Re: [R] cutreeDynamic error

2013-02-27 Thread Joanna Papakonstantinou
Thank you, Peter. This worked. I appreciate your time and help. Regards, Joanna On Wed, Feb 27, 2013 at 1:21 AM, Peter Langfelder peter.langfel...@gmail.com wrote: On Tue, Feb 26, 2013 at 8:34 AM, Joanna Papakonstantinou joanna.p...@gmail.com wrote: So I realized I had to convert my

[R] cutreeDynamic error

2013-02-26 Thread Joanna Papakonstantinou
I am having difficulty getting the dynamic tree cut package to work. Given the data table myddtable LengthPlaceColorAge5HRed224ABlue205WGreen243GRed222GBlue236WGreen255ARed194H Blue23 I created a similarity matrix using DAISY and Gower metric and specified Place and Color columns as characters

[R] cutreeDynamic error

2013-02-26 Thread Joanna Papakonstantinou
So I realized I had to convert my dd.daisy to a matrix and used: ddmatrix.daisy-as.matrix(dd.daisy) and then I passed that in as the distM: cutreeDynamic(as.hclust(dd.diana), cutHeight = NULL, minClusterSize = 2, method = hybrid, distM = ddmatrix.daisy,deepSplit = (ifelse(method==hybrid, 1,

Re: [R] cutreeDynamic error

2013-02-26 Thread Peter Langfelder
On Tue, Feb 26, 2013 at 8:34 AM, Joanna Papakonstantinou joanna.p...@gmail.com wrote: So I realized I had to convert my dd.daisy to a matrix and used: ddmatrix.daisy-as.matrix(dd.daisy) and then I passed that in as the distM: cutreeDynamic(as.hclust(dd.diana), cutHeight = NULL, minClusterSize