[R] extracting p-values in scientific notation

2011-10-03 Thread Liviu Andronic
Dear all How does print.htest display the p-value in scientific notation? (x - cor.test(iris[[1]], iris[[3]])) Pearson's product-moment correlation data: iris[[1]] and iris[[3]] t = 21.65, df = 148, p-value 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent

Re: [R] extracting p-values in scientific notation

2011-10-03 Thread Rolf Turner
Isn't it true that 0 2.2e-16? cheers, Rolf Turner On 03/10/11 20:53, Liviu Andronic wrote: Dear all How does print.htest display the p-value in scientific notation? (x- cor.test(iris[[1]], iris[[3]])) Pearson's product-moment correlation data: iris[[1]] and iris[[3]]

Re: [R] extracting p-values in scientific notation

2011-10-03 Thread Kenn Konstabel
is(x) [1] htest # take a look at stats:::print.htest format.pval(x$p.value) [1] 2.22e-16 Does that answer your question? KK On Mon, Oct 3, 2011 at 10:53 AM, Liviu Andronic landronim...@gmail.com wrote: Dear all How does print.htest display the p-value in scientific notation? (x -

Re: [R] extracting p-values in scientific notation

2011-10-03 Thread Ted Harding
One point to note, for information, in this discussion is that cor.test() has apparently returned the P-value as an exact zero: x$p.value == 0 # [1] TRUE identical(x$p.value, 0) # [1] TRUE (which, by the way, I was led to after trying log10(x$p.value) and getting -Inf). Perhaps a more

Re: [R] extracting p-values in scientific notation

2011-10-03 Thread Liviu Andronic
Thanks all for your pointers. The following does trick: base::format.pval(x$p.value) ##Hmisc also has such a function [1] 2e-16 On Mon, Oct 3, 2011 at 10:25 AM, Rolf Turner rolf.tur...@xtra.co.nz wrote: Isn't it true that 0 2.2e-16? Yes, but it doesn't mean that the p-value actually hits

Re: [R] extracting p-values in scientific notation

2011-10-03 Thread Erich Neuwirth
format.pval is documented and accessible from outside of base. So you do not have to qualify it as base::format.pval On 10/3/2011 11:24 AM, Liviu Andronic wrote: Thanks all for your pointers. The following does trick: base::format.pval(x$p.value) ##Hmisc also has such a function [1] 2e-16