On Sat, 10 Nov 2007, Martin Waller wrote:
> I think the subject line says it all.
Yes.
And I suppose you would also like to know where? Google gives
plenty of hints, and we see quite a few postings via nabble: look at
http://www.nabble.com/R-help-f13820.html
It is also on gmane.comp.lang.r.ge
Deng,
Spot on. This was the problem - now the file opens perfectly.
Thanks.
Bob
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and provide
Check your csv file if the first field is "ID". If so then change it to
something else or change it to "id".
Deng
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On
Behalf Of Bob Green
Sent: Saturday, November 10, 2007 7:32 PM
To: r-help@r-project.org
Subject: [R] read
Google for
CRAN sna
and the first hit gets you to it.
Or from within R:
library(sna)
efficiency
will list its code (but not its comments).
On Nov 10, 2007 1:44 PM, Reiny Song <[EMAIL PROTECTED]> wrote:
> Is anyone know some thing about sna package source code??
>
> I have a question about sna
I am wanting to read EXCEL files into R. In the past I have saved
EXCEL files as csv files without difficulty. Recently, when I have
saved the files in this format I am then unable to open them again in
EXCEL or though windows (XP). I receive a message stating - SYLK:
file format not valid.
Try:
http://news.gmane.org/gmane.comp.lang.r.general
http://www.nabble.com/R-f13819.html
On Nov 10, 2007 2:56 PM, Martin Waller <[EMAIL PROTECTED]> wrote:
> I think the subject line says it all.
>
> Martin
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It worked perfectly. Thank you very much.
¡¡¡Erís un wn entero seco, loco!!!
On Nov 10, 2007 8:41 PM, Gabor Grothendieck <[EMAIL PROTECTED]> wrote:
> Try this:
>
> axis(1, 1:22, paste(xaxislabels_1, xaxislabels_2, sep = "\n"), tcl = .3)
>
> On Nov 10, 2007 6:27 PM, Felipe <[EMAIL PROTECTED]> wro
Is anyone know some thing about sna package source code??
I have a question about sna source code,
I need some functions in R sna package,
so I check the source code.
There is a function called efficiency in sna package, but I didn't find the
any code about "efficiency",
anyone know it?
thank
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Hi Konstantinos
Since that Web service provides a WSDL file, then that it is the best
thing to use to generate an R function for each of the methods the Web
service exposes. See processWSDL and genSOAPClientInterface in the
SSOAP package for some
I think the subject line says it all.
Martin
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and provide commented, minimal, self-contained, r
Try this:
axis(1, 1:22, paste(xaxislabels_1, xaxislabels_2, sep = "\n"), tcl = .3)
On Nov 10, 2007 6:27 PM, Felipe <[EMAIL PROTECTED]> wrote:
> I have a protein sequence alignement and for each position of the
> alignement, I want to plot two values (one per sequence). Alignements look
> like thi
I have a protein sequence alignement and for each position of the
alignement, I want to plot two values (one per sequence). Alignements look
like this:
MVAFKGVWTQAFWKAVTAEFL
MCSISRKMAAEFI
So, data for the plot would be something like this
Prot 1 values: 1 5 2 7 4 3 5 6 8 2 2 7 6
On Sat, 10 Nov 2007, Anders Schwartz Corr wrote:
> I'm getting an error message using polr():
>
> Error in optim(start, fmin, gmin, method = "BFGS", hessian = Hess, ...) :
> initial value in 'vmmin' is not finite
>
> The outcome variable is ordinal and factored, and the independant variabl
Hi,
I'm getting an error message using polr():
Error in optim(start, fmin, gmin, method = "BFGS", hessian = Hess, ...) :
initial value in 'vmmin' is not finite
The outcome variable is ordinal and factored, and the independant variable
is continuous. I've checked the source code for bo
Hi, all,
since there are so many data companies in atlanta, I am wondering if
there is a useR group there, especially around alpharetta.
Thanks.
--
===
WenSui Liu
Statistical Project Manager
ChoicePoint Precision Marketing
(http://spaces.msn.com/statcompute/blog)
Thanks to all who corrected my misinformation!
Uwe Ligges
S Ellison wrote:
> Ermmm... from ?integrate
> "Description:
>
> Adaptive quadrature of functions of one variable over a finite or
> infinite interval."
>
> R maps infinite intervals to a finite interval before numerical integ
On 10-Nov-07 16:43:28, Ben Bolker wrote:
> affy snp wrote:
>> Hi Ted,
>> My matrix looks like:
>>
>>> dim(CGH)
>> [1] 238304243
>>> CGH[1:30,1:4]
>> WM806SignalA WM1716SignalA WM1862SignalA WM1963SignalA
>> SNP_A-1909444 1.59 1.48 1.78 2.59
>> S
Ermmm... from ?integrate
"Description:
Adaptive quadrature of functions of one variable over a finite or
infinite interval."
R maps infinite intervals to a finite interval before numerical integration,
provided that you tell it that the limits are infinite.
Using integrate() over mult
affy snp wrote:
>
> Hi Ted,
>
> My matrix looks like:
>
>> dim(CGH)
> [1] 238304243
>> CGH[1:30,1:4]
> WM806SignalA WM1716SignalA WM1862SignalA WM1963SignalA
> SNP_A-1909444 1.59 1.48 1.78 2.59
> SNP_A-2237149 2.24 1.87
On Nov 10, 2007 2:49 PM, affy snp <[EMAIL PROTECTED]> wrote:
> My matrix looks like:
>
> > dim(CGH)
> [1] 238304243
> > CGH[1:30,1:4]
> WM806SignalA WM1716SignalA WM1862SignalA WM1963SignalA
> SNP_A-1909444 1.59 1.48 1.78 2.59
> SNP_A-2237149
Hi Ted,
My matrix looks like:
> dim(CGH)
[1] 238304243
> CGH[1:30,1:4]
WM806SignalA WM1716SignalA WM1862SignalA WM1963SignalA
SNP_A-1909444 1.59 1.48 1.78 2.59
SNP_A-2237149 2.24 1.87 1.95 2.04
SNP_A-4303947
On Nov 9, 2007 1:15 PM, Rick Bilonick <[EMAIL PROTECTED]> wrote:
> On Fri, 2007-11-09 at 18:55 +, Prof Brian Ripley wrote:
>
> > I think Bert's point is important: I picked up a student on it in a case
> > study presentation on this week because I could think of three
> > interpretations, none
On Sat, 10 Nov 2007, Uwe Ligges wrote:
>
>
> Paul Smith wrote:
>> Dear All,
>>
>> Can R perform multivariate integration with infinite limits of integration?
>
> No, R does numerical (not symbolical) calculations, hence it can never
> perform integration (not even univariate) with infinite limits.
On Sat, 10 Nov 2007, [EMAIL PROTECTED] wrote:
> Dear R users
>
> I m planning to move to Linux to use R (currently under Win XPPro on a 32bit
> PC with 4 Go RAM), I have 2 questions:
> - is there a recommended "version/distribution" of Linux to run?R and
> Bioconductor packages: Fedora ? Ubuntu
On 10-Nov-07 14:25:32, affy snp wrote:
> Dear list,
> I am wondering how to log-2 based transform a matrix
> with numeric values?
> I tried > CGHlog2<-log2(CGH) but got an error. Then I
> found for log2(x) in R, the x has to be a numeric or
> complex vector. Any method for a matrix?
Yes, simply th
Hello,
I am a complete newbie to Web Services. I have set up an account to the MSN
Developer Services and have acquired a key for Live Search via SOAP. I want
to send and receive requests through R. I have already found out that the
two packages I need is RCurl and SSOAP. I have installed them bu
On Nov 10, 2007 2:25 PM, affy snp <[EMAIL PROTECTED]> wrote:
> I am wondering how to log-2 based transform a matrix with numeric values?
> I tried > CGHlog2<-log2(CGH) but got an error. Then I found for log2(x) in R,
> the x has to be a numeric or complex vector. Any method for a matrix?
One can u
Thanks all for the help and suggestions. By specifying the colClass in
read.table()
and running it on a server with 8Gb memory, I could have the data read
in 2 mins.
I will just skip sqldf method for now and get back in a moment.
Best,
Allen
On Nov 10, 2007 2:42 AM, Prof Brian Ripley <[EMA
Dear list,
I am wondering how to log-2 based transform a matrix with numeric values?
I tried > CGHlog2<-log2(CGH) but got an error. Then I found for log2(x) in R,
the x has to be a numeric or complex vector. Any method for a matrix?
Thanks a lot and have a good weekend!
Allen
>Error in Math.da
Gabor Grothendieck wrote:
> There is a commercial product Stat/Transfer that I haven't used
> that includes SPSS and R files on its list of files that it can
> convert.
Thanks, but it seems that Stat/Transfer does not support spss output
files (ie .spo), only the data files:
http://www.stattrans
Try this:
my.mat[my.mat > 0] <- table(my.mat)[-1][my.mat]
On Nov 10, 2007 8:19 AM, Milton Cezar Ribeiro <[EMAIL PROTECTED]> wrote:
> Hi R-gurus,
>
> I have a matrix which looks like
>
> 000
> 0111220
> 0111220
> 0111000
> 000
>
> As you can see we have non-zero level
On Nov 10, 2007 12:43 PM, Uwe Ligges <[EMAIL PROTECTED]> wrote:
> > Can R perform multivariate integration with infinite limits of integration?
>
> No, R does numerical (not symbolical) calculations, hence it can never
> perform integration (not even univariate) with infinite limits.
Not entirely
Dear All
Thanks for these pointers. odfweave looks the closest to what I need,
although the use case is not quite what I had in mind. Odfweave seems
to want you to write all your R code in an odf file and then process
this file in R.
What I have in mind is running all the code from a command
There is a commercial product Stat/Transfer that I haven't used
that includes SPSS and R files on its list of files that it can
convert.
On Nov 10, 2007 6:04 AM, Ivan Uemlianin <[EMAIL PROTECTED]> wrote:
> Dear All
>
> I am considering moving from SPSS to R as my stats environment of
> choice. I
Hi R-gurus,
I have a matrix which looks like
000
0111220
0111220
0111000
000
As you can see we have non-zero levels 1 and 2. I would like to fill an other
matrix with the frequency of non-zero levels in each cell. The results that I
need is
000
0999440
Thomas Steiner wrote:
> How can I choose the (line/plot) type "b"oth in the legend?
>
> plot(1:5,rnorm(1:5),type="b")
> legend("topright","random",lty=10)
For example by specifying "pch", e.g.:
legend("topright","random",lty=10, pch=1)
Uwe Ligges
> Thanks,
> Thomas
>
> _
Paul Smith wrote:
> Dear All,
>
> Can R perform multivariate integration with infinite limits of integration?
No, R does numerical (not symbolical) calculations, hence it can never
perform integration (not even univariate) with infinite limits.
Uwe Ligges
> Thanks in advance,
>
> Paul
>
[EMAIL PROTECTED] wrote:
> Dear R users
>
> I m planning to move to Linux to use R (currently under Win XPPro on a 32bit
> PC with 4 Go RAM), I have 2 questions:
> - is there a recommended "version/distribution" of Linux to run?R and
> Bioconductor packages: Fedora ? Ubuntu ? Suse ? Debian ?
On 11/10/07, Chuck Cleland <[EMAIL PROTECTED]> wrote:
> RSiteSearch("SPSS", restrict="function") shows nothing relevant to
> *.spo files. I don't think you will ever see an R *.spo writer. You
> might look into one or more of the following to produce accessible and
> attractive output for clien
How can I choose the (line/plot) type "b"oth in the legend?
plot(1:5,rnorm(1:5),type="b")
legend("topright","random",lty=10)
Thanks,
Thomas
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PLEASE do read the posting gui
Ivan Uemlianin wrote:
> Dear All
>
> I am considering moving from SPSS to R as my stats environment of
> choice. I have read around and everything looks favourable. There is
> just one issue on which I have been unable to find information.
>
> Many clients ask me to send them output (tables,
Dear R users
I m planning to move to Linux to use R (currently under Win XPPro on a 32bit PC
with 4 Go RAM), I have 2 questions:
- is there a recommended "version/distribution" of Linux to run?R and
Bioconductor packages: Fedora ? Ubuntu ? Suse ? Debian ?
- Regarding Fedora, I see that now it is
Dear All
I am considering moving from SPSS to R as my stats environment of
choice. I have read around and everything looks favourable. There is
just one issue on which I have been unable to find information.
Many clients ask me to send them output (tables, graphs, etc) as an spss
output file
Rick Bilonick nauticom.net> writes:
...
> I think prediction interval is what is usually used. Regardless, I'm not
> sure how "predict.lm" will be of much help because I asked specifically
> about BLUP's for random effects and the last time I checked lm did not
> handle mixed effects models. Neith
On Fri, 2007-11-09 at 06:58 -0800, Joao Santos wrote:
> Hello,
>
> EXAMPLE
> ##Create time series
> bb_500 = scan("my_file.dat")
> ts <- ts(bb_500, frequency=168)
>
> ts
> Time Series:
> Start = c(1, 1)
> End = c(3, 164)
> Frequency = 168
> [1] 61 60 60 59 58 58 58 58 58 61 64 65 65 64 64 6
On 09-Nov-07 23:11:02, [EMAIL PROTECTED] wrote:
> Hi,
>
> I would like to know if there is any algorithm in R for transforming
> Binary data sets. I want something like taking all the zeros and giving
> them some negative value, for example -5, and taking all ones and
> giving them some positive v
Johan Jackson gmail.com> writes:
>
> In a regression equation not accounting for the fact that people are
> nested in families, the result for Z variable is VERY strong (beta =
> -4511), but this result is much weaker when I use lme and account for
> people nested in families (beta = -2613). I'
Hi,
I would like to know if there is any algorithm in R for transforming Binary
data sets. I want something like taking all the zeros and giving them some
negative value, for example -5, and taking all ones and giving them some
positive value, if it had been given -5 for zeros it would be 5 fo
Hi Johan,
it's not clear to me that we have enough information to answer your
question reliably, but the following thoughts might be useful to you.
1) in your lme() model, all the coefficients are closer to zero than
in your lm() model.
2) the change in Z is not very large relative to its sta
On Thu, 2007-11-08 at 10:19 +0200, sigalit mangut-leiba wrote:
> hello,
> I have a problem in how to generate data in a simulation study.
> I have a logistic model to evaluate p by 3 covariates.
> I need to generate 4 variables: the binary outcome Y and 3 covariates:
> gender (binary) and aps and
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