You could do a weighted cox ph model, with possible haplotype
configurations for each subject weighted by their posterior
probabilities given genotype data.
Are your markers SNPs? If so you can use a utility function from the
hapassoc package to get started. For example, if your data is in a
Hello,
I was wondering if anyone knew of a function that fits haplotype data into a
cox proportional hazard model. I have computed my Haplotype frequencies
using the haplo.stats package. I have also been using the haplo.glm function
but this is a linear regression and is not quite what I am
On Oct 26, 2010, at 8:57 AM, sr500 wrote:
Hello,
I was wondering if anyone knew of a function that fits haplotype
data into a
cox proportional hazard model. I have computed my Haplotype
frequencies
using the haplo.stats package. I have also been using the haplo.glm
function
but this is
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