Re: [R] update.packages() after updating R version [RESOLVED]

On Sat, 26 May 2018, Duncan Murdoch wrote: I think you want update.packages(ask = FALSE, checkBuilt = TRUE) to automatically update all packages and their dependencies. With the default checkBuilt=FALSE, R just sees whether a dependency is a high enough version number. But packages installed

Re: [R] update.packages() after updating R version

On 26/05/2018 7:24 PM, Rich Shepard wrote: R-3.5.0 is installed here. When I tried to update installed packages errors were reported when their dependencies were built under a prior version of R. Reading ?update.packages() I did not see an option that would automatically update

Re: [R] update.packages() after updating R version

On Sat, 26 May 2018, Bert Gunter wrote: Is this warning in ?update.packages relevant? Bert, Short answer: no. I have only a single R library here: /usr/lib/R/library. I've tried 'install.packages("", dependencies = TRUE) and still need to follow the dependencies chain down,

Re: [R] update.packages() after updating R version

Is this warning in ?update.packages relevant? "Take care when using dependencies (passed to install.packages ) with update.packages, for it is unclear where new dependencies should be installed. The current implementation will only

[R] update.packages() after updating R version

R-3.5.0 is installed here. When I tried to update installed packages errors were reported when their dependencies were built under a prior version of R. Reading ?update.packages() I did not see an option that would automatically update dependences built under an earlier version of R. Is

Re: [R] update.packages() error R 3.4.0

Ah, if you have been following along the thread.. use the patched version. -- Sent from my phone. Please excuse my brevity. On April 28, 2017 9:06:21 AM PDT, Robert Baer wrote: >Is there an easy work-around for the update.packages error I'm getting >on Windows 10 with R 3.4.0?

Re: [R] update.packages() error R 3.4.0

Please see previous messages from today concerning this. -- Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Fri, Apr 28, 2017 at 9:58 AM, Dimitri

Re: [R] update.packages() error R 3.4.0

I am having the same problem - just installed R 3.4.0 on my Windows laptop. Same thing with packages - exactly the same error. On Fri, Apr 28, 2017 at 12:06 PM, Robert Baer wrote: > Is there an easy work-around for the update.packages error I'm getting on > Windows 10 with R

[R] update.packages() error R 3.4.0

Is there an easy work-around for the update.packages error I'm getting on Windows 10 with R 3.4.0? > update.packages() --- Please select a CRAN mirror for use in this session --- foreign : Version 0.8-67 installed in C:/Program Files/R/R-3.4.0/library Version 0.8-68 available at

Re: [R] update.packages() behavior

I am not seeing an option with $ ./configure --help to include libcurl. The Release Notes say: = It is now easier to use secure downloads from https:// URLs on builds which support them: no longer do non-default options need to be selected to do so. In particular, packages can be installed

Re: [R] update.packages() behavior

Right R-3.2.2 has the new default, but requires, for example, libcurl suppport in order to be able to deal with https. See the reelase Notes. Otherwise, http works as before. Best, Uwe Ligges On 07.09.2015 17:08, Bennet Fauber wrote: I recently compiled and installed R 3.2.2 on an RHEL 6.5

[R] update.packages() behavior

I recently compiled and installed R 3.2.2 on an RHEL 6.5 system. Upon installation, I tried $ R-3.2.2/bin/R R version 3.2.2 (2015-08-14) -- "Fire Safety" > update.packages() --- Please select a CRAN mirror for use in this session --- Error in download.file(url, destfile = f, quiet = TRUE)

[R] update.packages() ask for mirror several times

I recently installed an R-3.2.0 binary for Win7 64-bit from a CRAN table. Now when using the menu to update packages, it asks me to select a mirror several times before proceeding to successfully download and install the updated packages. It is only a minor annoyance, was wondering if anyone

Re: [R] update.packages() ask for mirror several times

On 05/05/2015 12:13 PM, Nordlund, Dan (DSHS/RDA) wrote: I recently installed an R-3.2.0 binary for Win7 64-bit from a CRAN table. Now when using the menu to update packages, it asks me to select a mirror several times before proceeding to successfully download and install the updated

Re: [R] update.packages() ask for mirror several times

05, 2015 12:31 PM To: Nordlund, Dan (DSHS/RDA); r-help@r-project.org Subject: Re: [R] update.packages() ask for mirror several times On 05/05/2015 12:13 PM, Nordlund, Dan (DSHS/RDA) wrote: I recently installed an R-3.2.0 binary for Win7 64-bit from a CRAN table. Now when using the menu

Re: [R] update.packages fails on pdf write - CSAgent

= y, repos = NULL, lib = C:/pathToLocationWhereWritesAreAllowed) #now manually copy the folders to the R installation and overwrite the existing ones. Tim Date: Wed, 02 Oct 2013 11:17:29 -0400 From: Tim Howard tghow...@gw.dec.state.ny.us To: r-help@r-project.org Subject: [R] update.packages

[R] update.packages fails on pdf write - CSAgent

All, I work in a building where our computers are running Windows XP with Cisco Security Agent (CSA) activated, locking many automated actions, especially file writes. We (lowly staff) are allowed to install software, so on upgrading to R 3.0.2, I tried the standard approach for updating my

[R] update.packages(checkBuilt = TRUE) fails in updating rpanel_1.1-1 due to missing package BWidget

update.packages(checkBuilt = TRUE) fails with: update.packages(checkBuilt = TRUE) rpanel : Version 1.0-6 installed in /usr/lib64/R/library built under R 2.15.0 Version 1.1-1 available at http://mirrors.softliste.de/cran Update (y/N/c)? y trying URL

Re: [R] update.packages(checkBuilt = TRUE) fails in updating rpanel_1.1-1 due to missing package BWidget

I encountered the same problem. I emailed the maintainer last week but have not yet received a response. I don't see a BWidget package on CRAN either. On 03/26/2013 04:31 AM, Juergen Rose wrote: update.packages(checkBuilt = TRUE) fails with: update.packages(checkBuilt = TRUE) rpanel :

Re: [R] update.packages(checkBuilt = TRUE) fails in updating rpanel_1.1-1 due to missing package BWidget

On 26/03/2013 13:02, Kevin E. Thorpe wrote: I encountered the same problem. I emailed the maintainer last week but have not yet received a response. I don't see a BWidget package on CRAN either. It is not an R package: it is a Tcl/Tk extension. The rpanel maintainer has been asked to add

[R] update.packages problem

I've updated to R-devel on my development machine and have lots of packages. The update.packages() script ends up with 33 failures, all due to out-of-order reloading. That is, if package abc depends on package xyz, then the reinstall of abc fails with a message that version of xyz is built

Re: [R] update.packages problem

On 09/01/2013 12:52, Terry Therneau wrote: I've updated to R-devel on my development machine and have lots of packages. The update.packages() script ends up with 33 failures, all due to out-of-order reloading. That is, if package abc depends on package xyz, then the reinstall of abc fails with

[R] update.packages() issue

I updated packages using the update.packages() command but now having problems. i now know I should have done this from the terminal (sudo rstudio and then update.packages()). Instead I just opened rstudio without the sudo command. So I know what to do going forward but how do I resolve the

Re: [R] update.packages fail

On 29.06.2011 21:07, Art Burke wrote: update.packages has suddenly stopped working for me It did not stop working, it just gave the warning that the CRAN extras repository (http://www.stats.ox.ac.uk/pub/RWin/bin) was not available when you tried due to power outages in Oxford where CRAN

[R] update.packages fail

update.packages has suddenly stopped working for me (after working fine yesterday). My default mirror is at Oregon State University, but I get the following warning even after setting another mirror. Other Internet connections are working on my computer. Suggestions, please.

Re: [R] update.packages() and install.packages() does not work more because of Error in read.dcf

On 30.03.2010 23:00, R P Herrold wrote: On Tue, 30 Mar 2010, Prof Brian Ripley wrote: A hint: I have seen this exact error message with a build configured to use the system's zlib 1.2.4 (which has been out for about 2 weeks), and this incompatibility is noted in the current R 2.11.0 alpha's

[R] update.packages() and install.packages() does not work more because of Error in read.dcf

On Thu, 1 Apr 2010, Uwe Ligges wrote: herrold, before: The true fault causing the noted message seems to be that there is a faulty compression/decompression occuring in a carried library -- would't it be better to not bundle a frozen library, and to rather simply 'flag' packages needed a

[R] update.packages() and install.packages() does not work more because of Error in read.dcf

()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. update.packages(checkBuilt=T) --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done Error in read.dcf(file = tmpf) : Line starting 'Li

Re: [R] update.packages() and install.packages() does not work more because of Error in read.dcf

packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. update.packages(checkBuilt=T) --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done Error

Re: [R] update.packages() and install.packages() does not work more because of Error in read.dcf

is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. update.packages

[R] update.packages() and install.packages() does not work more because of Error in read.dcf

On Tue, 30 Mar 2010, Prof Brian Ripley wrote: A hint: I have seen this exact error message with a build configured to use the system's zlib 1.2.4 (which has been out for about 2 weeks), and this incompatibility is noted in the current R 2.11.0 alpha's manuals. We do recommend *not* using the

[R] update.packages with UNC library path

Hi all, I hit a small snag. Here is my workaround (copied verbatim from my aide memoire) in case it helps others. (or anyone knows a better way... ;-) Best regards, Keith Jewell. The site library file is defined (in Renviron.site

[R] update.packages on MS Windows with //server/share paths

Hi, update.packages(ask='graphics') gives me multiple warning (one per updated package?) similar to ... Warning: unable to move temporary installation '\\Server02\stats\R\library\2.10\file3de56e0d\locfit' to '\\Server02\stats\R\library\2.10\locfit' The final, updated, folders do not end

Re: [R] update.packages on MS Windows with //server/share paths

Try mapping a drive letter to \\Server02 and then use that. For more, google for: map network drive On Tue, Jan 26, 2010 at 10:01 AM, Keith Jewell k.jew...@campden.co.uk wrote: Hi, update.packages(ask='graphics')  gives me  multiple warning (one per updated package?) similar to ...

Re: [R] update.packages on MS Windows with //server/share paths

Thanks Gabor, but expanding on my remark... I can work around by mapping a drive letter to the '//server/share', but prefer not to (for local reasons). R is installed on our network, used by others (with readonly access), maintained by me. In 'Renviron.site' I have...

Re: [R] update.packages()

On Wed, 11-Nov-2009 at 03:47PM +0100, CG Pettersson wrote: | Dear all, | | W.XP | | I recently upgraded to R2.10.0 and did what I usually do: copied all | special libraries from the old installation and then used | update.packages() on the command line. Nothing happened. Then I clicked | on the

Re: [R] update.packages()

On Nov 12, 2009, at 1:00 PM, Patrick Connolly wrote: On Wed, 11-Nov-2009 at 03:47PM +0100, CG Pettersson wrote: | Dear all, | | W.XP | | I recently upgraded to R2.10.0 and did what I usually do: copied all | special libraries from the old installation and then used | update.packages() on

[R] update.packages()

Dear all, W.XP I recently upgraded to R2.10.0 and did what I usually do: copied all special libraries from the old installation and then used update.packages() on the command line. Nothing happened. Then I clicked on the same command on the droplist which generated

Re: [R] update.packages(checkBuilt=TRUE) returns Error: invalid version specification NA in 2.9.0

...@statistik .tu-dortmund.de To peter_kel...@fws.gov 04/24/2009 12:24 cc PMr-help@r-project.org Subject Re: [R

Re: [R] update.packages(checkBuilt=TRUE) returns Error: invalid version specification NA in 2.9.0

cc PMr-help@r-project.org Subject Re: [R

Re: [R] update.packages(checkBuilt=TRUE) returns Error: invalid version specification NA in 2.9.0

Just a guess: We had an issues with malformed PACKAGES files in the Windows repositories. Maybe you are affected here. Can you please try in 24 hours from now to do that again using the mirror in Austria. If the problem persists, please let me know. Thank you, Uwe Ligges

[R] update.packages(checkBuilt=TRUE) returns Error: invalid version specification NA in 2.9.0

I installed R-2.9.0 yesterday, and followed the instructions in the R for Windows FAQ, 2.8 What's the best way to upgrade? It reads run update.packages(checkBuilt=TRUE, ask=FALSE) in the new R and then delete anything left of the old installation. I did this but it returned an error. It's the