Re: [R] How to load fasta file with openPrimeR?

Thank you. it looks like it worked: ``` > fasta.file <- "stx.fa" > seq.df <- read_templates(fasta.file) > fasta.file [1] "stx.fa" > seq.df ID Header Group Identifier Sequence_Length Allowed_Start_fw Allowed_End_fw 1 >MW311073.1 Escheric... >MW311073.1 Esch

Re: [R] How to load fasta file with openPrimeR?

I think the problem is system.file, which is R base, but I'll go for bioconductor. Thanks On Mon, Feb 15, 2021 at 7:18 PM Bert Gunter wrote: > > As this is a Bioconductor package, why not ask on their support page: > > https://support.bioconductor.org/ > > > > Bert Gunter > > "The trouble with ha

Re: [R] How to load fasta file with openPrimeR?

> but if I give these commands to a local file: > ``` > fasta.file <- system.file("extdata", "IMGT_data", "templates", > "stx.fa", package = "openPrimeR") > fasta.file <- system.file("stx.fa", package = "openPrimeR") > ``` > where stx.fa il the file I wanted to open and that is pres

Re: [R] How to load fasta file with openPrimeR?

As this is a Bioconductor package, why not ask on their support page: https://support.bioconductor.org/ Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Mon,

[R] How to load fasta file with openPrimeR?

Hello, I am trying to load a fast file with the package 'openPrimeR'. The manual (https://www.bioconductor.org/packages/release/bioc/vignettes/openPrimeR/inst/doc/openPrimeR_vignette.html) says to use: ``` fasta.file <- system.file("extdata", "IMGT_data", "templates", "Homo_sapiens