Re: [R] Error message

2024-03-22 Thread Ivan Krylov via R-help
В Fri, 22 Mar 2024 14:52:05 -0500 Val пишет: > : 8d5a 35f8 1ac5 cc14 a04e be5c 572f a3ad .Z5..N.\W/.. > 0010: 6210 7024 9b58 93c7 34d0 acb7 7a82 3f99 b.p$.X..4...z.?. Thank you! This doesn't look like any structured data to me. In particular, it doesn't look like something

Re: [R] Error message

2024-03-22 Thread Val
Here is the first few bytes, xxd -l 128 X1.RData : 8d5a 35f8 1ac5 cc14 a04e be5c 572f a3ad .Z5..N.\W/.. 0010: 6210 7024 9b58 93c7 34d0 acb7 7a82 3f99 b.p$.X..4...z.?. 0020: 66ce 0ebb 2057 ec36 55b4 0ece a036 695a f... W.6U6iZ 0030: 258b 3493 b661 f620 f7fe ada7 158a

Re: [R] Error message

2024-03-22 Thread Ivan Krylov via R-help
В Fri, 22 Mar 2024 14:31:17 -0500 Val пишет: > How do I get the first few bytes? What does file.info('X1.RData') say? Do you get any output if you run print(readBin('X1.RData', raw(), 128))? If this is happening on a Linux or macOS machine, the operating system command xxd -l 128 X1.RData

Re: [R] Error message

2024-03-22 Thread Val
Yes, X1.RData is large(more than 40M rows) . How do I get the first few bytes? On Fri, Mar 22, 2024 at 2:20 PM Ivan Krylov wrote: > > В Fri, 22 Mar 2024 14:02:09 -0500 > Val пишет: > > > X2.R > > load("X1.RData") > > > > I am getting this error message: > > Error in load("X1.RData", : > >

Re: [R] Error message

2024-03-22 Thread Ivan Krylov via R-help
В Fri, 22 Mar 2024 14:02:09 -0500 Val пишет: > X2.R > load("X1.RData") > > I am getting this error message: > Error in load("X1.RData", : > bad restore file magic number (file may be corrupted) .. no data > loaded. This error happens very early when R tries to load the file, right at the

[R] Error message

2024-03-22 Thread Val
Hi all, I am creating an X1.RData file using the R 4.2.2 library. x1.R save(datafilename, file="X1.RData") When I am trying to load this file using another script X2.R load("X1.RData") I am getting this error message: Error in load("X1.RData", : bad restore file magic number (file

Re: [R] Error message when using 'optim' for numerical maximum likelihood

2023-05-14 Thread Rui Barradas
Às 06:28 de 14/05/2023, iguodala edwin via R-help escreveu: Good morning, How can I resolved error message New_X with convergence 1.Thanks [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more,

Re: [R] Error message when using 'optim' for numerical maximum likelihood

2023-05-14 Thread iguodala edwin via R-help
Good morning, How can I resolved error message New_X with convergence 1.Thanks [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] error message from read.csv in loop

2021-07-10 Thread Migdonio González
Thank you very much for the clarification. I will try to use a more precise language next time. Warm regards Migdonio G. On Sat, Jul 10, 2021 at 11:30 AM Bert Gunter wrote: > "It seems that your problem is that you are using single quotes inside of > the double quotes." > > That is FALSE. From

Re: [R] error message from read.csv in loop

2021-07-10 Thread Duncan Murdoch
On 10/07/2021 12:30 p.m., Bert Gunter wrote: "It seems that your problem is that you are using single quotes inside of the double quotes." That is FALSE. From ?Quotes: "Single and double quotes delimit character constants. They can be used interchangeably but double quotes are preferred (and

Re: [R] error message from read.csv in loop

2021-07-10 Thread Bert Gunter
"It seems that your problem is that you are using single quotes inside of the double quotes." That is FALSE. From ?Quotes: "Single and double quotes delimit character constants. They can be used interchangeably but double quotes are preferred (and character constants are printed using double

Re: [R] error message from read.csv in loop

2021-07-10 Thread Migdonio González
Hello Kai, Just as you did to store the data inside of rr. Try class(rr[[1]]) or class(rr[[2]]) and so on to explore a bit more. The variable rr is a list that contains dataframes within it. To access the dataframes you must use the syntax rr[[i]] where i is the index of the element of the list

Re: [R] error message from read.csv in loop

2021-07-10 Thread Migdonio González
It seems that your problem is that you are using single quotes inside of the double quotes. This is not necessary. Here is the corrected for-loop: for (j in 1:nrow(ora)) { mycol <- ora[j,"fname"] mycsv <- paste0(mycol,".csv") rdcsv <-

Re: [R] error message from read.csv in loop

2021-07-10 Thread Rui Barradas
Hello, 1. When there are systematic errors, use ?try or, better yet, ?tryCatch. Something like the code below will create a list of errors and read in the data if none occurred. The code starts by creating an empty list for tryCatch results. It uses ?file.path instead of noquote/paste0 to

Re: [R] error message from read.csv in loop

2021-07-09 Thread Kai Yang via R-help
Hi Migdonio, I did try your code: # Initialize the rr variable as a list. rr <- as.list(rep(NA, nrow(ora))) # Run the for-loop to store all the CSVs in rr. for (j in 1:nrow(ora)) {         mycol  <- ora[j,"fname"]         mycsv  <- paste0(mycol,".csv")         rdcsv  <-

Re: [R] error message from read.csv in loop

2021-07-09 Thread Eric Berger
it complained about ASSAY_DEFINITIONS not about RESPONDENTS. Can you try with the ASSAY_DEFINITIONS file? On Fri, Jul 9, 2021 at 9:10 PM Kai Yang via R-help wrote: > Hello List, > I use for loop to read csv difference file into data frame rr. The data > frame rr will be deleted after a

[R] error message from read.csv in loop

2021-07-09 Thread Kai Yang via R-help
Hello List, I use for loop to read csv difference file into data frame rr.  The data frame rr will be deleted after a comparison and go to the next csv file.  Below is my code: for (j in 1:nrow(ora)) {   mycol  <- ora[j,"fname"]   mycsv  <- paste0(mycol,".csv'")   rdcsv  <-

Re: [R] Error Message Cannot use `+.gg()` with a single argument. Did you accidentally put + on a new line?

2020-12-19 Thread Eric Berger
As the error message says, move the '+' sign from the start of the second line to the end of the preceding line. On Sat, Dec 19, 2020 at 10:29 PM Rosato, Kyle wrote: > For some simple reason, I am unable to see the mistake: > > ggplot(filter(nlsw88, !(is.na(union))), aes(y = wage, x = union,

[R] Error Message Cannot use `+.gg()` with a single argument. Did you accidentally put + on a new line?

2020-12-19 Thread Rosato, Kyle
For some simple reason, I am unable to see the mistake: ggplot(filter(nlsw88, !(is.na(union))), aes(y = wage, x = union, fill = union)) + geom_boxplot() + facet_wrap(~idblack) [[alternative HTML version deleted]] __ R-help@r-project.org

Re: [R] Error Message With the "MCMCmixfactanal" Function

2020-11-11 Thread Jeff Newmiller
Someone may feel like tackling this anyway, but technically it is off-topic here, as this forum is about the R language rather than specific contributed packages. (http://www.r-project.org/posting-guide.html). Lookup the package DESCRIPTION file on CRAN and if it does not mention a recommended

Re: [R] Error Message With the "MCMCmixfactanal" Function

2020-11-11 Thread Bert Gunter
Please read and follow the posting guide linked below, especially this: "For questions about functions in standard packages distributed with R (see the FAQ Add-on packages in R ), ask questions on R-help. If the question relates

[R] Error Message With the "MCMCmixfactanal" Function

2020-11-11 Thread Ziad Elmously
To Whom It May Concern, In am using the script below to test the function "MAMCmixfactanal" in the package "MCMCpack". library(MCMCpack) data(PErisk) post <- MCMCmixfactanal(~courts+barb2+prsexp2+prscorr2+gdpw2, factors=1, data=PErisk, lambda.constraints=

Re: [R] Error message when using "revtools" package

2020-11-05 Thread Michael Dewey
Dear John Your .bib file did not make it through the system as only a very limited set of attachments is supported. Try to make a minimal .bib file which triggers the problem by splitting your file in half, testing each half, repeat until you get the smallest file which triggers the error.

Re: [R] Error message when using "revtools" package

2020-11-04 Thread Bert Gunter
Perhaps better suggestion: r-sig-meta-analysis ? Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) [[alternative HTML version deleted]]

[R] Error message when using "revtools" package

2020-11-04 Thread John
Hi, I tried to read a bib file by "read_bibliography" function in "revtools" package, but I got an error message but don't know how to fix it. Anyone can help? Thank you so much!! ### library(revtools) data2 <- read_bibliography("mlf_ref201105_2.bib", return_df = FALSE) ### Error

Re: [R] Error message from "patternbar_s"

2020-08-18 Thread PIKAL Petr
exchanging data without losing structure. Cheers Petr > -Original Message- > From: R-help On Behalf Of John > Sent: Monday, August 17, 2020 10:58 AM > To: r-help > Subject: [R] Error message from "patternbar_s" > > Hi , > >I got warning me

Re: [R] Error message from "patternbar_s"

2020-08-18 Thread John
priate way - > e.g. strptime or as.Date. > > BTW, "dput" result is useful for exchanging data without losing structure. > > Cheers > Petr > > > -Original Message- > > From: R-help On Behalf Of John > > Sent: Monday, August 17, 2020 10:58 A

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-23 Thread K Amoatwi
esult.md) > >> > >> it should work. > >> > >> Best, > >> Wolfgang > >> > >>> -Original Message- > >>> From: K Amoatwi [mailto:amoatwi...@gmail.com] > >>> Sent: Tuesday, 23 June, 2020 16:37 > >&

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-23 Thread Michael Dewey
Original Message- From: K Amoatwi [mailto:amoatwi...@gmail.com] Sent: Tuesday, 23 June, 2020 16:37 To: Viechtbauer, Wolfgang (SP) Cc: r-help@r-project.org Subject: Re: [R] Error message in meta-analysis package Metafor-weights ="" Dear Wolfgang, I have posted the requested information

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-23 Thread K Amoatwi
>From: K Amoatwi [mailto:amoatwi...@gmail.com] > >Sent: Tuesday, 23 June, 2020 16:37 > >To: Viechtbauer, Wolfgang (SP) > >Cc: r-help@r-project.org > >Subject: Re: [R] Error message in meta-analysis package Metafor-weights > ="" > > > >Dear Wo

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-23 Thread Viechtbauer, Wolfgang (SP)
il.com] >Sent: Tuesday, 23 June, 2020 16:37 >To: Viechtbauer, Wolfgang (SP) >Cc: r-help@r-project.org >Subject: Re: [R] Error message in meta-analysis package Metafor-weights ="" > >Dear Wolfgang, >I have posted the requested information you asked for. > >&g

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-23 Thread K Amoatwi
wrote: > Dear Kobby, > > Please post the output of sessionInfo() and class(result.md). > > Best, > Wolfgang > > >-Original Message- > >From: K Amoatwi [mailto:amoatwi...@gmail.com] > >Sent: Monday, 22 June, 2020 22:30 > >To: Viechtbauer, Wolfgang

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-23 Thread Viechtbauer, Wolfgang (SP)
Dear Kobby, Please post the output of sessionInfo() and class(result.md). Best, Wolfgang >-Original Message- >From: K Amoatwi [mailto:amoatwi...@gmail.com] >Sent: Monday, 22 June, 2020 22:30 >To: Viechtbauer, Wolfgang (SP) >Cc: r-help@r-project.org >Subject: Re:

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-22 Thread K Amoatwi
l Message- > >From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of K Amoatwi > >Sent: Tuesday, 16 June, 2020 4:50 > >To: r-help@r-project.org > >Subject: [R] Error message in meta-analysis package Metafor-weights ="" > > > >Dear All,

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-16 Thread K Amoatwi
K Amoatwi > >Sent: Tuesday, 16 June, 2020 4:50 > >To: r-help@r-project.org > >Subject: [R] Error message in meta-analysis package Metafor-weights ="" > > > >Dear All, > >I am using the example from one of the tutorial about "Metafor" package

Re: [R] Error message in meta-analysis package Metafor-weights =""

2020-06-16 Thread Viechtbauer, Wolfgang (SP)
R-help [mailto:r-help-boun...@r-project.org] On Behalf Of K Amoatwi >Sent: Tuesday, 16 June, 2020 4:50 >To: r-help@r-project.org >Subject: [R] Error message in meta-analysis package Metafor-weights ="" > >Dear All, >I am using the example from one of the tutorial ab

[R] Error message in meta-analysis package Metafor-weights =""

2020-06-16 Thread K Amoatwi
Dear All, I am using the example from one of the tutorial about "Metafor" package and "escalc" function, to learn how this package can be applied to do meta-analysi; the code and the data is directly from the tutorials but "weights=freq" option in the escalc function is given me error message This

Re: [R] Error message using boot.ci function

2020-03-30 Thread Rui Barradas
Hello, David is right, the response is named 'crp', not 'fastMM'. And there is no need to run the regression twice. Try # function to obtain MSE MSE <- function(data, indices, formula, method) { d <- data[indices, ] # allows boot to select sample fit <- lmrob(formula, data = d, method =

Re: [R] Error message using boot.ci function

2020-03-30 Thread varin sacha via R-help
Hi David, Yes, you are right but it does not change anything to my problem. According to the error message, what I understand is that there is/are NAs values in "t". Using newdata <- na.omit(Dataset) I create new dataset without missing data, so I don't understand what is going on with these

Re: [R] Error message using boot.ci function

2020-03-30 Thread David Winsemius
On 3/30/20 2:45 AM, varin sacha wrote: Many thanks David, But I am not sure the Dataset and newdata are the real problem. I have solved, at least I think so, what you were asking. Here below my new R code but still the same error message. IMHO the problem is with "boot.ci" function... # #

Re: [R] Error message using boot.ci function

2020-03-30 Thread varin sacha via R-help
Many thanks David, But I am not sure the Dataset and newdata are the real problem. I have solved, at least I think so, what you were asking. Here below my new R code but still the same error message. IMHO the problem is with "boot.ci" function... # # # # # # # # # # # # # # # # # # # ## # # #

Re: [R] Error message using boot.ci function

2020-03-29 Thread David Winsemius
On 3/28/20 12:25 PM, varin sacha via R-help wrote: Dear R-experts, Here below my "toy" reproducible example showing many warnings and an error message. What I am interested in is the error message. Of course I can access and view the results doing : summary(results$t) to give me an idea of

[R] Error message using boot.ci function

2020-03-28 Thread varin sacha via R-help
Dear R-experts, Here below my "toy" reproducible example showing many warnings and an error message. What I am interested in is the error message. Of course I can access and view the results doing : summary(results$t) to give me an idea of what is going on. But I don't know how to correct/solve

Re: [R] Error message when adding drift for Arima model

2019-05-13 Thread Michael Howell
Yes that is a little off topic but I will look into it more. Thank you very much for your help. Michael On Mon, May 13, 2019 at 11:33 AM Rui Barradas wrote: > Hello, > > Sorry for the late reply. > Inline. > > Às 17:54 de 10/05/19, Michael Howell escreveu: > > Rui, > > I'm still new to ARIMA

Re: [R] Error message when adding drift for Arima model

2019-05-13 Thread Rui Barradas
Hello, Sorry for the late reply. Inline. Às 17:54 de 10/05/19, Michael Howell escreveu: Rui, I'm still new to ARIMA forecasting but I examined the PACF and saw significant correlation at lag 2. You saw a PACF with a significant correlation at lag 2 but not at lag 1. When this happens, it

Re: [R] Error message when adding drift for Arima model

2019-05-09 Thread Rui Barradas
Why not Arima(tsdata, c(0, 0, 1), include.drift = TRUE) ? Why do you say it should be an AR(2) model? Hope this helps, Rui Barradas Às 06:43 de 10/05/19, Rui Barradas escreveu: Hello, This is just a typo, in R logical values ("true) are not character strings. You must pass FALSE (the

Re: [R] Error message when adding drift for Arima model

2019-05-09 Thread Rui Barradas
Hello, This is just a typo, in R logical values ("true) are not character strings. You must pass FALSE (the default, can be omited) or TRUE. fitdata <- Arima(tsdata, c(2, 0, 0), include.drift = TRUE) From the help page ?logical Details TRUE and FALSE are reserved words denoting logical

Re: [R] Error message when adding drift for Arima model

2019-05-09 Thread Bert Gunter
In future, always cc the list (unless it's personal,which this isn't). I have done so here. As I am largely ignorant on the subject matter, others will have to help, which is why you should cc the list. Cheers, Bert Gunter "The trouble with having an open mind is that people keep coming along

Re: [R] Error message when adding drift for Arima model

2019-05-09 Thread Bert Gunter
Please start by reading and following the posting guide linked at the bottom of this email. In particular: 1) Post in **plain text** on this plain text list so we don't get the mangled html of your post. 2) Tell us what package Arima() is in. Cheers, Bert Gunter On Thu, May 9, 2019 at 2:27

[R] Error message when adding drift for Arima model

2019-05-09 Thread Michael Howell
Hello everyone, So this is my first post to this list, I'm trying to fit an Arima (2,0,0) model and I think a drift term would help but I'm getting an error term when I'm trying to include it. Here is my data: -6.732172338 -2.868884273 -5.371585089 -6.512740463 -4.171062657 -5.738499071

[R] Error Message During ANOVA

2019-03-21 Thread Sara Ciancitto via R-help
I know this is several years later but... I ran into the same issue and was able to solve it by verifying the spacing between variables within original text file. For example, Item1, Item2, and Item3 had a single space between them while the numbers in each item had 5 spaces between them,

Re: [R] Nelson-Aalen Estimator in R: Error Message

2018-05-22 Thread A.C. van der Burgh
this information can help a little more to get an idea of the data. -Original Message- From: peter dalgaard [mailto:pda...@gmail.com] Sent: dinsdag 22 mei 2018 17:03 To: A.C. van der Burgh Cc: r-help@r-project.org Subject: Re: [R] Nelson-Aalen Estimator in R: Error Message Hard to tell from the info

Re: [R] Nelson-Aalen Estimator in R: Error Message

2018-05-22 Thread peter dalgaard
Hard to tell from the info you are giving us. I assume this regards the "mice" package? One way to proceed is to set options(error=recover) which will dump you into the browser() environment when the error occurs and you can oka around and see what the value of variables was at the point of

[R] Nelson-Aalen Estimator in R: Error Message

2018-05-22 Thread A.C. van der Burgh
Dear all, Currently, I am doing a research project about serum sodium levels and falling. I am doing my analysis in R. I am performing the multiple imputation right now. I want to perform a survival analysis later, but therefore I need to specify the Nelson-Aalen estimator. My dataset is

Re: [R] error message from sqldf

2018-03-10 Thread José María Mateos
On Sat, Mar 10, 2018 at 09:30:42PM +, Ding, Yuan Chun wrote: > chr10 <- sqldf("select * from manifest where CHR==10") > > UCN3cpg <- sqldf("select * from chr10 where MAPINFO between 5405573 and > 5407594), > overwrite = TRUE") > Error: Table chr10 exists in database, and both overwrite and

[R] error message from sqldf

2018-03-10 Thread Ding, Yuan Chun
Dear R users, I got the following error message from running sqldf code in R. do you know how to fix it? I read the sqldf package instruction and did not find a solution. Thank you, Ding chr10 <- sqldf("select * from manifest where CHR==10") UCN3cpg <- sqldf("select * from chr10 where

Re: [R] error message for function: lmer (from lme4 package)

2017-11-17 Thread David Winsemius
> snipped > > Hi, Bert, > Sorry about that! David seemed to be able to read the post since he replied. The only reason it appear readable was that you copied me as well as the list. Then HTML was still the basic format although it did npt appear that way to me since my reader could handle it

Re: [R] error message for function: lmer (from lme4 package)

2017-11-16 Thread Fix Ace via R-help
Hi, Bert, Thank you very much for the comments and suggestions! Ace On Wednesday, November 15, 2017 10:44 AM, Bert Gunter wrote: Always cc the list, which I have done here. I am not a (free) private consultant, nor do I have all the answers. Based on what you

Re: [R] error message for function: lmer (from lme4 package)

2017-11-15 Thread Bert Gunter
Always cc the list, which I have done here. I am not a (free) private consultant, nor do I have all the answers. Based on what you sent me, which is not what you have previously posted, you failed to load the lme3 package. See ?library. As for the appropriateness of your modeling, you should do

Re: [R] error message for function: lmer (from lme4 package)

2017-11-14 Thread David Winsemius
> On Nov 14, 2017, at 12:49 PM, Fix Ace wrote: > > Hi, David, > > Thank you very much for getting back to me! Sorry about the messy code > example. I am re-posting here (including the error message): > > >

Re: [R] error message for function: lmer (from lme4 package)

2017-11-14 Thread Bert Gunter
Still a complete mess! Post in **plain text**. This should be an option in your email software. Please seek local help if you cannot figure out how to do this. -- Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus

Re: [R] error message for function: lmer (from lme4 package)

2017-11-14 Thread Fix Ace via R-help
Hi, David, Thank you very much for getting back to me! Sorry about the messy code example. I am re-posting here (including the error message): > example.3=data.frame(levels=as.numeric(XXX[,c(4)]),replicate=rep(c("0","1","2","3","4","5"),3),conditions=c(rep("11",6),rep("12",6),rep("13",6)))> >

Re: [R] error message for function: lmer (from lme4 package)

2017-11-14 Thread David Winsemius
> On Nov 14, 2017, at 5:13 AM, Fix Ace via R-help wrote: > > Dear R Community, > My data have 3 conditions and each condition has 6 replicates. I am trying to > fit my data for a linear mixed model using the lmer function from lme4 > package to find the random effects of

[R] error message for function: lmer (from lme4 package)

2017-11-14 Thread Fix Ace via R-help
Dear R Community, My data have 3 conditions and each condition has 6 replicates. I am trying to fit my data for a linear mixed model using the lmer function from lme4 package to find the random effects of the replicates; however, I got the error message. Here are the example codes:

Re: [R] R] Error message "cs_lu(A) failed: near-singular A (or out of memory)"

2017-06-05 Thread Jeff Newmiller
This appears to be a case of insufficient understanding of statistics, which is not on topic for r-help. Look at how well the per-firm models would work... my guess is that some of the firms have insufficient data for useful analysis. If that is not it, consider providing a more concrete

[R] R] Error message "cs_lu(A) failed: near-singular A (or out of memory)"

2017-06-05 Thread Keilhacker, Michael
Dear Arne, thank you very much upfront for your time that you invest in answering my question. I'm using your systemfit R package to analyze if companies risk appetite has a relationship to their performance and how it evolves over time. We collected data for ca. 80 companies, from 6

Re: [R] Error Message when executing wordcloud(bd_clean)

2016-10-31 Thread Jeff Newmiller
A) Please post in plain text so your code doesn't get mangled by HTML. B) Please provide a reproducible example. [1] [2] C) RStudio is probably not the problem, but if it is then this is the wrong place to ask about that (see the RStudio website for help with that software). Simply try your

[R] Error Message when executing wordcloud(bd_clean)

2016-10-31 Thread betelguiese
Hello everybody I am using RStudio version 0.99.903, and recently installed and loaded the package wordcloud. My platform is Mac OS Sierra. I came across the following error message when I execute the command line wordcloud(bd_clean): > wordcloud(bd_clean) Error in if (min.freq > max(freq))

Re: [R] Error message in SIS package

2016-10-19 Thread Maity, Arnab K
TAMU, Room 401A College Station, TX 77843 aku...@stat.tamu.edu +1 779 777 3428 From: David Winsemius <dwinsem...@comcast.net> Sent: Wednesday, October 19, 2016 3:06 PM To: Maity, Arnab K Cc: r-help@r-project.org Subject: Re: [R] Error message in SIS p

Re: [R] Error message in SIS package

2016-10-19 Thread David Winsemius
> On Oct 17, 2016, at 1:54 PM, Maity, Arnab K wrote: > > I try to run the following code: > > sis.fit <- SIS(y = Surv(time = y[, 1], event = y[, 2]), x = x, family = > "cox", penalty = "lasso", tune = "cv", > nfolds = 10, type.measure = "deviance", nsis =

Re: [R] Error message in SIS package

2016-10-17 Thread Jeff Newmiller
I doubt I will know how to help you in any case, but I can see that you are shackling yourself to a very small (possibly empty) set of helpers by not making your example reproducible. You will also slow any helpers down once you change that if you post again in HTML format... set your email

[R] Error message in SIS package

2016-10-17 Thread Maity, Arnab K
I try to run the following code: sis.fit <- SIS(y = Surv(time = y[, 1], event = y[, 2]), x = x, family = "cox", penalty = "lasso", tune = "cv", nfolds = 10, type.measure = "deviance", nsis = min(dim(x)), iter = FALSE, seed = 334) I get the following error: Error in

Re: [R] error message for every parenthesis

2016-02-16 Thread Tara Kerin
Thank you both for your quick reply! I did install 3.2.3, it appears that was just a typo in my earlier message. Yes! deleting the workspace and history seems to correct the problem. I will also not continue the practice of saving my workspace. I have also now downloaded R studio. Thank you for

Re: [R] error message for every parenthesis

2016-02-16 Thread Michael Dewey
Dear Tara 1 - why did you install 3.2.1 when 3.2.3 is the latest version 2 - what happens if you delete .RData and .Rapp.history from your workspace? 3 - you do have a function try as it is part of R On 16/02/2016 02:49, Tara Kerin wrote: Hi, I seem to be having the same problem Garrett

[R] error message for every parenthesis

2016-02-16 Thread Tara Kerin
Hi, I seem to be having the same problem Garrett (below) had in 2009. However, I do not have functions named try written in my active code. In fact, I don't have any of my own functions written at all yet. I did just install version 3.2.1 today, and the errors started after that. Please advise!

[R] Error message when running gam (mgcv). object not found

2015-12-11 Thread Diego Pavon
Dear all I am trying to fit gam to my data but it keeps giving me errors. It does not find the covariate ArrivalTime even though it is clearly defined in the data frame. It happens with any covariate that I put in the s() term... And not only for this data set, but for any dataset that I try to

Re: [R] Error message when running gam (mgcv). object not found

2015-12-11 Thread Simon Wood
Hi Diego, I suggest you send me an example offline, along with the result of sessionInfo(), best, Simon On 11/12/15 09:25, Diego Pavon wrote: Dear all I am trying to fit gam to my data but it keeps giving me errors. It does not find the covariate ArrivalTime even though it is clearly

[R] Error Message when using VarSelection in YaiImpute package with the randomForest

2015-09-16 Thread andrew haywood
Dear All, when using the following code x <- iris[,1:2] # Sepal.Length Sepal.Width y <- iris[,3:4] # Petal.Length Petal.Width vsel <- varSelection(x=x,y=y,nboot=5,yaiMethod="randomForest",useParallel=FALSE) I get the following error code Error in yai(x = xa, y = y, method = yaiMethod,

Re: [R] Error message from allEffects(model) / effect(model) ‘range’ not meaningful for factors

2015-08-19 Thread John Fox
Of Robert Zimbardo Sent: Tuesday, August 18, 2015 8:50 PM To: r-help@r-project.org Subject: [R] Error message from allEffects(model) / effect(model) ‘range’ not meaningful for factors Hi I cannot figure out why the effects package throws me error messages with the following simple code: rm

[R] Error message from allEffects(model) / effect(model) ‘range’ not meaningful for factors

2015-08-19 Thread Robert Zimbardo
Hi I cannot figure out why the effects package throws me error messages with the following simple code: rm(list=ls(all=TRUE)); set.seed(1); library(effects) # set up data x - factor(rep(letters[1:3], each=100)) y - c(rnorm(100, 3, 3), rnorm(100, 4, 3), rnorm(100, 5, 3)) # fit linear model m -

Re: [R] Error message from allEffects(model) / effect(model) ‘range’ not meaningful for factors

2015-08-19 Thread Michael Dewey
You rm is of class summary.lm Is that what allEffects is expecting? On 19/08/2015 01:49, Robert Zimbardo wrote: Hi I cannot figure out why the effects package throws me error messages with the following simple code: rm(list=ls(all=TRUE)); set.seed(1); library(effects) # set up data x -

Re: [R] error message in package FD, function dbFD ()

2015-07-15 Thread William Dunlap
Try doing rownames(x) - x[Species] before running dbFD. The function is probably using the row and column names of its inputs as species names, not a certain row or column of the data. Bill Dunlap TIBCO Software wdunlap tibco.com On Wed, Jul 15, 2015 at 6:47 AM, lauraRIG laura.ri...@slu.se

Re: [R] error message in package FD, function dbFD ()

2015-07-15 Thread Jeff Newmiller
Thank you for making an effort, but your example is still not reproducible. Study something like [1] for more clarity on how to communicate online. Problems that you encounter in getting your data into R are different than problems with the functions in base R or contributed packages, and a

[R] error message in package FD, function dbFD ()

2015-07-15 Thread lauraRIG
Dear R community, I have some trouble with the dbFD function in the FD package. str(a) 'data.frame':150 obs. of 48 variables: str(x) 'data.frame':48 obs. of 9 variables: ex1 - dbFD(x,a) Error in dbFD(x, a) : Species labels in 'x' and 'a' need to be identical and ordered

Re: [R] ERROR Message

2015-05-22 Thread Jim Lemon
Hi Ivone, This does look a bit like homework as someone else sent a help request with a strikingly similar problem. However, I would first do something like this: is.array(datalist[[1]]) as this is what the error message is saying. Jim On Sat, May 23, 2015 at 2:57 AM, Ivone Figueiredo

[R] ERROR Message

2015-05-22 Thread Ivone Figueiredo
Hi Could you please help me I am trying to fit a Multilevel Poisson regression with the following code ## BUGS CODE ## Multilevel Poisson regression model { for (i in 1:n){ y[i] ~ dpois (lambda[i]) log(lambda[i]) - mu + b.species[Species[i]] + b.quarter[Quarter[i]] +

Re: [R] error message

2015-05-22 Thread John Kane
Subject: [R] error message Hi Can you please help me :( I am trying to fit a multilevel model but I have received the following message skate.3 - bugs (skate.data, inits=NULL, skate.parameters, skates.bug,+ n.chains=2, n.iter=500, + bugs.directory=c:/ProgramFiles(x86

[R] error message

2015-05-22 Thread Catarina Maia
Hi Can you please help me :( I am trying to fit a multilevel model but I have received the following message skate.3 - bugs (skate.data, inits=NULL, skate.parameters, skates.bug,+ n.chains=2, n.iter=500, + bugs.directory=c:/ProgramFiles(x86)/OpenBUGS/OpenBUGS323,+

Re: [R] error message: ReadItem: unknown type 64, perhaps written by later version of R

2015-03-06 Thread Prof Brian Ripley
On 05/03/2015 20:34, Franckx Laurent wrote: Dear all I get the following error message when I try to load one specific RData object in R: Error: ReadItem: unknown type 64, perhaps written by later version of R The error message is odd because (a) this RData object was created just

Re: [R] error message: ReadItem: unknown type 64, perhaps written by later version of R

2015-03-06 Thread Franckx Laurent
-Original Message- From: Prof Brian Ripley [mailto:rip...@stats.ox.ac.uk] Sent: vrijdag 6 maart 2015 10:23 To: Franckx Laurent; r-help@r-project.org Subject: Re: [R] error message: ReadItem: unknown type 64, perhaps written by later version of R On 05/03/2015 20:34, Franckx

[R] error message: ReadItem: unknown type 64, perhaps written by later version of R

2015-03-05 Thread Franckx Laurent
Dear all I get the following error message when I try to load one specific RData object in R: Error: ReadItem: unknown type 64, perhaps written by later version of R The error message is odd because (a) this RData object was created just one hour berfore in a previous script (in a

[R] Error message for corAR1()

2014-07-21 Thread Wilson, Jenny
Hi, I am trying to answer the see if density.km (response) is affected by Direction (continuous, integer), Layer (nominal with 12 levels) and direction (nominal with 8 levels). There is an interaction between Layer and Direction. Platform.field is a list of 9 different platforms and is being

[R] Error message in varimp function: Party package

2014-06-13 Thread Roxanne Snook
Dear R community, I’m trying to use the “party” package to view variables that are important in my data frame (FIM_RS4). My data has a combination of ordinal, nominal, categorical, and continuous data. I’ve written my code below, with my predictor variables being 2:36, and my response

Re: [R] Error message when fitting a binomial response model using glm

2014-05-24 Thread David Winsemius
On May 23, 2014, at 2:04 PM, Adams, Jean wrote: Roland, I did a google search for R Error: inner loop 2; cannot correct step size and found an old R-help message that suggests the glm() algorithm cannot converge. https://stat.ethz.ch/pipermail/r-help/2009-December/223142.html

[R] Error message when fitting a binomial response model using glm

2014-05-23 Thread Roland Deutsch
Dear R-help, during a simulation study using glm, I got the following error message for which I cannot determine the cause: Error: inner loop 2; cannot correct step size Below is the code for which this error occurred is clog-function(){ linkfun-function(mu) qexp(mu)

Re: [R] Error message when fitting a binomial response model using glm

2014-05-23 Thread Adams, Jean
Roland, I did a google search for R Error: inner loop 2; cannot correct step size and found an old R-help message that suggests the glm() algorithm cannot converge. https://stat.ethz.ch/pipermail/r-help/2009-December/223142.html I get the same error message as you when I fit

[R] Error message in R

2014-04-15 Thread mark.link
Hello, we get at a users individual following error: java.lang.OutOfMemoryError: unable to create new native thread Can you please tell me how I can fix this? Thank you very much Sincerely yours Mark Link Applikationsmanagement Hauck Aufhäuser Privatbankiers KGaA Kaiserstraße 24 60311

Re: [R] Error message in R

2014-04-15 Thread Uwe Ligges
On 15.04.2014 14:03, mark.l...@hauck-aufhaeuser.de wrote: Hello, we get at a users individual following error: java.lang.OutOfMemoryError: unable to create new native thread Can you please tell me how I can fix this? You are using the xlsx package? Increase the java heap size, I find a

Re: [R] Error Message using xyplot of lattice

2014-04-06 Thread arun
Hi, You didn't provide a reproducible example.  If your dataset is something like this: set.seed(495) DataSeries - data.frame(Date=seq(as.Date(2001-01-01),by=1 day, length.out=20), A= sample(10,20,replace=TRUE), B= rnorm(20)) ###Using your codes: Matrix_New1 -

Re: [R] Error Message using xyplot of lattice

2014-04-06 Thread arun
HI, Check the output of: datM - melt(DataSeries,id.var=Date) head(datM,2)# 3 columns # Date variable value #1 2001-01-01 A 4 #2 2001-01-02 A 1 datM1 - setNames(datM,LETTERS[c(24,26,25)]) library(lattice) xyplot(Y~as.numeric(X),data=datM1,groups=Z,type=l) A.K. hi, thank you for the help.

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