Re: [R] problem with creation of eSet

2008-02-28 Thread James W. MacDonald
Hi Manisha, This is a Bioconductor-specific question. Please repost on the bioc listserv: [EMAIL PROTECTED] Best, Jim Manisha Brahmachary wrote: Hi, I am having troubles with creating an eSet and would appreciate any help on the following problem. I am trying to create

[R] problem with creation of eSet

2008-02-27 Thread Manisha Brahmachary
Hi, I am having troubles with creating an eSet and would appreciate any help on the following problem. I am trying to create an eSet using the following code pd - read.table(file=pdata.txt,header =TRUE,row.names=1); colnames(pd) - c(type,tumor,time,id); pdN - list(type =

Re: [R] problem with creation of eSet

2008-02-27 Thread Martin Morgan
Hi Manisha -- this is a bioconductor package, so ask on the Bioconductor mailing list. The 'exprSet' class is quite old, and has been replaced by the 'ExpressionSet' class. Update your venison of R and Bioconductor (http://bioconductor.org/download). Then evaluate the commands library(Biobase)