Re: [R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

You can define the environment variable R_DONT_USE_TK (to any value) to avoid this hang caused by code in the tkrplot package. You do not have to have an X server running if R_DONT_USE_TK is set. This will avoid potential hangs while installing the 23 packages that depend on tkrplot. tools::pack

Re: [R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

I tried this a second time, but with --no-byte-compile, and it hung with a slightly different traceback (gdb) where #0 0x7f95bc4c6689 in __fxstat64 () from /usr/lib/x86_64-linux-gnu/libc.so.6 #1 0x7f95bc497050 in opendir () from /usr/lib/x86_64-linux-gnu/libc.so.6 #2 0x7f95b935f1e0

Re: [R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

Bill-- BINGO.You have found the answer. After some testing on one of my environments where it was always hanging, connecting to the same server with an X-Sever running on my workstation did indeed allow the package to be installed. **GOOD LORD THAT’S RIDICULOUS** But at least I

Re: [R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

This is a microcosm of why installing "all CRAN" packages is a bad idea. Now extend this to the other 5% of 16000+ packages that will have unclear requirements, and when you have all those installed try to update just one of the packages because one of your users has learned of a bug in that pac

Re: [R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

I just tried installing forensim on R-devel/Ubuntu 20.04/WSL-2.0 without an X server (hence DISPLAY was not set). Loading tktcl gives a warning that Tk is not available because DISPLAY is not set. The installation hung after the byte-compile message: installing to /home/bill/R-devel/R-build/site-

Re: [R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

Message- > From: Henrik Bengtsson > Sent: Wednesday, September 29, 2021 9:43 PM > To: Brodie, Kent > Cc: r-help@r-project.org > Subject: Re: [R] Package installation help: Stuck at "** byte-compile and > prepare package for lazy loading" > > ATTENTION: This email or

Re: [R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

I just tried on an up-to-date CentOS 7 with R 4.1.1 built from source using gcc 8.3.1 (from SCL devtoolset-8; so not the default gcc 4.8.5), and it works there. If of any help, here's the output when installing to user's personal package library: > chooseCRANmirror(ind = 1) > install.packages("fo

[R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

Hey everyone! So, I've been asked by one of our researchers to install "all" cran packages on one of our servers.Yeah, it's a bit much (and clearly, not everything will install correctly due to various missing tidbits), but it will go a long way to having to constantly respond to install re

Re: [R] Package installation for 4.1 on windows.

Dear Duncan, Thank you. Indeed I did had the R_LIBS_USER env. variable defined. Best regards Witold On Mon, 7 Jun 2021 at 17:48, Duncan Murdoch wrote: > > On 07/06/2021 10:37 a.m., Witold E Wolski wrote: > > Hello, > > > > I just installed R 4.1 and now trying to update install some packages. >

Re: [R] Package installation for 4.1 on windows.

On 07/06/2021 10:37 a.m., Witold E Wolski wrote: Hello, I just installed R 4.1 and now trying to update install some packages. R version 4.1.0 (2021-05-18) -- "Camp Pontanezen" Copyright (C) 2021 The R Foundation for Statistical Computing But when installing packages I read: Installing packag

[R] Package installation for 4.1 on windows.

Hello, I just installed R 4.1 and now trying to update install some packages. R version 4.1.0 (2021-05-18) -- "Camp Pontanezen" Copyright (C) 2021 The R Foundation for Statistical Computing But when installing packages I read: Installing packages into ‘C:/Users/wolski/Documents/R/win-library/4.

Re: [R] Package installation problem

Hi John, This is a bit off-topic for this mailing list as your issue is a linux, specifically Fedora, issue, and not R. I don't use Fedora but I did a quick Google search on fedora missing package .pc file and that came back with a lot of hits. This one in particular should be a good place to

Re: [R] Package installation problem

On Fri, 29 May 2020 08:47:35 +0300 Eric Berger wrote: > Hi John, > This is a bit off-topic for this mailing list as your issue is a > linux, specifically Fedora, issue, and not R. > I don't use Fedora but I did a quick Google search on > > fedora missing package .pc file > > and that came ba

Re: [R] Package installation problem

On Fri, 29 May 2020 18:36:39 +0200 Martin Møller Skarbiniks Pedersen wrote: > sudo dnf install libcurl-devel Martin, I was going to say I had already done that more than once, using both the command line and the new "dnfdragora" package manager, but then decided, "what the heck. I'll try again."

Re: [R] Package installation problem

On Fri, 29 May 2020 at 07:03, John via R-help wrote: > I'm not certain just what this problem is. Trying to install the > "curl" package, which "tseries" wants results in the following error: > > > Package libcurl was not found in the pkg-config search path. > Perhaps you should add the dir

Re: [R] Package installation problem

The library alone is not enough... you have to have the development headers for compiling code against the library. On May 28, 2020 10:03:18 PM PDT, John via R-help wrote: >I'm not certain just what this problem is. Trying to install the >"curl" package, which "tseries" wants results in the fol

[R] Package installation problem

I'm not certain just what this problem is. Trying to install the "curl" package, which "tseries" wants results in the following error: Package libcurl was not found in the pkg-config search path. Perhaps you should add the directory containing `libcurl.pc' to the PKG_CONFIG_PATH environment

Re: [R] Errors in R package installation

On Fri, 13 Dec 2019 14:21:06 + David Stevens wrote: > ** byte-compile and prepare package for lazy loading > Fatal error: cannot open file 'C:\Users\David': No such file or > directory > > ERROR: lazy loading failed for package 'rmarkdown' Oh. Sorry, that seems to be yet another place where

Re: [R] Errors in R package installation

I started a new session and entered > rm(list=ls()) > install.packages( + c('lmerTest', 'quantreg', 'rmarkdown', 'SparseM'), + lib = .libPaths()[1L], + destdir = 'c:/myRLib' + ) And this is the result: There are binary versions available but the source versions are later: binary

Re: [R] Errors in R package installation

On Fri, 13 Dec 2019 13:19:54 + David Stevens wrote: > There are binary versions available but the source versions are > later: Okay, that would be the reason why would R on Windows try to install a source package instead of a binary package. One can also see that callr has just been succ

Re: [R] Errors in R package installation

Ivan Here's a longer list. RStudio checked for what needs updating, I select all of them, and enter. The following is the console output (FYI - I tried this in plain Rgui.exe and got the same result - I don't think it's an RStudio issue). The failed installs are toward the bottom. Best David

Re: [R] Errors in R package installation

Ivan - thanks for looking into this. My answers to your comments are below. Cheers David On 12/13/2019 1:46 AM, Ivan Krylov wrote: On Thu, 12 Dec 2019 15:48:13 + David Stevens wrote: Certain R packages will not install properly on my Windows 10 computer.

Re: [R] Errors in R package installation

On Thu, 12 Dec 2019 15:48:13 + David Stevens wrote: > Certain R packages will not install properly on my Windows 10 > computer. Certain, but not all? Which packages are you able to install on that computer? > Warning: invalid package 'C:\Users\David' > Warning: invalid package > 'Stevens\Ap

Re: [R] Errors in R package installation

And a low-tech approach: how about renaming "C:\Users\David Stevens" to "C:\Users\DavidStevens" (i.e. remove the blank in the name). A few years ago I did the equivalent "C:\Program Files" --> "C:\ProgramFiles" to avoid similar installation problems. On Thu, Dec 12, 2019 at 9:06 PM Richard M. Heib

Re: [R] Errors in R package installation

Directory and file names with embedded blanks frequently don't work on WIndows. Use the 8.3 version of the name. Since you were able to get the package onto your machine, you can install it from there. The downloaded source packages are in ‘C:\Users\David Stevens\AppData\Local\Temp\Rtmpk5

Re: [R] Errors in R package installation

Thanks Eric - I'll follow up with this link. I'd tried some of these things before but I'll keep after it. Best David On 12/12/2019 9:52 AM, Eric Berger wrote: > Actually there was progress as after it failed it removed the folder > c:/myRlib/callr, which means it had used it. Seems good. > I t

Re: [R] Errors in R package installation

Actually there was progress as after it failed it removed the folder c:/myRlib/callr, which means it had used it. Seems good. I think you might find the discussion here to be relevant https://community.rstudio.com/t/cant-install-package-remotes-when-trying-to-install-devtools/34121 Good luck, Eri

Re: [R] Errors in R package installation

Thanks Eric - I had tried this and failed with install.packages('callr',destdir='c:/myRLib') Installing package into ‘C:/myRLib’ (as ‘lib’ is unspecified) There is a binary version available but the source version is later: binary source needs_compilation callr 3.3.2 3.4.0

Re: [R] Errors in R package installation

Apparently it does not like that the fact that your user 'David Stevens' has a blank. Looking at the documentation ?install.packages it seems that if you modify your call to something like install.packages('callr',destdir='C:\tmp') you might be ok. (caveat: I did not try this) You should make th

[R] Errors in R package installation

Certain R packages will not install properly on my Windows 10 computer. For example, if I install.packages('callr') The result is trying URL 'https://cloud.r-project.org/src/contrib/callr_3.4.0.tar.gz' Content type 'application/x-gzip' length 100129 bytes (97 KB) downloaded 97 KB Warning: inva

[R] R package installation error

Hi there, I'm running R version 3.5.2 on Linux Mint. I try install.packages("hierfstat") and get this: ** byte-compile and prepare package for lazy loading Error in rbind(info, getNamespaceInfo(env, "S3methods")) : number of columns of matrices must match (see arg 2) ERROR: lazy loading faile

Re: [R] Package installation

On 09/07/2018 6:18 AM, Steven Yen wrote: I have had trouble installing packages (e.g., car, aod) in some computers (such as computers in the student lab) but no problem in my own laptop. Installation typically goes through, but after I got out and back in R (and RStudios), the error message says

[R] Package installation

I have had trouble installing packages (e.g., car, aod) in some computers (such as computers in the student lab) but no problem in my own laptop. Installation typically goes through, but after I got out and back in R (and RStudios), the error message says "packages xxx not available". That is,

Re: [R] package installation

There is the directory that the compressed file gets downloaded (Temp), and there is another directory where the the extracted files are "installed" ("library"). You can read all about this in the "R Administration and Installation Manual" that comes with R. The message about the download direct

Re: [R] package installation

ine via R-help > Sent: Tuesday, March 6, 2018 9:57 AM > To: r-help@r-project.org > Subject: [R] package installation > > Hi, When installing packages is there any preferable path. > In my case I got this message in R consol:The downloaded binary packages are > in

[R] package installation

Hi, When installing packages is there any preferable path. In my case I got this message in R consol:The downloaded binary packages are in         C: ~\ Temp \ RtmpQLTD5e \ downloaded_packages this is a temporary files that I delete every time. Is it possible to install packages in a specefic fold

Re: [R] R Package installation

parallel is R's base package and it's already installed with base R. check in below location: /usr/lib64/R/library/ Thanks, Divakar On Fri, Aug 12, 2016 at 3:53 AM, Dayalan, Nithya wrote: > Hi Team, > > We are receiving the below message while updating the package. Please help. > > > install.

Re: [R] R Package installation

This may not have anything to do with the OP's problem, but if permissions are an issue then it should be mentioned. One problem that some windows users encounter is thinking they should "Run As" administrator when installing or running R, rather than letting Windows UAE prompt them for privi

Re: [R] R Package installation

On Fri, 12 Aug 2016 06:53:03 -0400 "Dayalan, Nithya" wrote: You don't say what OS you are using, though the packages you were trying to obtain are apparently for Windows. You also don't say whether you are using something like R-Studio, or whether you are on a company network behind a firewall.

Re: [R] R Package installation

DPS | HCL @ Merck > E-mail: nithya.daya...@merck.com > Tel#+91 44 61053951| Mobile +91 8754232975 > > > -Original Message- > From: Dayalan, Nithya > Sent: Friday, August 12, 2016 10:45 AM > To: 'Jeff Newmiller'; 'r-help@R-project.org'

Re: [R] R Package installation

sion 3.2.5) > Thanks & Regards, > Nithya Dayalan > AMS MRL DPS | HCL @ Merck > E-mail: nithya.daya...@merck.com > Tel#+91 44 61053951| Mobile +91 8754232975 > > > -Original Message- > From: Dayalan, Nithya > Sent: Friday, August 12, 2016 10:45

Re: [R] R Package installation

From: David Winsemius [mailto:dwinsem...@comcast.net] Sent: Friday, August 12, 2016 10:51 AM To: Dayalan, Nithya Cc: r-help@R-project.org; Radhakrishan, Balaji Subject: Re: [R] R Package installation > On Aug 12, 2016, at 3:53 AM, Dayalan, Nithya wrote: > > Hi Team, > > We ar

Re: [R] R Package installation

ithya Sent: Friday, August 12, 2016 10:45 AM To: 'Jeff Newmiller'; 'r-help@R-project.org' Cc: Radhakrishan, Balaji Subject: RE: [R] R Package installation Yes Jeff, I tried it with 10 mirrors. Thanks & Regards, Nithya Dayalan AMS MRL DPS | HCL @ Merck E-mail: nithya.daya.

Re: [R] R Package installation

3 AM To: Dayalan, Nithya; 'r-help@R-project.org' Cc: Radhakrishan, Balaji Subject: Re: [R] R Package installation Choose A Different Mirror -- Sent from my phone. Please excuse my brevity. On August 12, 2016 3:53:03 AM PDT, "Dayalan, Nithya" wrote: >Hi Team, > >W

Re: [R] R Package installation

l: nithya.daya...@merck.com > Tel#+91 44 61053951| Mobile +91 8754232975 > > > -----Original Message----- > From: David Winsemius [mailto:dwinsem...@comcast.net] > Sent: Friday, August 12, 2016 10:51 AM > To: Dayalan, Nithya > Cc: r-help@R-project.org;

Re: [R] R Package installation

> On Aug 12, 2016, at 3:53 AM, Dayalan, Nithya wrote: > > Hi Team, > > We are receiving the below message while updating the package. Please help. > >> install.packages("parallel", lib="D:/Program Files/R/R-3.2.5/library") > Warning: unable to access index for repository > https://cran.fhcrc.

Re: [R] R Package installation

Choose A Different Mirror -- Sent from my phone. Please excuse my brevity. On August 12, 2016 3:53:03 AM PDT, "Dayalan, Nithya" wrote: >Hi Team, > >We are receiving the below message while updating the package. Please >help. > >> install.packages("parallel", lib="D:/Program >Files/R/R-3.2.5/

[R] R Package installation

Hi Team, We are receiving the below message while updating the package. Please help. > install.packages("parallel", lib="D:/Program Files/R/R-3.2.5/library") Warning: unable to access index for repository https://cran.fhcrc.org/src/contrib: cannot open URL 'https://cran.fhcrc.org/src/contrib/P

Re: [R] ReporteRs R package installation issues in R.3.2.3 (Windows)

Thanks so much for your response.. Would try that! Santosh On Mon, Feb 22, 2016 at 12:45 AM, Uwe Ligges < lig...@statistik.tu-dortmund.de> wrote: > I guess you are using a 64 bit version of R for Windows but you have only > a 32-bit installation of Java. Please install a 64-bit Java. > > Best, >

Re: [R] ReporteRs R package installation issues in R.3.2.3 (Windows)

I guess you are using a 64 bit version of R for Windows but you have only a 32-bit installation of Java. Please install a 64-bit Java. Best, Uwe Ligges On 22.02.2016 09:35, Santosh wrote: Dear Rxperts.. I tried to install ReporteRs package..in R.3.2.3 (Windows) Below are the error messages..

[R] ReporteRs R package installation issues in R.3.2.3 (Windows)

Dear Rxperts.. I tried to install ReporteRs package..in R.3.2.3 (Windows) Below are the error messages... > install.packages("ReporteRs",dep=T) trying URL ' http://cran.cnr.berkeley.edu/bin/windows/contrib/3.2/ReporteRs_0.8.2.zip' Content type 'application/zip' length 947836 bytes (925 KB) downlo

Re: [R] Package Installation: Repository for 3.2.1

On Oct 5, 2015, at 1:36 AM, Jutta Wrage wrote: > Hi! > > Guess, I got in trouble somehow now. > Not sure whether this question is placed well in this list. Do I have to ask > my question in R-SIG-MAC? > > Installed R version: 3.2.1 for OS X up to 10.8 > > I did update the package list from wi

[R] Package Installation: Repository for 3.2.1

Hi! Guess, I got in trouble somehow now. Not sure whether this question is placed well in this list. Do I have to ask my question in R-SIG-MAC? Installed R version: 3.2.1 for OS X up to 10.8 I did update the package list from within R application and installed some new package versions. Now I

Re: [R] package installation failure virtualisation environment

The log files may not have the name of the process ("R"), but only its process number. A good way to look at the log files in /var/log is to cause your 'Kill' problem then use 'ls -lstA' or 'ls -lstrA' in /var/log to see which ones changed recently. Bill Dunlap TIBCO Software wdunlap tibco.com O

Re: [R] package installation failure virtualisation environment

On 2014-10-15 15:36, William Dunlap wrote: Have you looked at recent entries in the system log files in /var/log, especially /var/log/kern.log? No such log file exist and other files in the directory do not make reference to R and any general errors (e.g. internet access). __

Re: [R] package installation failure virtualisation environment

On 2014-10-15 09:13, Sven E. Templer wrote: did you check the connection in R via for example: head(readLines("http://cran.r-project.org/web/licenses/GPL-3";)) which should yield: [1] "GNU GENERAL PUBLIC LICENSE" [2] " Version 3, 29 June 2007" [3] "" [

Re: [R] package installation failure virtualisation environment

Have you looked at recent entries in the system log files in /var/log, especially /var/log/kern.log? Bill Dunlap TIBCO Software wdunlap tibco.com On Wed, Oct 15, 2014 at 1:51 AM, wrote: > On 2014-10-14 15:40, Sven E. Templer wrote: >> >> Prevent graphic menues with: >> options(menu.graphics = F

Re: [R] package installation failure virtualisation environment

did you check the connection in R via for example: head(readLines("http://cran.r-project.org/web/licenses/GPL-3";)) which should yield: [1] "GNU GENERAL PUBLIC LICENSE" [2] " Version 3, 29 June 2007" [3] "" [4] " Copyright (C) 2007 Free Software Foundati

Re: [R] package installation failure virtualisation environment

On 2014-10-14 15:40, Sven E. Templer wrote: Prevent graphic menues with: options(menu.graphics = FALSE) Same response after a pause: 'Killed' or and define repositories: options(repos = c(CRAN = "http://cran.r-project.org";)) Same response after a pause: 'Killed' _

Re: [R] package installation failure virtualisation environment

Prevent graphic menues with: options(menu.graphics = FALSE) or and define repositories: options(repos = c(CRAN = "http://cran.r-project.org";)) On 14 October 2014 17:00, wrote: > Subscribers, > > A version of R is installed in a virtual machine, which has complete > internet access via the host.

[R] package installation failure virtualisation environment

Subscribers, A version of R is installed in a virtual machine, which has complete internet access via the host. The following error occurs when a package is selected: install.packages([packagename], dependencies=TRUE) --- Please select a CRAN mirror for use in this session --- Killed The err

Re: [R] Package installation and path.package

I am following your suggestion and move this discussion to the R-devel list. Best Simon On Sep 9, 2013, at 7:58 AM, Prof Brian Ripley wrote: > On 09/09/2013 02:09, David Winsemius wrote: >> >> On Sep 8, 2013, at 8:00 AM, Simon Zehnder wrote: >> >>> Dear R-Users and R-Devels, >>> >>> I am w

Re: [R] Package installation and path.package

On 09/09/2013 02:09, David Winsemius wrote: On Sep 8, 2013, at 8:00 AM, Simon Zehnder wrote: Dear R-Users and R-Devels, I am writing right now my own package that makes use of 'tempfile' and there within with 'path.package'. When I install it, I get the error: Error in path.package("mypacka

Re: [R] Package installation and path.package

On Sep 8, 2013, at 8:00 AM, Simon Zehnder wrote: > Dear R-Users and R-Devels, > > I am writing right now my own package that makes use of 'tempfile' and there > within with 'path.package'. When I install it, I get the error: Error in > path.package("mypackage") : none of the packages are loade

[R] Package installation and path.package

Dear R-Users and R-Devels, I am writing right now my own package that makes use of 'tempfile' and there within with 'path.package'. When I install it, I get the error: Error in path.package("mypackage") : none of the packages are loaded. I understand the error, but I would like to have a worka

Re: [R] package installation error in Mac OS X

Hi, Did you install the Xcode Developer Tools on your machine? HTH, Pascal Le 04/02/2013 03:14, londonphd a écrit : Hi, I installed R in Mac OS X, and trying to installa package. R is not allowing me to install the meboot package. Below is the exact message I got from R: installation of p

[R] package installation error in Mac OS X

Hi, I installed R in Mac OS X, and trying to installa package. R is not allowing me to install the meboot package. Below is the exact message I got from R: installation of package ‘meboot’ had non-zero exit status trying URL 'http://cran.ma.imperial.ac.uk/src/contrib/meboot_1.1-5.tar.gz' Content

Re: [R] package installation problem.

On 13.09.2012 17:14, R. Michael Weylandt wrote: Easiest answer would be to update to a more recent version of R: I'm not sure binaries are available for 2.10.z anymore. R-2.10.x is no longer supported, but binaries that were built years ago for that version of R are still available on CRAN m

Re: [R] package installation problem.

Easiest answer would be to update to a more recent version of R: I'm not sure binaries are available for 2.10.z anymore. Cheers, M On Thu, Sep 13, 2012 at 12:35 PM, bokaha guy wrote: > Dear friends from the R-community, > > I am djipie, bokaha and live in Germany. I am a student and user of R. D

[R] package installation problem.

Dear friends from the R-community, I am djipie, bokaha and live in Germany. I am a student and user of R. During the installation of the package "Metrics" I had a pronlem as shown below: > install.packages("Metrics") Warnung in install.packages("Metrics") : Argument 'lib' fehlt: nutze 'C:\Users

Re: [R] Package installation errors

On 06.09.2012 20:58, Santosh wrote: Dear Rxperts.. I am trying to install a few packages in R (version 2.14.2) on a *64-bit Window 7* workstation. Some of the errors are posted below.. Both 32-bit and 64-bit versions of R were installed. I did not get errors while installing packages through *

[R] Package installation errors

Dear Rxperts.. I am trying to install a few packages in R (version 2.14.2) on a *64-bit Window 7* workstation. Some of the errors are posted below.. Both 32-bit and 64-bit versions of R were installed. I did not get errors while installing packages through *32-bit R*, except that it could not upda

Re: [R] package installation error in unix

The error message is here: configure: error: Can't find HDF5 The hdf5 package is an interface to the HDF5 library, so you need to install hdf5 and hdf5-devel through your package manager (yum or apt-get or whatever you use to install things on your linux distro). Or you can get it straight from t

Re: [R] package installation error in unix

Hi Thanks for reply after usinginstall.packages("hdf5") I get error {Installing package(s) into ‘/home/uday/R/x86_64-pc-linux-gnu-library/2.14’ (as ‘lib’ is unspecified) trying URL 'http://cran.revolutionanalytics.com/src/contrib/hdf5_1.6.9.tar.gz' Content type 'application/x-gzip' length 50870 b

Re: [R] package installation error in unix

Hello, There is a mistake. Type > install.packages("hdf5") instead of > installed.packages("hdf5") in order to install a package. Best Regards, Passcal Le 19/07/2012 17:02, uday a écrit : Hi, Recently I have installed R in my Linux operating system , after installation I was trying to in

[R] package installation error in unix

Hi, Recently I have installed R in my Linux operating system , after installation I was trying to install some packages and I was getting error installed.packages("hdf5") { Package LibPath Version Priority Depends Imports LinkingTo Suggests Enhances OS_type License Archs Built} this

Re: [R] Package Installation in osx

This was garbled en route, but (a) Your R is far too old: please update as the posting guide asked of you. (You seem to be using a pre-release of 2.11.0.) (b) You need to set DISPLAY, as the message says. It usually is set at a Mac OS X console, so perhaps you need to ask on R-sig-mac about

[R] Package Installation in osx

Dear List: Wondering how to get around the following problem: any suggestions are welcome. Cheers, Ehsan > install.packages("geepack")Warning in install.packages("geepack") :  argument > 'lib' is missing: using '/home/grad/student/Library/R/2.11/library'--- Please > select a CRAN mirror for u

Re: [R] Package Installation

On Sun, Mar 20, 2011 at 2:42 PM, Bogaso Christofer wrote: > Dear all, can somebody guide me how to install the package RQuantLib, for > which windows binary is not available. I have tried installing it with R CMD > INSTALL in my windows vista machine (I have Rtools installed), however it > stopped

Re: [R] Package Installation

On Mon, 21 Mar 2011, Bogaso Christofer wrote: Dear all, can somebody guide me how to install the package RQuantLib, for which windows binary is not available. I have tried installing it with R CMD INSTALL in my windows vista machine (I have Rtools installed), however it stopped due to an error s

[R] Package Installation

Dear all, can somebody guide me how to install the package RQuantLib, for which windows binary is not available. I have tried installing it with R CMD INSTALL in my windows vista machine (I have Rtools installed), however it stopped due to an error saying: "compilation failed for package 'RQuantLib

Re: [R] package installation for Windows 7

On 10/07/2010 10:37 AM, David Bickel wrote: Thank you, Prof. Murdoch. I have this: > .libPaths() [1] "\\Users\\dbickel/R/win-library/2.11" "C:/R/R-2.11.1/library" That first path doesn't look like it would work in Windows: it has no drive letter, so its meaning will depend on the driver

Re: [R] package installation for Windows 7

Thank you, Prof. Murdoch. I have this: > .libPaths() [1] "\\Users\\dbickel/R/win-library/2.11" "C:/R/R-2.11.1/library" Since the following naive line in the profile failed, I just moved the new packages to the same directory as the default packages. .libPaths(c("C:/Users/dbickel/R/win-library

Re: [R] package installation for Windows 7

David Bickel wrote: Now that I have installed R outside "Program files" to get past the permissions problem, there are packages I can only access from certain working directories: setwd("U:/Calc/zTemp") # "U:" points to a USB hard drive library(splines) # ok library(locfdr) Error in l

Re: [R] package installation for Windows 7

Now that I have installed R outside "Program files" to get past the permissions problem, there are packages I can only access from certain working directories: > setwd("U:/Calc/zTemp") # "U:" points to a USB hard drive > library(splines) # ok > library(locfdr) Error in library(locfdr) : there is

Re: [R] package installation for Windows 7

On Thu, Jul 8, 2010 at 3:39 PM, Duncan Murdoch wrote: > On 08/07/2010 9:26 AM, David Bickel wrote: >> >> Yes, the User into which I logged in before launching RGui is an >> Administrator. Correct, the problem is not limited to Bioconductor packages. >> > > On Windows 7, it's not enough to have the

Re: [R] package installation for Windows 7

Thanks, Joris. Your suggestion solved the problem without requiring me to run R as an administrator. Best regards, David On 08/07/2010 8:45 AM, Joris Meys wrote: Hi, I am running Windows 7 and R 2.11.1, and everything is installing just fine for me. Did you install R in the "Program Files" f

Re: [R] package installation for Windows 7

Yes, the User into which I logged in before launching RGui is an Administrator. Correct, the problem is not limited to Bioconductor packages. David On 08/07/2010 8:55 AM, Duncan Murdoch wrote: On 08/07/2010 7:15 AM, Dave Bickel wrote: Neither biocLite nor the GUI menus can install packages o

Re: [R] package installation for Windows 7

Yes, the User into which I logged in before launching RGui is an Administrator. Correct, the problem is not limited to Bioconductor packages. David On 08/07/2010 8:55 AM, Duncan Murdoch wrote: On 08/07/2010 7:15 AM, Dave Bickel wrote: Neither biocLite nor the GUI menus can install packages on

Re: [R] package installation for Windows 7

On 08/07/2010 9:26 AM, David Bickel wrote: Yes, the User into which I logged in before launching RGui is an Administrator. Correct, the problem is not limited to Bioconductor packages. On Windows 7, it's not enough to have the user be an administrator, you need to run programs specifically

Re: [R] package installation for Windows 7

As far as my experience goes, there is no need whatsoever to run R as an administrator for installation of any package, including BioConductor, provided you stay away from the "Program Files" folder. Cheers Joris On Thu, Jul 8, 2010 at 2:55 PM, Duncan Murdoch wrote: > On 08/07/2010 7:15 AM, Dave

Re: [R] package installation for Windows 7

On 08/07/2010 7:15 AM, Dave Bickel wrote: Neither biocLite nor the GUI menus can install packages on my system. This is probably a permissions problem. Are you running R as an administrator when you try the install? If not, you won't be able to install to the default location, but you sh

Re: [R] package installation for Windows 7

Hi, I am running Windows 7 and R 2.11.1, and everything is installing just fine for me. Did you install R in the "Program Files" folder? If so, uninstall and try to re-install R in another folder (e.g. c:\R\R2.11.1\ like on my computer). I noticed in the past that the access control of Windows tre

[R] package installation for Windows 7

Neither biocLite nor the GUI menus can install packages on my system. Here is relevant output: > version _ platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 status major 2 minor 11.1 year 2010 month 05 day 31 svn rev 52157 language R version.string R version 2.11.1 (2010-05-31)

Re: [R] package installation from source

Hi Up! I finally get it work. For the record: 1. problem - spaces in path definition 2. problem - customised Rprofile.site which throws error when trying to load some packages After starting with all customised values disabled R CMD INSTALL worked as charm. Thank you very much, it is

Re: [R] package installation from source

On 10/19/2009 7:59 AM, Petr PIKAL wrote: Hi r-help-boun...@r-project.org napsal dne 19.10.2009 12:24:47: Petr PIKAL wrote: > Hi > > Duncan Murdoch napsal dne 16.10.2009 17:01:59: > > >> On 10/16/2009 9:31 AM, Petr PIKAL wrote: >> >>> Dear all >>> >>> I noticed from NEWS 2.11.0,dev >>> SIGN

Re: [R] package installation from source

Hi r-help-boun...@r-project.org napsal dne 19.10.2009 12:24:47: > Petr PIKAL wrote: > > Hi > > > > Duncan Murdoch napsal dne 16.10.2009 17:01:59: > > > > > >> On 10/16/2009 9:31 AM, Petr PIKAL wrote: > >> > >>> Dear all > >>> > >>> I noticed from NEWS 2.11.0,dev > >>> SIGNIFICANT USER-VISIBLE

Re: [R] package installation from source

Petr PIKAL wrote: Hi Duncan Murdoch napsal dne 16.10.2009 17:01:59: On 10/16/2009 9:31 AM, Petr PIKAL wrote: Dear all I noticed from NEWS 2.11.0,dev SIGNIFICANT USER-VISIBLE CHANGES o Packages must have been installed under R 2.10.0 or later, as the current help syste

Re: [R] package installation from source

Hi Duncan Murdoch napsal dne 16.10.2009 17:01:59: > On 10/16/2009 9:31 AM, Petr PIKAL wrote: > > Dear all > > > > I noticed from NEWS 2.11.0,dev > > SIGNIFICANT USER-VISIBLE CHANGES > > > > o Packages must have been installed under R 2.10.0 or later, as > > the current help syste

Re: [R] package installation from source

On 10/16/2009 9:31 AM, Petr PIKAL wrote: Dear all I noticed from NEWS 2.11.0,dev SIGNIFICANT USER-VISIBLE CHANGES o Packages must have been installed under R 2.10.0 or later, as the current help system is the only one now supported. So I tried to follow instructions in manual, Du

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