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---
Jeff NewmillerThe . . Go Live...
DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go...
HI,
I guess it is a bit confusing as to what you want. In the example dataset,
there was no democracy_index, but in the result you want it. Regarding the
median calculation, I guess you want to calculate the median for each country.
I created one more country (China) with fake data.
May
Hi again, Duncan:
I understand you tell me, but I don't reach it runs in Mac. How must I do?.
Thanks.
Eva
--- El sáb, 27/10/12, Duncan Murdoch murdoch.dun...@gmail.com escribió:
De: Duncan Murdoch murdoch.dun...@gmail.com
Asunto: Re: [R] Encoding
Para: Eva Prieto Castro evapcas...@yahoo.es
Hi All,
I'm trying to run a simulation of host-pathogen evolution based around
individuals.
What I need to have is a dataframe or table of some description - describing
all the individuals of a pathogen population (so far I've implemented this as a
matrix):
ID No_of_Effectors
Hi Arun,
Thanks for replying.
Sorry I didn't list it, I do have democracy index in my dataset.
The full set includes these columns:
Country Code (3 letter abbreviation)
Country
Education
Freedom house demo index
log population
log real gdp
nominal savings
polity demo index
year (5 yr
On 10/27/2012 12:48 AM, MartinD wrote:
Hello,
I am using the polar.plot function from plotrix.
Is there a way to change the width of the grid lines?
grid.lwd doesn't work
Hi Martin,
At the moment, there is no option for changing the width of the grid
lines. However, I have had a
Hi Jeff,
Sorry for the misunderstanding. I may have phrased my question as such, but
my intention is really learn the workings of R. I am trying to replicate the
results from an econometric paper in R, and I don't have any experience.
I will reconsider my posts in the future.
Regards,
--
On 12-10-28 3:49 AM, Eva Prieto Castro wrote:
Hi again, Duncan:
I understand you tell me, but I don't reach it runs in Mac. How must I do?.
There is a function in the tools package called showNonASCIIfile. If
you run it on each source file in your package, you may detect other
non-ASCII
On 12-10-28 7:56 AM, Eva Prieto Castro wrote:
Hi Duncan,
What dos it happen if I need use non-ASCII characters?. Is there no way
in order to make the package in Windows PC and it runs on Mac?.
As I said: always use the same encoding for them, and declare it in the
DESCRIPTION file. See
Dear useRs,i am applying mantel test to find the correlation between distance
matrices, by ade4 package. some of the correlations, although given me
r-values, have shown following warning message..
In is.euclid(m2) : Zero distance(s)
i wanted to know that why has this message prompted? although
On 28.10.2012 10:32, Benjamin Ward (ENV) wrote:
Hi All,
I'm trying to run a simulation of host-pathogen evolution based around
individuals.
What I need to have is a dataframe or table of some description - describing
all the individuals of a pathogen population (so far I've implemented this
Search on ragged array.
My preferred approach is to use a data frame with one row per effector that
repeats the per-ID information. If that occupies too much memory, you can setup
another data frame with one row per ID and refer to that information as using
lapply and subset the effectors
On 12-10-28 10:57 AM, Eva Prieto Castro wrote:
Hi Duncan:
The problem is that in Windows I can't do the source() with
encoding=utf-8, so I don't reach the step of adjusting DESCRIPTION file.
The DESCRIPTION file is a plain text file, not R code. You don't need
to source() it, you just edit
Hi,
I wanted to use R's lbfgsb method for minimization from C. Unfortunately,
my toy examples always crashes (segmentation fault). What's wrong with it?
double eval(int n, double* par, void *ex) {
double result = 0;
for (int i=0; in; ++i) {
result += par[i]*par[i];
}
Hi Duncan,
What dos it happen if I need use non-ASCII characters?. Is there no way in
order to make the package in Windows PC and it runs on Mac?.
I am lost, very lost.
Thanks.
Eva
--- El dom, 28/10/12, Duncan Murdoch murdoch.dun...@gmail.com escribió:
De: Duncan Murdoch
nobody? please
-
Mario Garrido Escudero
PhD student
Dpto. de Biología Animal, Ecología, Parasitología, Edafología y Qca. Agrícola
Universidad de Salamanca
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Sent
Hi Sara,
Not very clear either.
You mentioned you want to repeat the sum 5 times. Is it on the same x variable
or different x variables?
If you want to repeat the sum 5 times on the same x variable,
x1-c(.3,.2,.1)
fun1-function(x,i){
res-lapply(1:i,function(y) -sum(log(1-x^2)))
Hi I have trouble making a best fitted curve for a xy-plot. My data consist
of two groups with four repititions for each x-value.
plot(weight~gdd,data=weight,pch=as.numeric(species))
http://r.789695.n4.nabble.com/file/n4647692/Weight.jpeg
Can you help?
Cecilie
--
View this message in
Hi,
In addition to using paste(), you can also try this:
dat1-data.frame(ID=formatC(0001:0010,width=4,flag=0),No_of_Effectors=rep(3,10))
dat1-within(dat1,{ID-as.character(ID)})
list1-lapply(1:nrow(dat1),function(x) sample(1:1,3,replace=TRUE))
dat2-data.frame(dat1,Effectors=I(list1))
Hi Duncan:
The problem is that in Windows I can't do the source() with encoding=utf-8,
so I don't reach the step of adjusting DESCRIPTION file.
Eva
--- El dom, 28/10/12, Duncan Murdoch murdoch.dun...@gmail.com escribió:
De: Duncan Murdoch murdoch.dun...@gmail.com
Asunto: Re: [R] Encoding
Hello R-help,
Thanks to everyone for the prompt replies.
Yes. I didn't reinstal the Hmisc package after updating R to the recent version.
This worked. Thank you so, much!
I'm relieved that I was able to update my charts just prior to my presentation.
You'll are awesome.
Best Regards,
Franklin
HI,
May be this helps.
dat1-data.frame(ID=formatC(0001:0010,width=4,flag=0),No_of_Effectors=rep(3,10))
dat1-within(dat1,{ID-as.character(ID)})
list1-lapply(1:nrow(dat1),function(x)
paste(sample(1:1,3,replace=TRUE)),sep=,)
Looking at that data, it looks like the two species respond differently to
GDD. Fitting a curve means first defining and then fitting a model that,
once fit, has fitted values that will give you the curve that you wold like
to draw.
The simplest would be a series regression with interaction
I was able to answer a few of my question on my own. The units for the Y-axis
can be set to days with the following:
/fpt(fit1, seq(length=5), units=days)
/
This sets the y-axis units to 'days', defines the number of radii (5), and
removes the scaling function that wasn't really necessary for my
Hello,
You had enough answers to variants of this question to already know to
open a graphics device once and _just_ once using plot() and then, in
the loop, use points().
plot(1, type = n, xlim = c(0, 20), ylim = c(0, 8),
ylab=sample mean, xlab=sample size)
for (i in seq(1:20)){
Hi there,
I am really new to statistics in R and statistics itself as well.
My situation: I ran a lot of OLS regressions with different independent
variables. (using the lm() function).
After having done that, I know there is endogeneity due to omitted
variables. (or perhaps due to any other
HI Mario,
I think you will get more response if you post at R mixed models
(r-sig-mixed-mod...@r-project.org) mailing list.
A.k.
- Original Message -
From: gaiarrido gaiarr...@usal.es
To: r-help@r-project.org
Cc:
Sent: Sunday, October 28, 2012 7:42 AM
Subject: Re: [R] interpreting
1. These are primarily statistics issues, not R issues. You should
post on a statistical help list like stats.stackexchange.com, not
here.
2. However, given your acknowledged statistical ignorance, you may be
asking for trouble. I suggest you seek help from a local statistical
expert to get you
Dear all,
I want to obtain the following result
[[1]]
, , 1, 1
[,1] [,2]
[1,]11
[2,]11
, , 2, 1
[,1] [,2]
[1,]11
[2,]11
, , 9, 1
[,1] [,2]
[1,]11
[2,]11
, , 10, 1
[,1] [,2]
[1,]11
[2,]11
Hi,
I can think of no reason a Hausman test could not be used for OLS---it is a
comparison of vectors of coefficients from different models usually assumed
to produce similar estimates under certain conditions. Dissimilarity is
taken as indicative of a lack of some or all the conditions required
Your example is hard to understand because it includes multiple copies of
the
number 1. Let me do something with different values and see if it gets
what
you are after. Your code as posted can't work because the variable n is not
defined.
result - list(a=array(1:48, dim=c(2,2,3,4)),
I am refreshing the code for the problem
x = c( 4 , 4 , 0 )
y = c( 1 , 0 , 2 )
t = c( 1 , 2, 2 )
r-as.vector(table(t))
Nx-vector(list,length(unique(t)))
Ny-vector(list,length(unique(t)))
n-vector(list,length(unique(t)))
for(i in 1:length(unique(t))){
Hi, All,
My data collection is from 4 regions (a, b, c, d). Within each region, it has 2
or 3 units. Within each unit, it has measurement from about 25 sample site. I
was trying to use lme function to discribe relationship between y and a few
covariates. Both y and covariates were measured at
This time the code works, except for the spurious } at the end.
I still don't know what the goal is.
Please help yourself and us by putting spaces around assignment arrows
a - b
instead of the hard-to-read
a-b
and putting spaces after ,
## Let
a - 12
## Does
a-3
## mean
a - 3
## or
a -3
## ?
x = c( 4 , 4 , 0 )
y = c( 1 , 0 , 2 )
t = c( 1 , 2, 2 )
r - as.vector(table(t))
Nx - vector(list,length(unique(t)))
Ny - vector(list,length(unique(t)))
n - vector(list,length(unique(t)))
for(i in 1:length(unique(t))){
Nx[[i]] - array(0,dim=c(1,r[i],1))+x[t==i]+1
Ny[[i]] -
A look at the R data import/export page supplied in the R HTML help system (see
the link at top left) says that stata files are handled by the foreign package.
S Ellison
From: r-help-boun...@r-project.org [r-help-boun...@r-project.org] On Behalf Of
You ought to contact the package author or try the specialist lists animov
or R -Sig-Geo for this topic.
Cheers, Mike
On Monday, October 29, 2012, zlong wrote:
I was able to answer a few of my question on my own. The units for the
Y-axis
can be set to days with the following:
/fpt(fit1,
Hello list,
I am running a regression using
lm(Y~A+B+log(C)+log(D))
Now, I would like to test if glm can produce similar results.
So the code was revised as
glm(Y~A+B+C+D, family=poisson) (code 1)
However, I found some example using glm for lm.
It suggests that the code should be revised
Hi Elaine,
If you want identical models, you need to use the same family and then
the formula is the same. Here is an example with a built in dataset:
## these two are identical
coef(lm(mpg ~ hp + log(wt), data = mtcars))
(Intercept) hp log(wt)
38.86095585 -0.02808968
Hi Josh and Elaine: John Fox's CAR book ( the companion to his applied
regression text ) is really great for implementing GLMs in R. It also has a
brief but quality discussion of the theory
behind them. His text goes into more detail. Dobson's Introduction to
generalized linear models is also
If your goal is to use Excel with R, or if you are having difficulty getting
Lifehacker to work with Excel, perhaps you should go to
http://rcom.univie.ac.at/. You don't need Lifehacker to use Excel with R,
though (as you stated your problem). That just needs Statconn (which is off
topic
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