ailto:r-help-boun...@r-project.org] On Behalf Of Jari Oksanen
Sent: 29 October 2015 03:23 PM
To: r-h...@stat.math.ethz.ch
Subject: Re: [R] monte carlo simulations in permanova in vegan package
Sean Porter ori.org.za> writes:
> I am trying to run a PERMANOVA in the vegan package with an
> appropri
ailto:r-help-boun...@r-project.org] On Behalf Of Jari Oksanen
Sent: 29 October 2015 03:23 PM
To: r-h...@stat.math.ethz.ch
Subject: Re: [R] monte carlo simulations in permanova in vegan package
Sean Porter ori.org.za> writes:
> I am trying to run a PERMANOVA in the vegan package with an
> appropri
Sean Porter ori.org.za> writes:
> I am trying to run a PERMANOVA in the vegan package with an appropriate
> number of permutations (see example below), ideally . Obviously that
> number of permutations does not exists so I would like to use Monte Carlo
> permutation tests to derive the probab
easonable number of permutations. Hopefully
> > this clarifies my situation and aim?
> >
> >
> >
> > I was therefore hoping there was a way of coding for the Monte-Carlo
> > permutation procedure into adonis?
> >
> >
> >
> > Thanks for your h
>
>
>
> I was therefore hoping there was a way of coding for the Monte-Carlo
> permutation procedure into adonis?
>
>
>
> Thanks for your help!
>
>
>
> From: stephen sefick [mailto:ssef...@gmail.com]
> Sent: 27 October 2015 03:11 PM
> To: Sean Porter
>
ion and
aim?
I was therefore hoping there was a way of coding for the Monte-Carlo
permutation procedure into adonis?
Thanks for your help!
From: stephen sefick [mailto:ssef...@gmail.com]
Sent: 27 October 2015 03:11 PM
To: Sean Porter
Cc: r-help@r-project.org
Subject: Re: [R] monte carlo s
The example code works, and reports permutations. Can you provide more
information?
data(dune)
data(dune.env)
adonis(dune ~ Management*A1, data=dune.env, permutations=)
On Tue, Oct 27, 2015 at 3:56 AM, Sean Porter wrote:
> Dear colleagues,
>
>
>
> I am trying to run a PERMANOVA in th
Dear colleagues,
I am trying to run a PERMANOVA in the vegan package with an appropriate
number of permutations (see example below), ideally . Obviously that
number of permutations does not exists so I would like to use Monte Carlo
permutation tests to derive the probability value, as is do
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