Re: [R] infer haplotypes phasing trios tdthap

2009-06-29 Thread Jing Hua Zhao
Dear Tiago and David, Just for a bit of personal interest, Haplin has been part of CRAN which is potentially helpful. http://cran.r-project.org/web/packages/Haplin/index.html from http://www.uib.no/smis/gjessing/genetics/software/haplin/ Best regards, Jing Hua -Original Message-

Re: [R] infer haplotypes phasing trios tdthap

2009-01-26 Thread David Clayton
tdthap wassn't intended to solve that problem and it has been removed from my own web site since I no longer consider it important enough to support. DC -Original Message- From: Tiago R Magalhães [mailto:tiag...@gmail.com] Sent: 22 January 2009 11:10 To: r-help@R-project.org

[R] infer haplotypes phasing trios tdthap

2009-01-22 Thread Tiago R Magalhães
Dear R mailing list, I have a dataset with genotypes from trios and I would like to infer haplotypes for each mother, father and child. The package that I could find that can do this is tdthap. But when the mother is homozygous (e.g., 2/2) the haplotype is called as not possible to infer

Re: [R] infer haplotypes phasing trios tdthap

2009-01-22 Thread Jing Hua Zhao
Dear Tiago, I received this message from r-help. I should say I have limited experiences with tdthap so David should have the final say about it? Alternatively, you may wish to use independent programs as listed in the linkage server at Rockefeller? I would of course find out if I have