Re: [R] My problem with R

2014-01-24 Thread PIKAL Petr
Hi Maybe it is time to read what I wrote below. And also documentation. from cbind vectors or matrices. These can be given as named arguments. Other R objects will be coerced as appropriate: see sections 'Details' and 'Value'. (For the data.frame method of cbind these can be further arguments

[R] Plotly Beta: Online Plotting with R

2014-01-24 Thread Matt Sundquist
Hi R Users, My name is Matt, and I'm a part of Plotly http://plot.ly. We recently released an R plotting library http://plot.ly/api/r for making publication-quality graphs online. We wanted to let the folks on this list know. A basic summary: - Make publication-quality, online plots with a GUI

Re: [R] My problem with R

2014-01-24 Thread PIKAL Petr
Yes Why difference in the result? rbind and cbind function are something wrong? Or I, am something wrong? you are something wrong. see below From: Lee Marine [mailto:marine1...@gmail.com] Sent: Friday, January 24, 2014 9:04 AM To: PIKAL Petr Subject: Re: [R] My problem with R Sorry,

Re: [R] subset and na.rm not really suppressing NA values

2014-01-24 Thread peter dalgaard
subset.data.frame() does not have an na.rm argument! -pd On 23 Jan 2014, at 00:58 , Jeff Johnson mrjeffto...@gmail.com wrote: I have a dataset mydf with a field EMAIL_ADDRESS. When importing, I specified: mydf - read.csv(file = extract, header = TRUE, stringsAsFactors = FALSE,

Re: [R] degrees of freedom

2014-01-24 Thread Søren Højsgaard
As a supplement to Bens reply: The pbkrtest package allows calculation of degrees of freedom by the Kenward-Roger method; something like library(lme4) model1 - lmer(value~group + (1|animal), data=bip) summary(model1) anova(model1) model0 - update(model1, .~.-group) anova(model1, model0)

Re: [R] complicated IF

2014-01-24 Thread Jim Holtman
this is an anomonous function definition and .week is just the name of the parameter I chose to use. As with any function definition, you can name the parameters any way you want. In this case I have used the '.' to start the name just to make it apparent that it is a parameter; personal

Re: [R] Safe prediction does not work for bivariate polynomial terms?

2014-01-24 Thread Prof Brian Ripley
On 24/01/2014 02:09, Xing Zhao wrote: Hi everyone, R documents says the safe prediction is implemented, when basis functions are used, such as poly(), bs(), ns() This works for univariate basis, but fails in my bivariate polynomial setting. Can anyone explain the reason? Because there is a

Re: [R] Biology package install error

2014-01-24 Thread Duncan Mackay
Hi Allison I had a quick look at the site and it appears that the compiled versions and they are for operating systems with R installed to ver 2.15 However there is a zip file for all or individual R snippets etc. If you want to download them and unzip the individual/all chapters and work from

[R] keep track of variables created in each chapter of a knitr book

2014-01-24 Thread Michael Friendly
In a book project using knitr, I'm creating a large number of variable and objects in chunks within chapters. I'd like to find a way of keeping track of all of those for each chapter, and clean up at the end of each chapter, without having to manually list their names as shown below. The

Re: [R] keep track of variables created in each chapter of a knitr book

2014-01-24 Thread Ista Zahn
I'm not sure what exactly you want to remove in the cleanup step, but to list the objects assigned in a particular chapter can't you just put prev.vars - ls() at the beginning of the chapter and vars.this.chapter - setdiff(ls(), prev.vars) at the end? Best, Ista On Fri, Jan 24, 2014 at 9:14

Re: [R] Deleting subsequences from a string sequence

2014-01-24 Thread arun
HI, I am sorry.  I didn't test it properly. Check if this works. (But, you already got Hervé's solution). For ##2 eyaSpl2 - rep(#,sum(length(eyaSpl),length(CDS1[,1]))) ##as in previous code indx - CDS1[,1]+rep(seq(0,length(CDS1[,1]),by=2),each=2)[-c(1,40)] eyaSpl2[-indx] - eyaSpl ###testing

[R] How to read this data correctly

2014-01-24 Thread Christofer Bogaso
Hi again, I need to read below xlsx file correctly (available here: http://snk.to/f-ch3exae5), and used following code (say, file is saved in F: drive) library(gdata) read.xls(f:/Book1.xlsx, 1, header = F) V1 1 -0.419547704894512 2 -[$Â¥-411]0.42 However please notice

Re: [R] How to read this data correctly

2014-01-24 Thread Rui Barradas
Hello, Cell F7 has a formula, =F4, and when I open the file in excel, I get -¥0.42, which shouldn't read properly in R. The problem seems to be in the file, not in read.xls. Hope this helps, Rui Barradas Em 24-01-2014 19:22, Christofer Bogaso escreveu: Hi again, I need to read below xlsx

Re: [R] Help with importing scripts within the same package?

2014-01-24 Thread MacQueen, Don
As Jeff Newmiller and Duncon Murdoch indicated, you can't modify the contents of one part of a loaded package on the fly, and have the other parts of the loaded package recognize the modifications. It's just not set up that way. You have to repeat the build and install steps. However, the

Re: [R] How to read this data correctly

2014-01-24 Thread Christofer Bogaso
Hi Rui, Thanks for your reply. However why you said, 'shouldn't read properly in R'? Basically I was looking for some way so that I would get -0.419547704894512 value in R against cell F4 F7. Because F7 is linked with F4. Ofcourse I can open Excel file then format that cell accordingly.

Re: [R] How to read this data correctly

2014-01-24 Thread Rui Barradas
^Hello, Inline. Em 24-01-2014 20:49, Christofer Bogaso escreveu: Hi Rui, Thanks for your reply. However why you said, 'shouldn't read properly in R'? I've said this because I don't know if a cell with a formula can be read in R. Also, because when I've opened it in excel, there was some

Re: [R] How to read this data correctly

2014-01-24 Thread arun
Hi, I am getting this: read.xls(Book1.xlsx,1,header=F) #  V1 #1 -0.4195477 #2 -0.4195477 sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-unknown-linux-gnu (64-bit) attached base packages: [1] stats graphics  grDevices utils datasets  methods   base other

Re: [R] My problem with R

2014-01-24 Thread Rolf Turner
On 24/01/14 21:30, PIKAL Petr wrote: SNIP Why difference in the result? rbind and cbind function are something wrong? Or I, am something wrong? you are something wrong. Fortune? cheers, Rolf __ R-help@r-project.org mailing list

Re: [R] How to read this data correctly

2014-01-24 Thread Marc Schwartz
Hi, I don't know that it is a problem in R reading the file per se. It is more of an issue, as far as I can see, that read.xls() is not written to deal with some aspects of cell formatting of certain types. In this case, the cell is formatted using a financial format with Japanese Yen. I did

[R] readLines() behavior is really strange

2014-01-24 Thread chris warth
This might also be titled, How do I use R as a streaming process? I would like to use R as a streaming processor, but it seems to have trouble capturing all the input. Can someone explain why this script skips the first few lines of input? Is this a bug in R or some interaction with line

[R] RSA and lmer

2014-01-24 Thread Pablo Ignacio Escribano Pinto
Hi all! I am currently working on a paper where I conduct a surface analysis based on subordinate and supervisor responses. So far I have been using the RSA package and it works great. However, because several subordinates share a common supervisor, the RSA object that I need to estimate needs

Re: [R] Problems with a R-packages

2014-01-24 Thread Andreas Rybicki
Bill, Thanks for your answer. With your advise I was able to download ‘rjags’, ‘logspline’. Especially your tip install dependencies was extremely helpful AND certainly made it work. Could I outline in this respect the following, please? I also was able to install Xcode, because The package

[R] Regression on presence/absence matrix

2014-01-24 Thread Daniel Patón Domínguez
Dear all: I want to predict a presence/absence vector using a presence/absence matrix of events. What library can do this in R? Many thanks -- Daniel Patón Domínguez Numerical Ecology. Ecology Unit Department of Plant Biology,

[R] reversed variables in stats::reshape()

2014-01-24 Thread Doug Morrison
Dear R-Help readers, I am writing to ask about some behavior by stats::reshape() that surprised me. In the example below, I expected the values of variables R and L in data.frame test to be the reverse of what they are - ie I expected that test$R = seq(1:29, by =2) and test$L = seq(2:30, by = 2).

Re: [R] Regression on presence/absence matrix

2014-01-24 Thread Greg Snow
The library of packages that installs with R includes the stats package, in the stats package is the glm function for fitting generalized linear models. Using glm with a binomial family will fit a logistic regression which can be used as you describe. If you really feel the need to use an

Re: [R] My problem with R

2014-01-24 Thread Göran Broström
On 1/24/14 10:44 PM, Rolf Turner wrote: On 24/01/14 21:30, PIKAL Petr wrote: SNIP Why difference in the result? rbind and cbind function are something wrong? Or I, am something wrong? you are something wrong. Fortune? No. Göran cheers, Rolf

Re: [R] Regression on presence/absence matrix

2014-01-24 Thread Rolf Turner
On 25/01/14 00:41, Daniel Patón Domínguez wrote: Dear all: I want to predict a presence/absence vector using a presence/absence matrix of events. What library can do this in R? I will answer your question only if you learn to say ***package*** and NOT library. The library() function loads

Re: [R] Regression on presence/absence matrix

2014-01-24 Thread Bert Gunter
Rolf et.al: Actually, as I think the query indicates a wholly insufficient statistical background, this question probably should go to SO (stats.stackexchange.com) rather than here. Even if he is told the package (or function in this case) , he is unlikely to be able to use it properly. Cheers,

Re: [R] reversed variables in stats::reshape()

2014-01-24 Thread arun
Hi, You can change varying1 to: varying1 = list(seq(3,ncol(data1),2), seq(4,ncol(data1),2))#and then try it on your code test = reshape(     data = data1,     direction = long,     idvar = c(Participant,Treatment),     v.names = c(R,L),     times= seq(2, 30, by = 2),    

Re: [R] reversed variables in stats::reshape()

2014-01-24 Thread arun
Another way would be to change the colnames() colnames(data1)[grep(min,colnames(data1))] - gsub((\\d+)\\D+(\\w+)$,\\2_\\1,colnames(data1)[grep(min,colnames(data1))]) varying1 - colnames(data1)[3:32] test2 - reshape(     data = data1,     direction = long,     idvar =

[R] R 3.0.2 How to Split-Apply-Combine using various Columns

2014-01-24 Thread umair durrani
Hello everyone, I have a large vehicle trajectory data of which following is a small part: vehicle frame globalx class velocity