Hi,
On Wed, Apr 25, 2012 at 11:11 AM, aoife doherty
wrote:
> Thanks for replying.
>
> My problem is that i have say 50 input files, that i wanted to run a
> particular command on, get 50 output files, and then when i close R, have
> them in my directory?
>
> so for example if i say:
>
>>R
>
>>lib
On 25.04.2012 17:12, Steve Lianoglou wrote:
> Check out the vignette for the optparse library:
>
> http://cran.r-project.org/web/packages/optparse/vignettes/optparse.pdf
>
> Super helpful library if you plan on making any semi-interesting
> command line scripts w/ R.
>
> -steve
>
> On Wed, Apr 25,
Check out the vignette for the optparse library:
http://cran.r-project.org/web/packages/optparse/vignettes/optparse.pdf
Super helpful library if you plan on making any semi-interesting
command line scripts w/ R.
-steve
On Wed, Apr 25, 2012 at 6:47 AM, aoife doherty
wrote:
> Hey guys,
> Does an
Thanks for replying.
My problem is that i have say 50 input files, that i wanted to run a
particular command on, get 50 output files, and then when i close R, have
them in my directory?
so for example if i say:
>R
>library(MASS)
>list.files(pattern = ".out")
>sapply(list.files(pattern = *.ou
You can do this in bash but why not just do it in R directly? You probably need
list.files(pattern = ".out")
to get started. Then just wrap your script in a function and pass it
to (s|l)apply something like:
sapply(list.files(pattern = *.out"), function(x) wilcox.test ( ... ) )
Michael
On Wed
Hey guys,
Does anyone have an example of a REALLY simple shell script in R.
Basically i want to run this command:
library(MASS)
wilcox.test(list1,list2,paired=TRUE,alternative=c("greater"),correct=TRUE,exact=FALSE)
in a shell script something like this:
#!/bin/bash
R
library(MASS)
for i in *.ou
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