re: [R] new user

2009-03-04 Thread stephen sefick
try ?abline everything should be there for you stephen sefick On Wed, Mar 4, 2009 at 11:30 PM, kris deininger kris_deinin...@hotmail.com wrote: When adding a trend line to a scatterplot (e.g. abline (90,4,col=”red”), I believe the “90” is the intercept and “4” is the slope.  How do I

Re: [R] Reshape

2009-03-03 Thread stephen sefick
, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being

Re: [R] detect outliers and high levarage points

2009-03-03 Thread stephen sefick
if you plot(model) one of the graphs should be leverage. I imagine if you str(model) you can probably pull out the leverage part of the model and just plot that. Stephen Sefick On Tue, Mar 3, 2009 at 5:36 PM, choonhong ang angie.bear...@gmail.com wrote: Hi friends, How to detect outliers

Re: [R] periodogram smoothing question

2009-03-03 Thread stephen sefick
-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We

[R] Bash script that uses an R command

2009-03-02 Thread stephen sefick
there is a better way, but I am a noob to linux and have a couple of years with R. thanks -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have

Re: [R] Bash script that uses an R command

2009-03-02 Thread stephen sefick
echo 'hal-device | grep battery.remaining_time | awk '{print$3/3600}' | awk '{print int($1)}:int(60*($1-int($1)))'` here is the final shell script is anyone is interested - this is written and working in debian linux Stephen Sefick On Mon, Mar 2, 2009 at 10:13 AM, Romain Francois romain.franc

Re: [R] Moving Average

2009-02-26 Thread stephen sefick
do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up

Re: [R] biplot.princomp - changing score labels

2009-02-25 Thread stephen sefick
code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals

[R] Debian Power PC Compile R

2009-02-20 Thread stephen sefick
I have the libx11-dev package installed through the aptitude application. This is on 5.0 power pc. What can I provide to help with this? I don't know where to begin. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all

Re: [R] Time series

2009-02-16 Thread stephen sefick
. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals

Re: [R] Whitening Time Series

2009-02-16 Thread stephen sefick
. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals

Re: [R] Outlier Detection for timeseries

2009-02-13 Thread stephen sefick
-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things

Re: [R] plotting the result of a nonlinear regression

2009-02-10 Thread stephen sefick
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us

Re: [R] What is the R equivalent of STATA's 'drop' command?

2009-02-09 Thread stephen sefick
var!=4) Is this what you want? Stephen Sefick On Mon, Feb 9, 2009 at 7:27 PM, jjh21 jjhar...@gmail.com wrote: Hello, I am trying to do some data cleaning in R. I need to drop observations that take on certain values of a variable. In STATA I might type something like: drop if variable name

Re: [R] Problems in Recommending R

2009-02-02 Thread stephen sefick
, but I may be an outlier. Because it is useful- spartanic, I believe, was used earlier and I agree. However, if the group thinks it would be a useful pursuit then I will help any way that I can. Stephen Sefick On Mon, Feb 2, 2009 at 8:41 AM, Ajay ohri ohri2...@gmail.com wrote: yes html and css

[R] reading .odf spreadsheet into R

2009-02-02 Thread stephen sefick
-- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals

Re: [R] Multidimensional scalling

2009-02-01 Thread stephen sefick
code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals

Re: [R] princomp - varimax - factanal

2009-01-30 Thread stephen sefick
://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all

Re: [R] How to collect arrays in an array?

2009-01-30 Thread stephen sefick
-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have

Re: [R] Regression

2009-01-29 Thread stephen sefick
. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals

Re: [R] Multidimensional scalling

2009-01-29 Thread stephen sefick
, tomek __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen

Re: [R] plot slideshow

2009-01-28 Thread stephen sefick
the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us

Re: [R] R compilation

2009-01-28 Thread stephen sefick
yes, first don't crosspost. It all depends on what OS .. blah, blah, blah. You must read the posting guide because it will up your chances of a reply. On Wed, Jan 28, 2009 at 1:37 PM, Attiglah, Mama mama_attig...@ssga.com wrote: Hi Mates, I have a very long R code that needs to go to

Re: [R] how to modify an R built-in function?

2009-01-26 Thread stephen sefick
, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals

Re: [R] commercially supported version of R for 64 -bit Windows?

2009-01-25 Thread stephen sefick
. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals

Re: [R] Merging tables

2009-01-20 Thread stephen sefick
. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals

Re: [R] time series contains internal NAs error

2009-01-19 Thread stephen sefick
-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things

Re: [R] Bar Plot ggplot2 Filling bars with cross hatching

2009-01-19 Thread stephen sefick
[mailto:r-help-boun...@r- project.org] On Behalf Of hadley wickham Sent: Thursday, January 15, 2009 10:55 AM To: stephen sefick Cc: R-help Subject: Re: [R] Bar Plot ggplot2 Filling bars with cross hatching Hi Stephen, #I am putting a test together for an introductory biology class and I

Re: [R] easiest way to integrate own functions on startup

2009-01-19 Thread stephen sefick
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff

Re: [R] easiest way to integrate own functions on startup

2009-01-19 Thread stephen sefick
10.3.9. The process should be the same on 10.5.4 which I also have up and running. I don't know if there is a tutor, but if you search on the internet or paste on the sig-mac list you may get some advice. BUT please don't post both places. Stephen Sefick On Mon, Jan 19, 2009 at 8:54 PM, Jörg

Re: [R] My Problem

2009-01-17 Thread stephen sefick
list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little

[R] Bar Plot ggplot2 Filling bars with cross hatching

2009-01-14 Thread stephen sefick
, geom=bar, ylab=Observed Matings, main=Counts Out of 350 Aquariums, ylim=c(0,400), fill=color)+scale_y_continuous(breaks=c(0, 70, 277, 350)) Thanks -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us

Re: [R] Bar Plot ggplot2 Filling bars with cross hatching

2009-01-14 Thread stephen sefick
Also notice that the q in Aquarium is hidden. Is there a way to make this not happen? thanks Stephen Sefick On Wed, Jan 14, 2009 at 10:18 PM, stephen sefick ssef...@gmail.com wrote: #I am putting a test together for an introductory biology class and I would like to put different cross

Re: [R] Programming Question (setting ylim generally)

2009-01-09 Thread stephen sefick
(a*1.02, col=red) } On Fri, Jan 9, 2009 at 5:38 AM, Gavin Simpson gavin.simp...@ucl.ac.uk wrote: On Fri, 2009-01-09 at 00:22 -0500, stephen sefick wrote: library(StreamMetabolism) snip / plot.e - function(b, w, x, y, z){ a - window.chron(b, w, x, y, z) low - min(b*0.98)+5 high - max(b*1.02)+5

Re: [R] Programming Question (setting ylim generally)

2009-01-09 Thread stephen sefick
PM, Mike Prager mike.pra...@noaa.gov wrote: stephen sefick ssef...@gmail.com wrote: low - min(a*0.98)-(min(a)*0.04) high - max(a*1.02)+(max(a)*0.04) plot(a, ylim=c(low, high)) Unless I am misreading your example, this can be done a little more compactly as: plot(a, ylim = range(a * 0.94

Re: [R] ATT Researchers and the New York Times

2009-01-08 Thread stephen sefick
It has worked wonders for me over the last years. It clunkily and reliably delivers messages to my inbox that are either someone elses question about R or an answer to one of my questions. clunkily yours Stephen Sefick On Thu, Jan 8, 2009 at 8:58 PM, Robert Wilkins irishhac...@gmail.com wrote

[R] Programming Question (setting ylim generally)

2009-01-08 Thread stephen sefick
*0.98)+5 high - max(b*1.02)+5 plot(a, ylim=c(low, high)) lines(a*0.98, col=blue) lines(a*1.02, col=red) } plot.e(day, 03/28/2007, 00:00:00, 03/28/2007, 23:46:00) why do the low and high objects not set the ylim of the plotting function? thanks -- Stephen Sefick Let's not spend our time

[R] Replace Function (How to replace numbers in a data frame with a specific number)

2009-01-07 Thread stephen sefick
2006/12, 190 2006/12, HC 2006/12, 198 2006/12), class = c(cast_df, data.frame))) replace(taxa, taxa0, 1) #Is preforms as I would like except that I only want to do this on columns 5:19 and I can't just use replace(taxa, taxa[,5:19]0, 1) #any suggestions Stephen Sefick -- Stephen Sefick Let's

Re: [R] Replace Function (How to replace numbers in a data frame with a specific number)

2009-01-07 Thread stephen sefick
very good thanks On Wed, Jan 7, 2009 at 11:18 AM, Henrique Dallazuanna www...@gmail.com wrote: Try this: taxa[, 5:9][taxa[,5:9] 0] - 1 On Wed, Jan 7, 2009 at 1:36 PM, stephen sefick ssef...@gmail.com wrote: taxa - (structure(list(Date = structure(c(4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L

Re: [R] inter-timeseries correlation or corrections

2009-01-07 Thread stephen sefick
-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being

Re: [R] Contributed Documentation

2009-01-06 Thread stephen sefick
https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so

Re: [R] How to extract range of colums in a data frame

2009-01-04 Thread stephen sefick
commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little

[R] Time Series Filtering

2008-12-27 Thread stephen sefick
I would like to isolate a certain frequency in a signal. Does anyone know of a package that uses wavelet filtering to accoplish this task. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up

[R] wavelet

2008-12-23 Thread stephen sefick
I would like to be able to preform a DWT and filter out everything except for 2^0 and then take that back into the time domain. Does anyone have any suggestions. I am using wmtsa to try and do this. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so

Re: [R] replacing elements of a zoo object

2008-12-17 Thread stephen sefick
]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time

Re: [R] How to iterate dataframe within a hash

2008-12-16 Thread stephen sefick
/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have

Re: [R] Sorry, I have attached the data - Here is the code that causes wavCWTPeaks error

2008-12-09 Thread stephen sefick
I'm stumped. On Tue, Dec 9, 2008 at 7:53 AM, [EMAIL PROTECTED] wrote: -Messaggio originale- Da: [EMAIL PROTECTED] Inviato: mar 09/12/2008 13.52 A: stephen sefick; Francesco Masulli; Stefano Rovetta Cc: [EMAIL PROTECTED]; [EMAIL PROTECTED]; [EMAIL PROTECTED] Oggetto: Here

Re: [R] How can I draw bars

2008-12-09 Thread stephen sefick
the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel

Re: [R] package wmtsa: wavCWTPeaks error

2008-12-08 Thread stephen sefick
/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick Let's not spend our time and resources thinking about things that are so little or so large that all they really

Re: [R] R: Morlet wavelet not supportd by wavCWTPeaks

2008-12-06 Thread stephen sefick
then it should be stated in the on-line documentation. Any suggestion ? Thank you very much. Maura -Messaggio originale- Da: stephen sefick [mailto:[EMAIL PROTECTED] Inviato: sab 06/12/2008 8.25 A: [EMAIL PROTECTED] Cc: R-help Oggetto: Re: Morlet wavelet not supportd by wavCWTPeaks

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