Re: [R] Missing dependencies in pkg installs SOLVED

hler; r-help@r-project.org Subject: Re: [R] Missing dependencies in pkg installs Checked all the permissions, and it appears that file_test returns a FALSE and system(ls -l) shows it is executable, so the problem seems to be in R and it's relationship to RHEL. I tried installing R3.3.3 to see if the

Re: [R] Missing dependencies in pkg installs

Subject: RE: [R] Missing dependencies in pkg installs I had the same thought in the shower this morning but I was disappointed to find that SElinux was disabled on the system. My next step will be to install a previous version of R on the system. My problem is that I am planning a shiny server

Re: [R] Missing dependencies in pkg installs

h Cc: Conklin, Mike (GfK); Martin Maechler; r-help@r-project.org Subject: Re: [R] Missing dependencies in pkg installs Duncan Murdoch writes: > On 22/06/2017 5:02 PM, Conklin, Mike (GfK) wrote: > > I am using debug on the .install_packages function...stepping through. > > Once t

Re: [R] Missing dependencies in pkg installs

Duncan Murdoch writes: > On 22/06/2017 5:02 PM, Conklin, Mike (GfK) wrote: > > I am using debug on the .install_packages function...stepping through. > > Once the temporary folder is created and the tar file expanded I run > > file_test and get a FALSE back indicating that the configure file

Re: [R] Missing dependencies in pkg installs

e first session I confirm the same result - the system shows the file as executable -- W. Michael Conklin EVP Marketing & Data Sciences GfK T +1 763 417 4545 | M +1 612 567 8287 -Original Message----- From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com] Sent: Thursday, June 22, 2017 3:06 PM

Re: [R] Missing dependencies in pkg installs

fK T +1 763 417 4545 | M +1 612 567 8287 -Original Message----- From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com] Sent: Thursday, June 22, 2017 3:06 PM To: Conklin, Mike (GfK); Martin Maechler; David Winsemius Cc: r-help@r-project.org Subject: Re: [R] Missing dependencies in pkg insta

Re: [R] Missing dependencies in pkg installs

murdoch.dun...@gmail.com] Sent: Thursday, June 22, 2017 11:09 AM To: Conklin, Mike (GfK); Martin Maechler; David Winsemius Cc: r-help@r-project.org Subject: Re: [R] Missing dependencies in pkg installs On 22/06/2017 11:15 AM, Conklin, Mike (GfK) wrote: Following Duncan's instructions I find that t

Re: [R] Missing dependencies in pkg installs

Marketing & Data Sciences GfK T +1 763 417 4545 | M +1 612 567 8287 -Original Message- From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com] Sent: Thursday, June 22, 2017 11:09 AM To: Conklin, Mike (GfK); Martin Maechler; David Winsemius Cc: r-help@r-project.org Subject: Re: [R]

Re: [R] Missing dependencies in pkg installs

had non-zero exit status -- W. Michael Conklin EVP Marketing & Data Sciences GfK T +1 763 417 4545 | M +1 612 567 8287 -Original Message- From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Duncan Murdoch Sent: Thursday, June 22, 2017 8:23 AM To: Martin Maechler; Dav

Re: [R] Missing dependencies in pkg installs

(GfK) Sent: Thursday, June 22, 2017 10:15 AM To: Duncan Murdoch; Martin Maechler; David Winsemius Cc: r-help@r-project.org Subject: Re: [R] Missing dependencies in pkg installs Following Duncan's instructions I find that the system and R find that configure IS executable but if trying to install

Re: [R] Missing dependencies in pkg installs

ichael Conklin EVP Marketing & Data Sciences GfK T +1 763 417 4545 | M +1 612 567 8287 -Original Message- From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Duncan Murdoch Sent: Thursday, June 22, 2017 8:23 AM To: Martin Maechler; David Winsemius Cc: r-help@r-pr

Re: [R] Missing dependencies in pkg installs

The "configure exists but is not executable" problem is somewhat common on Windows, because there's usually no such thing as an executable bit there. (Cygwin does something to fake one, but Windows generally doesn't.) If you create a tarball there by default you get no executable bits marked

Re: [R] Missing dependencies in pkg installs

> David Winsemius > on Wed, 21 Jun 2017 18:04:13 -0700 writes: >> On Jun 21, 2017, at 1:39 PM, Conklin, Mike (GfK) wrote: >> >> I have a Ubuntu server with an R installation that has 384 packages installed. We are trying

Re: [R] Missing dependencies in pkg installs

> On Jun 21, 2017, at 1:39 PM, Conklin, Mike (GfK) wrote: > > I have a Ubuntu server with an R installation that has 384 packages > installed. We are trying to replicate the system on a Red Hat Enterprise > server. I downloaded the list of packages from the Ubuntu

[R] Missing dependencies in pkg installs

I have a Ubuntu server with an R installation that has 384 packages installed. We are trying to replicate the system on a Red Hat Enterprise server. I downloaded the list of packages from the Ubuntu machine and read it into an R session on the new machine. Then I ran