[R] WGCNA: Combining block-wise dendrograms and modules into a single figure

Hello fellow R users, I am currently learning to use R, so please forgive me if there is an obvious explanation for the following problem. My goal is to perform WGCNA on a dataset of 19776 genes, so I opted to follow the block-wise network construction (Section 2c) in the WGCNA R Tutorial by

Re: [R] WGCNA: Combining block-wise dendrograms and modules into a single figure

Hi Derek, the simple answer is that the block-specific dendrograms cannot be meaningfully combined into a single dendrogram. You have to plot them separately. You can create a multi-panel figure that shows all block dendrograms in one big figure, although with 10 blocks I would not necessarily

Re: [R] WGCNA: Combining block-wise dendrograms and modules into a single figure

Hi Peter, Thank you for your time and input on this matter. I will take your advice and reconstruct the blocks using a different maximum cutoff and plot the figures next to one another. I also wanted to thank you for creating the WGCNA package and including the section on exporting to other