[R] limmaGUI anomaly: top-table venn-diagram for linear model

Hello, In limmaGUI, after running a linear model for a single gene time point (mutant vs control), the venn-diagram for differentially expressed genes with a p-value cut-off gives a different number than the top-table with the same cut-off (2600 vs. 791). I have seen the same thing happen

Re: [R] limmaGUI anomaly: top-table venn-diagram for linear model

d.le...@warwick.ac.uk wrote: Hello, In limmaGUI, after running a linear model for a single gene time point (mutant vs control), the venn-diagram for differentially expressed genes with a p-value cut-off gives a different number than the top-table with the same cut-off (2600 vs. 791). I