Re: [R] Idea/package to linearize a curve along the diagonal?

2012-03-12 Thread Jeff Newmiller
It is possible that I do not see what you mean, but it seems like the following code does what you want. The general version of this is likely to be rather more difficult to do, but in theory the inverse function seems like what you are trying to accomplish. x - 1:20 y - x^2 + rnorm(20) y.lm

Re: [R] How to plot diagonal line at any coordinate range in R

2012-03-12 Thread Jeff Newmiller
I remain skeptical of the value of what you are doing, then. Anyway, don't use a slope of one in your abline function call. The easiest way to be sure what your plot ranges are is to define them yourself, and then defining the slope and intercept needed for your abline call is straightforward

Re: [R] ggplot2: coord_polar

2012-03-12 Thread Jeff Newmiller
Works for me on Windows XP with R 2.14.1 (not patched). You may be too far out on the bleeding edge. Upgrading to 2.14.2 is probably the best first step. If that doesn't fix it then posting on R-devel (assuming you can identify the bug in R) or the ggplot mailing list is probably more

[R] Odp: Finding the mean.

2012-03-12 Thread Petr PIKAL
Hi Using functions how would I go about do this question? (I already have a mean defined for a function of x.) Write a function called MyMean2. This function has two arguments, x and nonzero, where nonzero has the default value TRUE. This function should return the (Previous

Re: [R] nice report generator?

2012-03-12 Thread christiaan pauw
Hi Michael I have seen that this post has taken omn quite a life of it's own. Just for the record I want to add another very neat package that I didn't see mentioned elsewhere: reporttools regrads Christiaan On 7 December 2011 20:14, Michael comtech@gmail.com wrote: Hi all, I am looking

[R] A question on histogram - area much less than 1

2012-03-12 Thread jpm miao
Hello, I have problem running the histogram function hist. The area under the histogram is much lower than 1. Could anyone tell me what the problem is? Thanks, (The total number of observation is 992 (close to 1000), so the probability that 0Y135 is approximately 0.277) miao

[R] Re : A question on histogram - area much less than 1

2012-03-12 Thread Pascal Oettli
Hi Miao, With option freq=FALSE, the function hist calculates densities, i.e. in your case, counts/total/length in-between breaks. h - hist(Y1, breaks=seq(0, 350, by=35),freq=FALSE) If you calculate:  h$counts/sum(h$counts)/35 = h$density Regards, Pascal - Mail original - De : jpm

[R] problem with Rpanel

2012-03-12 Thread ATANU
I am trying to make a application which will have checkboxes. The application will have some names of distributions (which have to be checked) and then on clicking OK (or similar button) it will return the names of the distributions selected. I have tried rp.checkbox but cannot make the function

[R] Replicating Stata's xtreg clustered SEs in R

2012-03-12 Thread David A. Kim
I'm trying to replicate a time-series cross-sectional analysis (countries over years) with SEs clustered by country.  The original analysis was done in Stata 10 with: xtreg [DV] [IVs] fe cluster(country). Using plm() in R (cran.r-project.org/web/packages/plm/index.html), I've replicated the

[R] barplot and NA

2012-03-12 Thread John D. Muccigrosso
Am I wrong that barplot is supposed to just skip NAs, and continue with the rest of the data in a matrix column? That's how I read various posts on the subject. But that's not what happens for me with R64.app (on a Mac, obviously). For example: d0 - as.matrix(c(2,3,4)) d1 -

Re: [R] A question on histogram - area much less than 1

2012-03-12 Thread Rolf Turner
Why do you say that the area is much lower than 1? It is exactly equal to 1. How did you calculate this area? Your code seems extremely convoluted and confused. You could construct your (rather bizarre) vector Y1 much more simply as Y1 - rep((0.5 + 0:9)*35,c(277,146,99,80,69,63,52,53,55,98))

Re: [R] resume on error

2012-03-12 Thread Alaios
Thanks a lot. How I can use try though for plots. There are times where the plot function will fail  pdf(file=filename, width=width)  try(plot_per_band(list(get(varlist[[k]])), i, j, l, datalabels=seq(1:length(varlist dev.off() the code above does not print anything. B.R Alex

Re: [R] A question on histogram - area much less than 1

2012-03-12 Thread jpm miao
Hello, Thanks very much for your kind response. Yes, if I multiply by the width 35, the area should be equal to one. How can I plot the probability bars rather than density bars? That is, I would like the height of the first bar to be 0.279, which is the probability that the variable falls

Re: [R] xyplot without external box

2012-03-12 Thread David Winsemius
On Mar 12, 2012, at 4:29 AM, Mauricio Zambrano-Bigiarini wrote: 2012/3/9 David Winsemius dwinsem...@comcast.net: On Mar 8, 2012, at 8:02 AM, Mauricio Zambrano-Bigiarini wrote: Dear list members, Within a loop, I need to create an xyplot with only a legend, not even with the default

Re: [R] A question on histogram - area much less than 1

2012-03-12 Thread Rolf Turner
On 12/03/12 21:44, jpm miao wrote: Hello, Thanks very much for your kind response. Yes, if I multiply by the width 35, the area should be equal to one. How can I plot the probability bars rather than density bars? That is, I would like the height of the first bar to be 0.279, which is

Re: [R] xyplot without external box

2012-03-12 Thread Mauricio Zambrano-Bigiarini
2012/3/9 Greg Snow 538...@gmail.com: Why do you want to do this?  Lattice was not really designed to put just part of the graph up, but rather to create the entire graph using one command. To make a long story short, you are right, I need to do this because my knowledge with trellis graphics

Re: [R] xyplot without external box

2012-03-12 Thread Mauricio Zambrano-Bigiarini
2012/3/9 David Winsemius dwinsem...@comcast.net: On Mar 8, 2012, at 8:02 AM, Mauricio Zambrano-Bigiarini wrote: Dear list members, Within a loop, I need to create an xyplot with only a legend, not even with the default external box drawn by lattice. I already managed to remove the axis

Re: [R] ggplot2: coord_polar

2012-03-12 Thread Athula Herath
Thank you Jeff, I took the short-cut and updated R to R-2.14.2 and it works too. A. On 12 March 2012 06:43, Jeff Newmiller jdnew...@dcn.davis.ca.us wrote: Works for me on Windows XP with R 2.14.1 (not patched). You may be too far out on the bleeding edge. Upgrading to 2.14.2 is probably the

Re: [R] xyplot without external box

2012-03-12 Thread Mauricio Zambrano-Bigiarini
2012/3/12 David Winsemius dwinsem...@comcast.net: On Mar 12, 2012, at 4:29 AM, Mauricio Zambrano-Bigiarini wrote: 2012/3/9 David Winsemius dwinsem...@comcast.net: On Mar 8, 2012, at 8:02 AM, Mauricio Zambrano-Bigiarini wrote: Dear list members, Within a loop, I need to create an xyplot

[R] Faceted bar plot shows wrong counts (ggplot2)

2012-03-12 Thread Helios de Rosario
I have encountered a problem with faceted bar plots. I have tried to create something like the example explained in the ggplot2 book (see pp. 126-128): library(ggplot2) mpg4 - subset(mpg, manufacturer %in% c(audi, volkswagen, jeep)) mpg4$manufacturer - as.character(mpg4$manufacturer)

Re: [R] Problems when building a package for Windows 64

2012-03-12 Thread Duncan Murdoch
On 12-03-11 4:30 PM, Eduardo Mendes wrote: Dear Prof. Ripley Many thanks. rtools 2.15 did the job. One note if I may - In the rtools site one reads rtools215.exe - r2.14.1 to R 2.15.x No rtoosl214.exe - r 2.13.x or R.2.14.x yes which can mislead the reader. 2.14.x could mean 2.14.2 But as

Re: [R] resume on error

2012-03-12 Thread Sarah Goslee
On Mon, Mar 12, 2012 at 4:39 AM, Alaios ala...@yahoo.com wrote: Thanks a lot. How I can use try though for plots. There are times where the plot function will fail  pdf(file=filename, width=width)  try(plot_per_band(list(get(varlist[[k]])), i, j, l, datalabels=seq(1:length(varlist

Re: [R] removing values from a survival curve

2012-03-12 Thread Terry Therneau
On Sat, 2012-03-10 at 12:00 +0100, r-help-requ...@r-project.org wrote: Hi All, s = Surv(outcome.[,1], outcome.[,2]) survplot= (survfit(s ~ person.list[,1])) summary(survplot) This prints a summary of all the curves at specified time

Re: [R] resume on error

2012-03-12 Thread Alaios
Thanks a lot for the answer.. As you can see my chain is the following open a pdf device. plot and close the device pdf(file=filename, width=width) try(plot_per_band_ (list(get(varlist[[k]])), i, j,meanPlot=TRUE)) dev.off() I would like if plot fails (so try returns try-error) the file to not

Re: [R] Problems when building a package for Windows 64

2012-03-12 Thread Eduardo Mendes
Ok. On Mon, Mar 12, 2012 at 8:17 AM, Duncan Murdoch murdoch.dun...@gmail.comwrote: On 12-03-11 4:30 PM, Eduardo Mendes wrote: Dear Prof. Ripley Many thanks. rtools 2.15 did the job. One note if I may - In the rtools site one reads rtools215.exe - r2.14.1 to R 2.15.x No rtoosl214.exe -

Re: [R] resume on error

2012-03-12 Thread R. Michael Weylandt
Close the device anyways; test for an error as Sarah (and the help pages) describe and use unlink() to delete the resultant (empty) file if the plot call fails. Michael On Mon, Mar 12, 2012 at 8:30 AM, Alaios ala...@yahoo.com wrote: Thanks a lot for the answer.. As you can see my chain is the

Re: [R] max.print

2012-03-12 Thread Martin Maechler
Peter Ehlers ehl...@ucalgary.ca on Sat, 10 Mar 2012 11:04:06 -0800 writes: On 2012-03-10 08:35, sybil kennelly wrote: Dear all. I wanted to read in a 20,000 row X 60 column matrix (called table) into R. i did this: R table- read.table(table,

Re: [R] SEM eigen value error 0 X 0 matrix

2012-03-12 Thread John Fox
Dear Jessica, As you can see, it's a little hard to look at your commands because of the lack of newlines, and you also don't give data, so one can't tell which variables are latent and which observed, but I'm going to guess that this is a latent-variable model with factors belonging, autonomy,

Re: [R] extracting data from unstructured (text?) file

2012-03-12 Thread jim holtman
On Sun, Mar 11, 2012 at 9:21 PM, frauke fh...@andrew.cmu.edu wrote: Wow Jim, this is much more than I expected. Thank you!! It took me a while to figure out what exactly you are doing in that code. But I think I understand and it definitely runs. May I ask you two follow up questions?

[R] Replicating Stata's xtreg clustered SEs in R

2012-03-12 Thread Millo Giovanni
Hello David. Usually I'd ask for a reproducible example (see the posting guide), but as I routinely check my results against Stata, this time I think I know what happens already. There are two issues here: one is cluster-robust covariance estimation, which in Stata is done through 'vce(cluster

[R] (no subject)

2012-03-12 Thread aoife doherty
Hey guys, if i do a correspondance analysis, e.g.: table - structure(c(4, 7, 0.2, 3, .1, 7, 222, 3, 10, 5, 11, 8, 8, 10, 7), .Dim = c(5L, 3L), .Dimnames = list(c(gene1, gene2, gene3, gene4, gene5), c(codon1, codon2, codon3))) Library(ca) plot(ca(table)) is there a way that i can see

Re: [R] (no subject)

2012-03-12 Thread Milan Bouchet-Valat
Le lundi 12 mars 2012 à 14:48 +, aoife doherty a écrit : Hey guys, if i do a correspondance analysis, e.g.: table - structure(c(4, 7, 0.2, 3, .1, 7, 222, 3, 10, 5, 11, 8, 8, 10, 7), .Dim = c(5L, 3L), .Dimnames = list(c(gene1, gene2, gene3, gene4, gene5), c(codon1, codon2,

Re: [R] Window on a vector

2012-03-12 Thread Alaios
Yep I did some mistake while I was typing the example What I want is this one cbind(2^(0:(n-1))) and  the problem is that at the last window this is going to explode are there will be less elements than what the window asks for. How should I deal with that? Regards Alex

Re: [R] Window on a vector

2012-03-12 Thread R. Michael Weylandt
It's not always true that going out of bounds in subscripting gives an error (as you seem to assert in your original post) x - 1:3 x[4] # No error and note that mean() has a na.rm argument. Perhaps you should construct a *reproducible* example of what you think will go wrong. Michael On Mon,

[R] how to calculate a variance and covariance matrix for a vector

2012-03-12 Thread huang jialin
Hello, I have a vector {a, b1, b2, b3, b4}. How can I calculate the following matrix: var(a) cov(a, b1) cov(a, b2) cov(a, b3) cov(a, b4) cov(a, b1) var(b1) cov(a, b2) cov(a, b3) cov(a, b4) ... ... cov(a, b1) cov(a, b2) cov(a, b3) cov(a, b4) var(b4) I would very appreciate your inputs.

Re: [R] how to calculate a variance and covariance matrix for a vector

2012-03-12 Thread Jorge I Velez
?cov HTH, Jorge.- On Mon, Mar 12, 2012 at 11:42 AM, huang jialin wrote: Hello, I have a vector {a, b1, b2, b3, b4}. How can I calculate the following matrix: var(a) cov(a, b1) cov(a, b2) cov(a, b3) cov(a, b4) cov(a, b1) var(b1) cov(a, b2) cov(a, b3) cov(a, b4) ... ... cov(a,

Re: [R] how to calculate a variance and covariance matrix for a vector

2012-03-12 Thread R. Michael Weylandt
On Mon, Mar 12, 2012 at 11:42 AM, huang jialin huangps...@gmail.com wrote: Hello, I have a vector {a, b1, b2, b3, b4}. What does this mean? Is this a character vector giving names of objects that exist elsewhere in the workspace? Else, how do you tell a/b1/b2 apart in a vector? You probably

Re: [R] how to calculate a variance and covariance matrix for a vector

2012-03-12 Thread Doran, Harold
Can you provide sample data? This suggests that a and b1, for example, are scalars. If that is what you actually have then you cannot produce a covariance between two scalars. -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of

Re: [R] how to calculate a variance and covariance matrix for a vector

2012-03-12 Thread huang jialin
Hi, Thanks for your response. I tried to use cov() before, but got NA all over the place. a and b1 are scalars in the example. So that is the problem. I will start over from the formula. Thanks again. Sincerely, Jialin Huang On Mon, Mar 12, 2012 at 10:47 AM, Doran, Harold hdo...@air.org

[R] Finding the median

2012-03-12 Thread elliot.welch
Hi just a quick question in which I must use the function and return part of R. If I was asked to define a function called median where the function has a single argument x and returns the median value of a vector. How would I go about saying the median = element x in terms of n (say (n + 1)/2

Re: [R] how to calculate a variance and covariance matrix for a vector

2012-03-12 Thread Doran, Harold
Always start with the help page. But, the best way to get help on this list is to construct some toy data. Even if imperfect, people will work to help you. Maybe show us some of your actual data. Of course, if a and b1 are really scalars, I don’t think there is such a thing as the covariance

[R] Installing RMySQL -- 64-bit Windows 7

2012-03-12 Thread z2.0
Trying to install RMySQL on 64-bit Windows 7. Using R-2.14.2 with Rtools214 and MySQL Server 5.5. Read through several step-by-steps of RMySQL source installation. Troubleshooting: - Copied libmysql.dll to R-2.14.2/bin AND R-2.14.2/bin/i386. - Copied libmysql.dll and libmysql.lib to MySQL

Re: [R] Window on a vector

2012-03-12 Thread Petr Savicky
On Sat, Mar 10, 2012 at 04:44:00AM -0800, Alaios wrote: Dear all, I have a large vector (lets call it myVector) and I want to plot its value with the logic below yaxis-myVector[1] yaxis-c(xaxis,mean(myvector[2:3]) yaxis-c(xaxis,mean(myvector[4:8]) yaxisc(xaxis,mean(myvector[9:16])

Re: [R] Draw values from multiple data sets as inputs to a Monte-Carlo function; then apply across entire matrix

2012-03-12 Thread Diann Prosser
Dear all, I have developed a loop but receive an error (error 1 below) because the mcstoc function prohibits arrays. I tried creating an mcnode to represent the data frame, but received Error 2 below (array size not compatible with node dimension). I'm still at a loss on how to apply the

Re: [R] Window on a vector

2012-03-12 Thread Alaios
You will find here a reprodusible example, and you will also see it exploding myData-seq(1:10) windowList-list(1,2,3,4) totalLength- length(myData) windowSize-30 for (i in 2:length(windowList)) {     myMean-array()     indexes-seq(1,totalLength,by=windowSize*windowList[[i]])     for (j in

Re: [R] Finding the median

2012-03-12 Thread Sarah Goslee
I'd start by using if(). If you can convince the list that this isn't homework, you might get more help. Sarah On Mon, Mar 12, 2012 at 7:15 AM, elliot.we...@virgin.net wrote: Hi just a quick question in which I must use the function and return part of R. If I was asked to define a

Re: [R] how to calculate a variance and covariance matrix for a vector

2012-03-12 Thread huang jialin
Doran, Thanks for your advice. Sincerely, Jialin Huang On Mon, Mar 12, 2012 at 10:56 AM, Doran, Harold hdo...@air.org wrote: Always start with the help page. But, the best way to get help on this list is to construct some toy data. Even if imperfect, people will work to help you. Maybe

Re: [R] Installing RMySQL -- 64-bit Windows 7

2012-03-12 Thread Prof Brian Ripley
On 12/03/2012 15:29, z2.0 wrote: Trying to install RMySQL on 64-bit Windows 7. Using R-2.14.2 with Rtools214 and MySQL Server 5.5. Read through several step-by-steps of RMySQL source installation. Troubleshooting: - Copied libmysql.dll to R-2.14.2/bin AND R-2.14.2/bin/i386. - Copied

Re: [R] repositories for 2.11 2.12

2012-03-12 Thread Uwe Ligges
On 07.03.2012 18:31, Miklós Emri wrote: On 03/07/2012 04:58 PM, Prof Brian Ripley wrote: On 07/03/2012 15:45, Duncan Murdoch wrote: On 12-03-07 7:59 AM, Miklós Emri wrote: Dear experts, I have to install ggplot2 packages for R 2.11 and 2.12 but this is available for 2.14 only. My question:

Re: [R] A question on histogram - area much less than 1

2012-03-12 Thread David L Carlson
You expected the sum to be 1 and it is: a - hist(Y1, breaks=seq(0, 350, by=35), col=grey80, freq=FALSE) a$density*35 [1] 0.27923387 0.14717742 0.09979839 0.08064516 0.06955645 0.06350806 [7] 0.05241935 0.05342742 0.05544355 0.09879032 sum(a$density*35) [1] 1 Note that the first density

[R] 2 images on one plot

2012-03-12 Thread Petr PIKAL
Dear all with image I can plot only one set of values in one plot. Do somebody have any insight how to put those 2 matrices into one picture so that in one cell in image picture are both values from mat[1,1] and mat2[1,1]. mat-matrix(1:4, 2,2) mat2-matrix(4:1,2,2) x -1:2 y -1:2 image(x, y,

Re: [R] Installing RMySQL -- 64-bit Windows 7

2012-03-12 Thread David Winsemius
On Mar 12, 2012, at 12:05 PM, Prof Brian Ripley wrote: On 12/03/2012 15:29, z2.0 wrote: Trying to install RMySQL on 64-bit Windows 7. Using R-2.14.2 with Rtools214 and MySQL Server 5.5. Read through several step-by-steps of RMySQL source installation. Troubleshooting: - Copied

Re: [R] Finding the median

2012-03-12 Thread Sarah Goslee
Hi, On Mon, Mar 12, 2012 at 12:10 PM, elliot.we...@virgin.net wrote: I've tried the if function? Its just defining when something is even or odd? R's help system might be useful. www.rseek.org might be useful. You haven't accomplished the second part of my response, and this isn't a homework

Re: [R] Subsetting a data.frame - Read in with FWF format from .DAT file

2012-03-12 Thread RHelpPlease
Hi Michael, Thanks so much for your detailed reply! I gained a better understanding of the read.fwf function, along with ensuring I better note how these read-in functions convert variables, etc. As well, your tip on removing format while converting the PRVDR_NUM variable to numeric (from

Re: [R] barplot and NA

2012-03-12 Thread ilai
d2 - as.matrix(c(2,NA,4)) barplot(d2,beside=T) barplot(c(d2)) barplot(na.omit(d2)) d2[2,] - 0 barplot(d2) # So barplot is not stopping at the first NA (first 2 plots). But what does stacking even mean when you have a missing group in the middle ? you can't expect barplot to know... if you

Re: [R] how to calculate a variance and covariance matrix for a vector

2012-03-12 Thread Mark Lamias
cov(A) will compute a covariance matrix of the columns of a matrix A.   cov(a, b) will compute a covariance of the vectors a and b.   here are some examples:   #create random vectors a=rnorm(10) b=rnorm(10)     a  [1] -0.3110384 -2.6201009 -1.3078118  1.3384743  2.4032381 -0.7245201  [7]

Re: [R] how to calculate a variance and covariance matrix for a vector

2012-03-12 Thread huang jialin
Mark, It is of great help. Thank you very much. I appreciate it. Sincerely, Jialin Huang On Mon, Mar 12, 2012 at 11:27 AM, Mark Lamias mlam...@yahoo.com wrote: cov(A) will compute a covariance matrix of the columns of a matrix A. cov(a, b) will compute a covariance of the vectors a and b.

Re: [R] Finding the median

2012-03-12 Thread Sarah Goslee
Did you try what I suggested? If you go to www.rseek.org and search for odd or even integers you will get various solutions. You could even write your own test by comparing x/2 with round(x/2). Also, it's good form to copy the list on your replies, not just me. Sarah On Mon, Mar 12, 2012 at

[R] Maximum of remaining elements of vector

2012-03-12 Thread behave14
Dear community I have the following problem. I'd like to have the maximum of the remaining elements of a vector. ex. x-c(1,2,3,4,1,2,3,1,2,1) f(x) = c(4,4,4,4,3,3,3,2,2,1) where the first element is: max(x[1:length(x]) the second one: max(x[2:length(x)]) the third one: max(x[3:length(x)])

[R] Get a subset

2012-03-12 Thread stella
Hi, I have a list of names (alphanumeric characters) and each row by itself contains a different number of names seperated by a semicolon (;). There are also rows with no entry. I would like to have the name before the first semicolon in each row, if there is any entry. Does anyone have an idea

[R] I DID IT!

2012-03-12 Thread Nathaniel Saxe
Make A Profit with your own home businesshttp://tiz.co.kr/555cd.php?yppage=a9k2 [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help

Re: [R] Finding the median

2012-03-12 Thread Kevin E. Thorpe
Also, if it is not homework, why are you reinventing some functionality already in R? R can easily calculate medians for you. Kevin On 03/12/2012 12:35 PM, Sarah Goslee wrote: Did you try what I suggested? If you go to www.rseek.org and search for odd or even integers you will get various

Re: [R] Get a subset

2012-03-12 Thread Sarah Goslee
You can use gsub() to delete all the characters after the first semicolon by replacing them with . If you provide the requested reproducible example, I imagine someone will provide you with working code, if reading the help for gsub() isn't enough to get you going. Sarah On Mon, Mar 12, 2012 at

Re: [R] barplot and NA

2012-03-12 Thread S Ellison
-Original Message- Am I wrong that barplot is supposed to just skip NAs, and continue with the rest of the data in a matrix column? That's how I read various posts on the subject. But that's not what happens for me with R64.app (on a Mac, obviously). For example: d0 -

Re: [R] barplot and NA

2012-03-12 Thread John D. Muccigrosso
On 12 Mar 2012, at 12:47 , S Ellison wrote: Yes, to the extent that the default barplot plots the height of the bar so far as the sum of teh values so far, starting at teh first. For your first vector, no problem; for your second, the highest value is undefiuned, for the third, the sum is

Re: [R] Maximum of remaining elements of vector

2012-03-12 Thread David L Carlson
-Original Message- From: r-help-boun...@r-project.org [mailto:r-help-bounces@r- project.org] On Behalf Of behave14 Sent: Monday, March 12, 2012 11:15 AM To: r-help@r-project.org Subject: [R] Maximum of remaining elements of vector Dear community I have the following problem.

Re: [R] Maximum of remaining elements of vector

2012-03-12 Thread Petr Savicky
On Mon, Mar 12, 2012 at 09:14:43AM -0700, behave14 wrote: Dear community I have the following problem. I'd like to have the maximum of the remaining elements of a vector. ex. x-c(1,2,3,4,1,2,3,1,2,1) f(x) = c(4,4,4,4,3,3,3,2,2,1) where the first element is: max(x[1:length(x]) the

[R] How to create interrupted boxplot

2012-03-12 Thread jianghong deng
Hello, I have created two boxplots with following R code. There is one outlier in B group. The outlier is 33. But the all other data are between 0 to 4. How can I skip y-axis around 5 to 25, and expand 0-4 for this case. Also I want keep the outlier in my boxplot. I want my boxplot look like the

[R] Panel models: Fixed effects random coefficients in plm

2012-03-12 Thread Millo Giovanni
Hello. Such a procedure is not implemented in 'plm' but you can probably get around to do what you want. One possible way (my preferred one) is to demean the data by both dimensions as you would do for a two-way FE model, and then estimate a random parameters model on the demeaned data. This would

[R] mapply assign to generate functions

2012-03-12 Thread J Toll
Hi, I have a problem that I'm finding a bit tricky. I'm trying to use mapply and assign to generate curried functions. For example, if I have the function divide divide - function(x, y) { x / y } And I want the end result to be functionally equivalent to: half - function(x) divide(x, 2)

Re: [R] How to create interrupted boxplot

2012-03-12 Thread Helios de Rosario
Jianghong wrote: Hello, I have created two boxplots with following R code. There is one outlier in B group. The outlier is 33. But the all other data are between 0 to 4. How can I skip y-axis around 5 to 25, and expand 0-4 for this case. Also I want keep the outlier in my boxplot. I

Re: [R] mapply assign to generate functions

2012-03-12 Thread Brian Diggs
On 3/12/2012 10:47 AM, J Toll wrote: Hi, I have a problem that I'm finding a bit tricky. I'm trying to use mapply and assign to generate curried functions. For example, if I have the function divide divide- function(x, y) { x / y } And I want the end result to be functionally equivalent

Re: [R] How to create interrupted boxplot

2012-03-12 Thread David Winsemius
On Mar 12, 2012, at 1:19 PM, jianghong deng wrote: Hello, I have created two boxplots with following R code. There is one outlier in B group. The outlier is 33. But the all other data are between 0 to 4. How can I skip y-axis around 5 to 25, and expand 0-4 for this case. Also I want

Re: [R] mapply assign to generate functions

2012-03-12 Thread William Dunlap
I think that adding a force(i) to your inner function should fix things up. z - mapply(assign, +c(half, third, quarter), +lapply(2:4, function(i) { + force(i) + function(x) divide(x, i)}), +pos = 1) half(10) [1] 5 third(10) [1]

Re: [R] mapply assign to generate functions

2012-03-12 Thread J Toll
Bill and Brian, Thank you both for the finding my error. force() appears to do the trick. Thanks again, James On Mon, Mar 12, 2012 at 1:09 PM, William Dunlap wdun...@tibco.com wrote: I think that adding a force(i) to your inner function should fix things up.   z - mapply(assign,  +      

Re: [R] what does rlm do if it fails to converge within iteration limits?

2012-03-12 Thread Michael
The problem is: by default shouldn't it use Huber's? And it should be convex problem no? so when I do rlm(y~x) which is a single-beta fitting problem, shouldn't it always converge? Thanks! Psi functions are supplied for the Huber, Hampel and Tukey bisquare proposals as

[R] lapply to change variable names and variable values

2012-03-12 Thread Simon Kiss
Hi: I'm sure this is a very easy problem. I've consulted Data Manipulation With R and the R Book and can't find an answer. Sample list of data frames looks as follows: .xx-list(df-data.frame(Var1=rep('Alabama', 400), Var2=rep(c(2004, 2005, 2006, 2007), 400)),

Re: [R] lapply to change variable names and variable values

2012-03-12 Thread Steve Lianoglou
Hi, On Mon, Mar 12, 2012 at 2:37 PM, Simon Kiss sjk...@gmail.com wrote: Hi: I'm sure this is a very easy problem. I've consulted Data Manipulation With R and the R Book and can't find an answer. Sample list of data frames looks as follows: .xx-list(df-data.frame(Var1=rep('Alabama', 400),

Re: [R] lapply to change variable names and variable values

2012-03-12 Thread Sarah Goslee
Hi Simon, On Mon, Mar 12, 2012 at 2:37 PM, Simon Kiss sjk...@gmail.com wrote: Hi: I'm sure this is a very easy problem. I've consulted Data Manipulation With R and the R Book and can't find an answer. Sample list of data frames looks as follows: .xx-list(df-data.frame(Var1=rep('Alabama',

Re: [R] lapply to change variable names and variable values

2012-03-12 Thread R. Michael Weylandt
Your function doesn't return the new data frame but rather the new names. Note, e.g. x - 1:2 names(x) - letters[1:2] .Last.value # Not x! Try this: .xx- lapply(.xx, function(x) {colnames(x)-c('State', 'Year'); x}) or more explicitly .xx- lapply(.xx, function(x) {colnames(x)-c('State',

Re: [R] lapply to change variable names and variable values

2012-03-12 Thread Simon Kiss
Thanks both! That solves ! You've made a very happy newbie! Simon On 2012-03-12, at 2:52 PM, Sarah Goslee wrote: Hi Simon, On Mon, Mar 12, 2012 at 2:37 PM, Simon Kiss sjk...@gmail.com wrote: Hi: I'm sure this is a very easy problem. I've consulted Data Manipulation With R and the R Book

Re: [R] Idea/package to linearize a curve along the diagonal?

2012-03-12 Thread Emmanuel Levy
Hi Jeff, Thanks for your reply and the example. I'm not sure if it could be applied to the problem I'm facing though, for two reasons: (i) my understanding is that the inverse will associate a new Y coordinate given an absolute X coordinate. However, in the case I'm working on, the

[R] Simulating a VECM process.

2012-03-12 Thread Keith Weintraub
Folks, I have been working on VAR and VECM models and trying to simulate the results. This is easy to do with a VAR model (in the vars package) as the covariance matrix is easily extracted. Unfortunately I can't figure out how to do this with a VECM fit. I have used vec2var and created the

[R] Speeding up lots of calls to GLM

2012-03-12 Thread Davy
Dear useRs, First off, sorry about the long post. Figured it's better to give context to get good answers (I hope!). Some time ago I wrote an R function that will get all pairwise interactions of variables in a data frame. This worked fine at the time, but now a colleague would like me to do this

Re: [R] rpanel / list error

2012-03-12 Thread R. Michael Weylandt
My code doesn't give that error so you must have done something differently -- without seeing your code, I can't tell you what though. Also, please cc the list on follow-up if you are seeking further help. I'm not particularly knowledgeable about rpanel and others might be able to give concrete

Re: [R] index values of one matrix to another of a different size

2012-03-12 Thread Ben quant
Joshua, Just confirming quickly that your method using cmpfun and your f function below was fastest using my real data. Again, thank you for your help! Ben On Sat, Mar 10, 2012 at 1:21 PM, Joshua Wiley jwiley.ps...@gmail.comwrote: On Sat, Mar 10, 2012 at 12:11 PM, Ben quant ccqu...@gmail.com

Re: [R] Faceted bar plot shows wrong counts (ggplot2)

2012-03-12 Thread R. Michael Weylandt
You get the good behavior with base + aes(x = cut) + facet_wrap(~ color, ncol = 5) so this seems buggy to me. If someone here doesn't step forward with more insight, I'd forward it to the ggplot list to see if one of the developers there can give an explanation or possibly make the official

Re: [R] Window on a vector

2012-03-12 Thread R. Michael Weylandt
As the error message show, the problem isn't in the subscripting but rather in passing a NA to `:` If you try to implement Dr. Winsemius' method you should be fine. Also, send plain text email. Michael On Mon, Mar 12, 2012 at 11:58 AM, Alaios ala...@yahoo.com wrote: You will find here a

Re: [R] Speeding up lots of calls to GLM

2012-03-12 Thread Thomas Lumley
On Tue, Mar 13, 2012 at 7:11 AM, Davy davykavan...@gmail.com wrote: Dear useRs, First off, sorry about the long post. Figured it's better to give context to get good answers (I hope!). Some time ago I wrote an R function that will get all pairwise interactions of variables in a data frame.

Re: [R] Replicating Stata's xtreg clustered SEs in R

2012-03-12 Thread Thomas Lumley
On Mon, Mar 12, 2012 at 5:55 PM, David A. Kim david_...@hms.harvard.edu wrote: Does anyone happen to know what method cluster() for Stata's xtreg uses to calculate clustered SEs for panel data, and/or how this could be implemented equivalently in R?  Any help would be much appreciated. The

Re: [R] Speeding up lots of calls to GLM

2012-03-12 Thread Davy
Thanks for the reply. Sorry to be a pain, but could perhaps explain what you mean by you can center each SNP variable at its mean to make the interaction term uncorrelated with the main effects. I'm coming from a web based programming background so often statistical terminology doesn't click with

Re: [R] Idea/package to linearize a curve along the diagonal?

2012-03-12 Thread Jeff Newmiller
You said: Does this make sense? Not to me. I don't understand either of your points. It may be time for you to provide a concrete example of your own (reproducible R code, or at least specific input and output data). ---

[R] Fwd: Re[2]: B-spline/smooth.basis derivative matrices

2012-03-12 Thread Vassily Shvets
--- On Mon, 3/12/12, aleksandr shfets a_shf...@mail.ru wrote: From: aleksandr shfets a_shf...@mail.ru Subject: Fwd: Re[2]: [R] B-spline/smooth.basis derivative matrices To: Vassily Shvets shv...@yahoo.com Received: Monday, March 12, 2012, 5:15 PM Пересылаемое сообщение

[R] Fwd: Re[2]: B-spline/smooth.basis derivative matrices

2012-03-12 Thread Vassily Shvets
--- On Mon, 3/12/12, aleksandr shfets a_shf...@mail.ru wrote: From: aleksandr shfets a_shf...@mail.ru Subject: Fwd: Re[2]: [R] B-spline/smooth.basis derivative matrices To: Vassily Shvets shv...@yahoo.com Received: Monday, March 12, 2012, 5:15 PM Пересылаемое сообщение

Re: [R] B-spline/smooth.basis derivative matrices

2012-03-12 Thread aleksandr shfets
Hello again, Thank you, vito for these functions: I've been able to look at the smoothing spline matrix and its derivatives that I constucted with functions create.bspline.basis and smooth.basis Understanding from Hastie and Tishbirani that the S(lambda)-- the penalty matrix 25 февраля 2012,

[R] How to add/draw a persp3d graph to a plot with an existing surface/graph

2012-03-12 Thread Michael
Dear R users, I have been trying to draw the following 3d graphs: The solid region bounded above by the paraboloid z = 9 - x2 - y2 and below by the unit circle in the xy-plane. I wanted to visualize the solid region bounded by those two graphs. I could draw those two 3d graphs separately, but I

[R] Rserve as a proxy

2012-03-12 Thread Ed Siefker
Is there a simple way to use Rserve/RSclient as a proxy to transparently send requests from a local instance of R to a remote instance? It seems like this would by doable by wrapping each call that doesn't refer to a local path inside RSeval. Is this harder than it seems? Does this already

[R] erasing [1]

2012-03-12 Thread mrzung
hi, is there any way to erase the term [1]? for example, a-3+2 a *[1]* 5 the term [1] in front of number 5. is there any way? -- View this message in context: http://r.789695.n4.nabble.com/erasing-1-tp4467628p4467628.html Sent from the R help mailing list archive at Nabble.com.

Re: [R] erasing [1]

2012-03-12 Thread R. Michael Weylandt
You can write your own print method or do it using cat: cat(a, \n) Michael On Mon, Mar 12, 2012 at 6:49 PM, mrzung mrzun...@gmail.com wrote: hi, is there any way to erase the term [1]? for example, a-3+2 a *[1]*  5 the term [1] in front of number 5. is there any way? -- View this

Re: [R] erasing [1]

2012-03-12 Thread jim holtman
Will this work for you: a - 3 + 2 print(a) [1] 5 cat(a, '\n') 5 On Mon, Mar 12, 2012 at 6:49 PM, mrzung mrzun...@gmail.com wrote: hi, is there any way to erase the term [1]? for example, a-3+2 a *[1]*  5 the term [1] in front of number 5. is there any way? -- View this message

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