R is trying to do device-independent graphics and produce the same
annotation output on any graphics device. It assumes that when you write
'$' you want a dollar sign, and so on. Also, it needs to be able to
render the text to find its bounding box (and baseline) and so place it
accurately.
attach(file_name.RDA)
dump(list=ls(2),file=file_name.R)
This creates file file_name.R, containing R commands, executed to produce
the contents of the file_name.RDA
Data frames and matrices can be stored in ASCII file in tabular form using
write.table()
You can also consider cat()
Jittima
Julien Barnier julien at no-log.org writes:
Hi,
When I try this example at work, I got an error message during Sweave
which is close from something like warning : semitransparency not
supported by this device. When I try at home (with the given
sessionInfo), I got no warning but in both
Hi I'm simulating missing data patterns and I've started to get a lot of
functions in the same .R file is it possible to store al these functions in
a library like one does in C++ (i.e the .h file) and read the functions from
the main .R file
/Mauricio
[[alternative HTML version
Mauricio Malfert wrote:
Hi I'm simulating missing data patterns and I've started to get a lot of
functions in the same .R file is it possible to store al these functions
in
a library like one does in C++ (i.e the .h file) and read the functions
from
the main .R file
/Mauricio
You
I have a function like this:
changedir - function(dataframe) {
dir - dataframe$dir
gc_content - dataframe$gc_content
d - ifelse(dir == -,
gc_content - -gc_content,gc_content - gc_content)
return(d)
}
The goal of this function is to be able to input a data frame like this:
lala
Having your functions in a text file, say functions.r and then calling:
source(functions.r)
is also an option. This assumes you are in the same directory as
functions.r. Perhaps take a look at ?setwd and ?getwd as well.
On 9/25/07, Vladimir Eremeev [EMAIL PROTECTED] wrote:
Mauricio
source'ing is a bad practice because this saves additional copies of
functions and data in the local workspace.
Wasting disk space is not a problem now since HDDs are cheap and function
bodies are generally small.
But, when you change any function body, you have to repeat that source()
call in
Karin Lagesen wrote:
I have a function like this:
changedir - function(dataframe) {
dir - dataframe$dir
gc_content - dataframe$gc_content
d - ifelse(dir == -,
gc_content - -gc_content,gc_content - gc_content)
return(d)
}
The goal of this function is to be able to input a
On 9/25/07, Karin Lagesen [EMAIL PROTECTED] wrote:
I have a function like this:
changedir - function(dataframe) {
dir - dataframe$dir
gc_content - dataframe$gc_content
d - ifelse(dir == -,
gc_content - -gc_content,gc_content - gc_content)
return(d)
}
The goal of this
d - ifelse(dir == -, -gc_content , gc_content)
works. You need not assign gc_content a new value in each comparison,
because then your result depends only on the last value of dir,
which happened to be -, so you got -0.5 for all gc_content.
hth
Karin Lagesen schrieb:
I have a function like
Hallo!
I would need a code for 10-fold cross validation for the classifiers Naive
Bayes and svm (e1071) package. Has there already been done something like that?
I tried to do it myself by applying the tune function first:
library(e1071)
tune.control - tune.control(random =F, nrepeat=1,
Help is sincerely requested.
After further investigation, I found that if I run .jmethods and have
the listing below. I know that this driver works because I have a java
program using that loads data scrapped from the web every night.
The call to JDBC in my previous email is trying to create
Hello,
thank you very much for the quick answer.
This works well. it draws a nice ellipse in the right orientation.
However, I doubt that the ellipse represents the 95% confidence
interval, even if that is the standard-parameter for level is .95. The
ellipse surely is to large?
Any further help
On Tue, 25 Sep 2007, Prof Brian Ripley wrote:
R is trying to do device-independent graphics and produce the same
annotation output on any graphics device. It assumes that when you
write '$' you want a dollar sign, and so on. Also, it needs to be
able to render the text to find its bounding
Hi all,
Following the major electricity problem we got at the University during
the summer (the R Wiki was down for several days), there is a need for
shutting off electricity on the whole campus for a full day to fix it
next Thursday 27 September. Consequently, the R Wiki may be down for up
...and my R education (and embarassment) continues ;)
On 9/25/07, Vladimir Eremeev [EMAIL PROTECTED] wrote:
source'ing is a bad practice because this saves additional copies of
functions and data in the local workspace.
Wasting disk space is not a problem now since HDDs are cheap and
The thing to remember is that ifelse is a function,
it returns a value, so usually one does not need assignments within the
function call.
You also could do:
negindices - dir==-
gc_content[negindices] - -gc_content[negindices]
Eik Vettorazzi wrote:
d - ifelse(dir == -, -gc_content , gc_content)
Dear R users,
I have started work in a Statistics government department and I am trying to
convince my bosses to install R on our computers (I can't do proper stats in
Excel!!). They asked me to prove that this is a widely used software (and not
just another free-source, bug infected toy I found
Dear Eleni,
Maybe the participants of the useR conferences are a good start, see
e.g.
http://www.r-project.org/useR-2006/participants.html
Kind regards,
Markus Gesmann
FPMA
Lloyd's Market Analysis
Lloyd's * One Lime Street * London * EC3M 7HA
Telephone +44 (0)20 7327 6472
Fax +44 (0)20
Hi there,
If the final predicted clusters vary according to a random starting cluster
then I suspect that your data is not clustering very well!!
A few reasons for this may be:
1) There are genuinely no clusters in the data!
2) You have chosen a poor distance measure.
3) You have picked an
On 9/25/07, Eleni Rapsomaniki [EMAIL PROTECTED] wrote:
Dear R users,
I have started work in a Statistics government department and I am trying to
convince my bosses to install R on our computers (I can't do proper stats in
Excel!!). They asked me to prove that this is a widely used software
Jared:
I agree with your advice - I use source() too!
I think I work in a different way to many, and don't ever save
current workspace but use the interactive R environment cutting and
pasting code from documents held under version control.
As long as one is careful, I don't think there is any
See the Members and Donors section on the left-hand side of the R web
site.
Cheers,
Simon.
Note to self: Become a supporting member.
On Tue, 2007-09-25 at 11:59 +0100, Gesmann, Markus wrote:
Dear Eleni,
Maybe the participants of the useR conferences are a good start, see
e.g.
Just speaking of the field I'm most familiar with, there
are now users of R in many of the largest financial
companies in the world.
http://www.burns-stat.com/pages/Tutor/spreadsheet_addiction.html
is one place to look for arguments against Excel.
This was just updated to include an amusing
That's a good answer, but the usage is very much wider.
As Pat Burns has just replied while I was composing this, many (maybe
most) major financial institutions use R, although they may not want that
to be taken as an endorsement. Similarly for pharmaceuticals.
I would have thought a very
On 25-Sep-07 10:46:17, Eleni Rapsomaniki wrote:
Dear R users,
I have started work in a Statistics government department
and I am trying to convince my bosses to install R on our
computers (I can't do proper stats in Excel!!). They asked
me to prove that this is a widely used software (and
On 25-Sep-07 11:11:44, Patrick Burns wrote:
Just speaking of the field I'm most familiar with, there
are now users of R in many of the largest financial
companies in the world.
http://www.burns-stat.com/pages/Tutor/spreadsheet_addiction.html
is one place to look for arguments against
Eleni,
FWIW, there are a number of us in the U.S. NOAA/National Weather Service
and at the National Center for Atmospheric Research (NCAR) (who wrote
the 'Verification' package) who use R for verification of meteorological
and hydrologic forecasts, aiding in the calibration of distributed
On 9/25/2007 4:15 AM, Vladimir Eremeev wrote:
source'ing is a bad practice because this saves additional copies of
functions and data in the local workspace.
Wasting disk space is not a problem now since HDDs are cheap and function
bodies are generally small.
But, when you change any
Hello everybody
1. If there is/ever will be a function to perform duncan multiple range test
please inform me at once.
2. Is there a way to create a grouping as duncan does from TukeyHSD output? My
experimental design contained 62 genotypes, so the pairwise comparison is not
that usefull and
On Fri, 21 Sep 2007, Gabor Csardi wrote:
I don't know a way of loading parts of an .RData file either,
You can't easily do it, as named objects are not stored separately in such
a file (nor in memory in R). See the 'R Internals' manual for a
description of the format. This would be
On 25-Sep-07 12:34:47, Duncan Murdoch wrote:
On 9/25/2007 7:45 AM, (Ted Harding) wrote:
On 25-Sep-07 11:11:44, Patrick Burns wrote:
Just speaking of the field I'm most familiar with, there
are now users of R in many of the largest financial
companies in the world.
Hi all,
I would like to generate a erro bar plot. I have already the means and the
SE calculated.How could I plot these values with the means represented by
points and erro bars, one up another down, representing the +- the SE?
Thanks in advance,
Bets regards,
Caio
[[alternative HTML
Have a look at plotCI in the plotrix package.
--- Caio Azevedo [EMAIL PROTECTED] wrote:
Hi all,
I would like to generate a erro bar plot. I have
already the means and the
SE calculated.How could I plot these values with the
means represented by
points and erro bars, one up another down,
Statistical Computing and Statistical Graphics Sections
American Statistical Association
Student Paper Competition 2008
The Statistical Computing and Statistical Graphics Sections of the ASA
are co-sponsoring a student paper competition on the topics of
Statistical Computing and Statistical
but I can understand your desire to do
that. Perhaps just taking a static snapshot using something like
wget, and hosting that on the R-project website would be a good
compromise.
Hmm, wouldn't it be easier if the hosting institution would make a tgz
file? wget over HTTP is
Dear List-Members,
Is the application of multiple comparison procedures (using the multcomp
package) to the output from a rank-based ANOVA straightforward, or do I need
to take heed ?
That is, is it as simple as:
glht( aov(rank(NH4) ~ Site, data=mydat), linfct=mcp(Site=Tukey) )
Thanks in
Duncan Murdoch-2 wrote:
On 9/25/2007 4:15 AM, Vladimir Eremeev wrote:
source'ing is a bad practice because this saves additional copies of
functions and data in the local workspace.
Wasting disk space is not a problem now since HDDs are cheap and function
bodies are generally small.
Hello all,
This is a request for help from somebody who has the Ox interfaces working in R.
I am trying to get the Ox interfaces working for Arfima and Garch modelling.
However, I am having several problems:
1. The link to download [EMAIL PROTECTED] does not work. Does anybody have a
copy
Hi,
my x-axis contains labels that consist of two lines (the actual label
and below information about groupsize). Unfortunately, there is too
little spacing between labels and tickmarks in this situation. Is there
a parameter to tune spacing between axis and labels?
Thanks,
Chris
On Tue, 2007-09-25 at 15:39 +0200, Christian Schäfer wrote:
Hi,
my x-axis contains labels that consist of two lines (the actual label
and below information about groupsize). Unfortunately, there is too
little spacing between labels and tickmarks in this situation. Is there
a parameter to
On Tue, 25 Sep 2007, Martin Efferz wrote:
Is there a function which does a rolling calcualtion with 2 input vectors.
rollapply and rollFun seem to use only one input vector.
In rollapply(), you need to set by.column=FALSE, e.g.
## generate random series of true and predicted values
On Mon, 2007-09-24 at 21:36 -0400, Paek, Insu wrote:
Hello,
I am wondering if R has any ways to conduct the score test in logistic
regression?
Could you let me know please?
Thanks,
Insu
You may need to provide further clarification, as the most common
reference to a score test
Also look at the mgp option under ?par.
This allows one to set the margin line for axis title, axis labels and axis
line...
Regards,
Mark Difford.
Marc Schwartz wrote:
On Tue, 2007-09-25 at 15:39 +0200, Christian Schäfer wrote:
Hi,
my x-axis contains labels that consist of two lines
Hi, although this is a guess, I would dare to say that it is probably used
in at least some schools/departments of any research university. Yet,
universities/schools often have a plethora
of statistical softwares available (in our school, for instance, SAS, Stata,
SPSS, S-Plus) so it is not THE
(Ted Harding) wrote:
On 25-Sep-07 12:34:47, Duncan Murdoch wrote:
On 9/25/2007 7:45 AM, (Ted Harding) wrote:
On 25-Sep-07 11:11:44, Patrick Burns wrote:
Just speaking of the field I'm most familiar with, there
are now users of R in many of the largest financial
companies in the
On Tue, 25 Sep 2007, Jan M. Wiener wrote:
Hello,
thank you very much for the quick answer.
This works well. it draws a nice ellipse in the right orientation.
However, I doubt that the ellipse represents the 95% confidence
interval, even if that is the standard-parameter for level is .95.
Is there anyway to plot a matrix using a 3d bar plot. Something like
bar3 in matlab?
The example in demo hist3d does a 3d barplot for binned data, but has
anyone tried something for a simple matrix with spaces betwen bars
and axis labels using matrix dimnames or 1,2,3?
stages-letters[1:3]
Why do you want a 3d barchart? They are generally a bad way to
present information as tall bars can obscure short bars, and it is
hard to accurately read off the height of a bar. While adding
rotation can reduce some of these problems, why not create a graphic
that your viewers can take in with
On 9/25/2007 2:34 PM, stubben wrote:
Is there anyway to plot a matrix using a 3d bar plot. Something like
bar3 in matlab?
The example in demo hist3d does a 3d barplot for binned data, but has
anyone tried something for a simple matrix with spaces betwen bars
and axis labels using matrix
hadley wickham h.wickham at gmail.com writes:
Why do you want a 3d barchart? They are generally a bad way to
present information as tall bars can obscure short bars, and it is
hard to accurately read off the height of a bar. While adding
rotation can reduce some of these problems, why not
Just while I use R2Winbugs, the following error will be presented. Please
tell me how to cope with.
Error in file(file, r) : unable to open connection
In addition: Warning message:
cannot open file 'codaIndex.txt', reason 'No such file or directory' in:
file(file, r)
Thanks
Sam_zhz
--
View this
Just while I use R2Winbugs, the following error will be presented. Please
tell me how to cope with.
Error in file(file, r) : unable to open connection
In addition: Warning message:
cannot open file 'codaIndex.txt', reason 'No such file or directory' in:
file(file, r)
Thanks
Sam_zhz
--
View this
Just while I use R2Winbugs, the following error will be presented. Please
tell me how to cope with.
Error in file(file, r) : unable to open connection
In addition: Warning message:
cannot open file 'codaIndex.txt', reason 'No such file or directory' in:
file(file, r)
Thanks
Sam_zhz
--
View this
Just while I use R2Winbugs, the following error will be presented. Please
tell me how to cope with.
Error in file(file, r) : unable to open connection
In addition: Warning message:
cannot open file 'codaIndex.txt', reason 'No such file or directory' in:
file(file, r)
Thanks
Sam_zhz
--
View this
Just while I use R2Winbugs, the following error will be presented. Please
tell me how to cope with.
Error in file(file, r) : unable to open connection
In addition: Warning message:
cannot open file 'codaIndex.txt', reason 'No such file or directory' in:
file(file, r)
Thanks
Sam_zhz
--
View this
Just while I use R2Winbugs, the following error will be presented. Please
tell me how to cope with.
Error in file(file, r) : unable to open connection
In addition: Warning message:
cannot open file 'codaIndex.txt', reason 'No such file or directory' in:
file(file, r)
Thanks
Sam_zhz
--
View this
Duncan Murdoch murdoch at stats.uwo.ca writes:
That demo gives you the basics of the code, so it shouldn't be too hard
to put your own together: just strip out the counting part.
Thanks, I did download the source to check the hist3d demo, but honestly it
didn't look very easy to
Under freebsd 6.2 intel Duo, R 2.5.1 I can't update some packages (14 now)
because of a problem with -lgfortran, e.g.
update.packages(Hmisc)
...
* Installing *source*
Dear List,
I have an ascii text file with data I'd like to extract. Example:
Year Built: 1873 Gross Building Area: 578 sq ft
Total Rooms: 6 Living Area: 578 sq ft
There is a lot of data I'd like to ignore in each record, so I'm
hoping there is a way to use strings as delimiters to get the
have you seen help(strsplit)?
On Tue, 25 Sep 2007, lucy b wrote:
Dear List,
I have an ascii text file with data I'd like to extract. Example:
Year Built: 1873 Gross Building Area: 578 sq ft
Total Rooms: 6 Living Area: 578 sq ft
There is a lot of data I'd like to ignore in each
Perhaps you could clarify what the general rule is but assuming
that what you want is any word after a colon it can be done with
strapply in the gsubfn package like this:
Lines - c(Year Built: 1873 Gross Building Area: 578 sq ft,
Total Rooms: 6 Living Area: 578 sq ft)
library(gsubfn)
hadley wrote:
On 9/25/07, Chris Stubben [EMAIL PROTECTED] wrote:
hadley wickham h.wickham at gmail.com writes:
Why do you want a 3d barchart? They are generally a bad way to
present information as tall bars can obscure short bars, and it is
hard to accurately read off the height
#Hello,
#I have would like to paste a single column of a matrix
# in pair wise fashion with other columns based upon
# even and odd column numbers.
# I can do it in a very clunky fashion and I know there
# must be a better way. below is a sample matrix and my extremely
# clunky code that gets the
try this:
P.genotype.sample-matrix(10,10,10)
P.genotype.sample[,1]-c(2,2,1,5,1,1,5,6,1,3)
P.genotype.sample[,2]-c(6,3,3,6,8,1,6,7,2,3)
P.genotype.sample[,3]-c(2,2,2,3,3,2,2,2,3,3)
P.genotype.sample[,4]-c(2,8,8,3,8,2,8,3,4,3)
P.genotype.sample[,5]-c(3,3,8,3,6,1,1,1,1,3)
Hello Ani,
I am having the same problem with xtable and duplicate rownames. Would
it be possible for you to post your solution?
Best,
Sacha Kapoor
PhD Candidate
Department of Economics
University of Toronto
__
R-help@r-project.org mailing list
I've been a R-user for quite some time. The graphic on the home page
looks a bit in need of polish so I applied some antialiased
transformations that Peter Dalgaard has previously posted to R-help
for improving graphic quality. I had to change the margins a bit, but
here is what it looks like:
Although overall the new graphic looks better --- cleaner, clearer
--- I think that the
clustering graphic (tree, bottom left) has taken a step backward.
cheers,
Rolf Turner
On 26/09/2007, at 2:53 PM, Finny Kuruvilla wrote:
I've been
Hi - I would like to have the same functionality like what R(D)COM server
offers but from Java world. I have java code (on windows) and need to call some
R code to run some computational job and get the result back into java code.
I'm wondering if there's any direct package that offers this
Finny Kuruvilla [EMAIL PROTECTED] wrote:
I've been a R-user for quite some time. The graphic on the home page
looks a bit in need of polish so I applied some antialiased
transformations that Peter Dalgaard has previously posted to R-help
for improving graphic quality. I had to change the
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