[R] Estimate parameters differential equations system

2018-08-29 Thread Fanny Gallais
Dear R users, I am working on a simple mathematical model made of two ordinary differential equations: dx/dt=-mx-d1(x-c) dy/dt=mx-d2y I would like to fit this model to my data and estimate the corresponding parameters. The thing is I only have observed data for y, x is unknown. Is it

Re: [R] Bitbucket code

2018-08-29 Thread Marc Schwartz via R-help
> On Aug 29, 2018, at 7:18 AM, prof.amit.mit...@gmail.com wrote: > > I installed a local zip file a few days ago and the package was recently > modified on bitbucket , with a stable zip version not yet available. > > How many days does it usually take to get a stable zip version. How can I >

Re: [R] Bitbucket code

2018-08-29 Thread Amit Mittal
I stumbled upon `remotes` and that is based on `devtools` but it fails because RTOOLS haven't been upgraded for 3.5.1 Sorry about posting twice and I am pretty sure I added this detail in another msg which will also be released by the moderator q yet :x Amit Mittal Sent from my

Re: [R] Bitbucket code

2018-08-29 Thread prof.amit.mittal
I installed a local zip file a few days ago and the package was recently modified on bitbucket , with a stable zip version not yet available. I have tried using `remotes` but `RTOOLS` is not updated for 3.5.1 Should I use my clone to install into R, I do not think I can install the whole

[R] Bitbucket code

2018-08-29 Thread prof.amit.mittal
I installed a local zip file a few days ago and the package was recently modified on bitbucket , with a stable zip version not yet available. How many days does it usually take to get a stable zip version. How can I `devtools` it from the bitbucket the fastest way? I have my own sourcetree and

Re: [R] TCGA biolinks, DNA methylation

2018-08-29 Thread Sarah Goslee
On Wed, Aug 29, 2018 at 6:58 PM Spencer Brackett wrote: > > Thank you! The line however was still found to be errored after I fixed the > mistake. Is there anything else I can do to maybe set the “.” As an object? But presumably with a different error, which you don't tell us. The "."

Re: [R] TCGA biolinks, DNA methylation

2018-08-29 Thread Bert Gunter
As an aside, the sep = "," can be omitted, as that's the default anyway. In his response to Sarah, the OP gave us only "the line was found to be errored," which of course is useless. Perhaps if he provided explicit information on what the call and the error was... -- Bert On Wed, Aug 29, 2018

[R] TCGA biolinks, DNA methylation

2018-08-29 Thread Spencer Brackett
Good evening R users, I am attempting to carry out DNA methylation analysis on two separate CSV files (LGG and GBM), which I have downloaded onto my R console. To set the path<-"." to be indicative of one or both of the csv files, I utilized the following functions and received the errors

Re: [R] TCGA biolinks, DNA methylation

2018-08-29 Thread Sarah Goslee
Hi, If you had an actual gene analysis question I'd suggest the BioConductor email list, but you have a plain old ordinary typo: the_data <-read.csv(file="LGG_clinical_drug.csv",header=T,sep",") You're missing the = after the argument sep the_data <- read.csv(file = "LGG_clinical_drug.csv",

Re: [R] TCGA biolinks, DNA methylation

2018-08-29 Thread Spencer Brackett
Thank you! The line however was still found to be errored after I fixed the mistake. Is there anything else I can do to maybe set the “.” As an object? Spencer On Wed, Aug 29, 2018 at 6:34 PM Sarah Goslee wrote: > Hi, > > If you had an actual gene analysis question I'd suggest the >

[R-es] V Xornada Usuarios de R en Galicia

2018-08-29 Thread miguel.angel.rodriguez.muinos
Hola. Como todos los a�os, estamos organizando la reuni�n del grupo de usuarios de R en Galicia. El formato ser� el habitual, una Jornada en la que habr� relatorios que nos permitan intercambiar experiencias y nos den una idea de los campos de accci�n por los que nos movemos, adem�s de un par