Re: [R] Writing to a file

2013-05-21 Thread arun
Hi, Try this:  lst1-lapply(1:5,function(i) {pdf(paste0(i,.pdf));  hist(rnorm(100),main=paste0(Histogram_,i));dev.off()}) #you can change the numbers A.K. I'm trying to generate a pdf called 1.pdf, 2.pdf, 3.pdf etc and it isn't working. My code is: x - 0 for(i in 1:1000){ x - x + 1

[R] writing data to file

2012-03-22 Thread mail me
Hi: I created a data frame df - data.frame( person = c('John','Bob','Mary'), team = c('a','b','c'), stringsAsFactors = F); and obtained the expected output df person team 1 John a 2Bob b 3 Mary c now I want to save the whole content of df preserving its row and

Re: [R] writing data to file

2012-03-22 Thread Gaurav Sood
look up dump On Thu, Mar 22, 2012 at 11:35 AM, mail me mailme...@googlemail.com wrote: Hi: I created a data frame df - data.frame( person = c('John','Bob','Mary'), team = c('a','b','c'), stringsAsFactors = F); and obtained the expected  output  df  person   team 1   John      a 2    

Re: [R] writing data to file

2012-03-22 Thread Peter Ehlers
On 2012-03-22 08:35, mail me wrote: Hi: I created a data frame df- data.frame( person = c('John','Bob','Mary'), team = c('a','b','c'), stringsAsFactors = F); and obtained the expected output df person team 1 John a 2Bob b 3 Mary c now I want to save the whole

[R] Writing a .pdf file within a function - what do I need to return()?

2012-03-13 Thread Dgnn
I am trying to write a function that generates one PDf containing plots from several .csv files within a directory. When I manually execute the code it seems to work, but not when it is a function. I think I need to return() something, but haven't had much luck figuring out what/how.

Re: [R] Writing a .pdf file within a function - what do I need to return()?

2012-03-13 Thread R. Michael Weylandt
See R FAQ 7.22 -- in short, you need to print() your plot to the graphics device -- just wrap xyplot() in print() and it should work. Michael On Tue, Mar 13, 2012 at 3:55 PM, Dgnn sharkbrain...@gmail.com wrote: I am trying to write a function that generates one PDf containing plots from

Re: [R] Writing to a file

2012-02-07 Thread Felicity
Thank you a lot for answering so fast! but..what do you mean by example? I 've mentioned above the loop I used and I also show how the file looks like 'cause its huge. the way i read the file is x=read.table(filename.txt,header=FALSE,sep=\t,fill=TRUE) y=x[1:45,] (i use only some rows in order to

Re: [R] Writing to a file

2012-02-07 Thread Petr PIKAL
Hi Thank you a lot for answering so fast! but..what do you mean by example? I 've mentioned above the loop I used and I also show how the file looks like I do not see any loop. I do not archive all posts from R help, only those with interesting answers :-) and if you do not keep the

Re: [R] Writing to a file

2012-02-07 Thread Felicity
Thanks a lot for the interest :) My loop is the following counter = 0 for (i in 1:nrow(y)) { for (j in 1:ncol(y)) { if (y[i,j]==Func_0005634) { counter = counter + 1 } if(y[i,j]==Func_0005737){ counter = counter + 1 } if(y[i,j]==Func_0005515){ counter =

Re: [R] Writing to a file

2012-02-07 Thread R. Michael Weylandt
As I said to you a while back, use append = TRUE. Michael On Tue, Feb 7, 2012 at 4:18 AM, Felicity felicity...@hotmail.com wrote: Thanks a lot for the interest :) My loop is the following counter = 0  for (i in 1:nrow(y))  {  for (j in 1:ncol(y))  {  if (y[i,j]==Func_0005634) {      

Re: [R] Writing to a file

2012-02-07 Thread Petr PIKAL
Hi now you omitted data, but never mind :-) My loop is the following counter = 0 for (i in 1:nrow(y)) { for (j in 1:ncol(y)) { if (y[i,j]==Func_0005634) { counter = counter + 1 } if(y[i,j]==Func_0005737){ counter = counter + 1 } if(y[i,j]==Func_0005515){

Re: [R] Writing to a file

2012-02-06 Thread Felicity
Dear All!! I am also new in R and trying to write my results into a file I post here..hopefully is the proper place To be more secific I have this loop counter = 0 for (i in 1:nrow(y)) { for (j in 1:ncol(y)) { if (y[i,j]==Func_0005634) { counter = counter + 1 }

Re: [R] Writing to a file

2012-02-06 Thread R. Michael Weylandt
You don't say how you are writing to a file, but some methods have an append = TRUE option that might be helpful. Your code looks really inefficient as well: I don't have time to look at it fully now, but it seems to me that you can vectorize the inner loops quite directly: for(j in ncol(y)){

Re: [R] Writing to a file

2012-02-06 Thread Felicity
maybe I could keep each line (having the strings) in a file or somewhere and then call a print function that prints them all together from where I saved them? Please let me know as soon as Possible!! thank you! -- View this message in context:

Re: [R] Writing to a file

2012-02-06 Thread jim holtman
You can easily do that, but the question is what is the problem you are trying to solve? What do you want to do with the lines you are writing out? Are you going to read them back in or process them with some other program? So save them in a character vector and then write them out with 'cat'.

Re: [R] Writing to a file

2012-02-06 Thread Felicity
Honestly thank you for the prompt responding and you are right I will tellyou what I want to do and not the way ..since I dont know much from R I have a txt with Proteins Prot_10035Func_0005874 Func_0016787 Func_0003774 Func_0006898 Func_0005856 Func_0005525 Func_0005737 Func_0003924

Re: [R] Writing to a file

2012-02-06 Thread Petr PIKAL
Hi Honestly thank you for the prompt responding and you are right I will tellyou what I want to do and not the way ..since I dont know much from R I have a txt with Proteins Prot_10035 Func_0005874 Func_0016787 Func_0003774 Func_0006898 Func_0005856 Func_0005525

Re: [R] Writing a summary file in R

2011-08-03 Thread a217
data with multiple positions in each region and assigning all of the summary results to one line identified by the region. If any of you have any suggestions I would appreciate it. -- View this message in context: http://r.789695.n4.nabble.com/Writing-a-summary-file-in-R-tp3700031p3700031

[R] Writing a summary file in R

2011-07-27 Thread a217
is essentially taking the input data with multiple positions in each region and assigning all of the summary results to one line identified by the region. If any of you have any suggestions I would appreciate it. -- View this message in context: http://r.789695.n4.nabble.com/Writing-a-summary-file-in-R

Re: [R] Writing a summary file in R

2011-07-27 Thread David Winsemius
On Jul 27, 2011, at 7:02 PM, a217 wrote: Hello, I have an input file: http://r.789695.n4.nabble.com/file/n3700031/testOut.txt testOut.txt where col 1 is chromosome, column2 is start of region, column 3 is end of region, column 4 and 5 is base position, column 6 is total reads, column 7

Re: [R] Writing a summary file in R

2011-07-27 Thread a217
Yes, that is the general objective. I'll look-into aggregates in R and see if anything helps. Thanks, a217 -- View this message in context: http://r.789695.n4.nabble.com/Writing-a-summary-file-in-R-tp3700031p3700071.html Sent from the R help mailing list archive at Nabble.com

Re: [R] Writing a summary file in R

2011-07-27 Thread Dennis Murphy
in context: http://r.789695.n4.nabble.com/Writing-a-summary-file-in-R-tp3700031p3700031.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] Writing a summary file in R

2011-07-27 Thread David Winsemius
identified by the region. If any of you have any suggestions I would appreciate it. -- View this message in context: http://r.789695.n4.nabble.com/Writing-a-summary-file-in-R-tp3700031p3700031.html Sent from the R help mailing list archive at Nabble.com

Re: [R] Writing a summary file in R

2011-07-27 Thread a217
Thank you both very much! The codes are pretty slick and should greatly help me in my task. -- View this message in context: http://r.789695.n4.nabble.com/Writing-a-summary-file-in-R-tp3700031p3700382.html Sent from the R help mailing list archive at Nabble.com

[R] Writing to a file

2010-12-02 Thread Thomas Parr
From: Thomas Parr [mailto:thomas.p...@maine.edu] Sent: Thursday, December 02, 2010 10:52 PM To: r-help-requ...@stat.math.ethz.ch Subject: Writing to a file I am trying to get my script to write to a file from the for loop. It is working, but the problem is at it is outputting to two columns and

Re: [R] Writing to a file

2010-12-02 Thread Jorge Ivan Velez
Hi Thomas, If x contains your current results, one way to do what you want is the following: # data x - read.table(textConnection(X2403,0.006049271 X2403,0.000118622 X2403,50.99600705 X2403,7.62E-150 X2419,0.012464215 X2419,9.07E-05 X2419,137.4022573 X2419,6.45E-273), sep = ,)

[R] writing to a file

2010-11-13 Thread Gregory Ryslik
Hi, I have a fairly complex object that I have written a print function for. Thus when I do print(results), the R console shows me a whole bunch of stuff already formatted. What I want to do is to take whatever print(results) shows to console and then put that in a file. I am doing this using

Re: [R] writing to a file

2010-11-13 Thread jim holtman
The HELP page for 'sink' is pretty clear about this: sink() or sink(file=NULL) ends the last diversion (of the specified type). There is a stack of diversions for normal output, so output reverts to the previous diversion (if there was one). The stack is of up to 21 connections (20 diversions).

[R] Writing a NetCDF file in R

2009-08-04 Thread Steve Murray
Dear all, I am attempting to convert 10 NetCDF files into a single NetCDF file, due to the data input requirements of a model I hope to use. I am using the ncdf package, version 1.6. The data are global-scale water values, on a monthly basis for 10 years (ie. 120 months of data in total; at