Hello all!
Has anyone modified SKAT or another rare variant analysis packages to
incorporate a subject's sampling weight? I am trying to analyze genetic data
from a study that chose a) all people from a previous ancillary study; b) those
with an atypical diagnosis; and c) a small number of
Dear,
cannot find a way to direct multipanel plots to different figures
(files) while within a loop.
Say, the loop creates two plots each step: one plot should go to figure
1 and the other to figure 2.
Same for the next steps of the loop: the plots should go to figure 1
and figure 2 in a
Dear R users.
I would like to remove all object from my workspace except the function I have
defined. However, is I use rm(list = ls()) everything is cleared. I was
thinking to typeof to get information about objects, but I could not get it
working right.
Thank in advance,
Phil
Hi,
I'm new to R (was using Matlab previously)
Matlab has a very convenient utility that I haven't been able to find in R.
When working interactively, you can find a previous command that starts with a
certain letter by typing such a letter and then pressing the cursor up key. In
R I've seen
On 2/19/2015 8:06 AM, Barry Rowlingson wrote:
On Wed, Feb 18, 2015 at 11:44 AM, Mittal Ashra via R-help
r-help@r-project.org wrote:
Dear All,
Apologies for mailing it to the whole crowd. This is Mittal, presently
working in a Project where we have build a platform for displaying
On 19 Feb 2015 20:11, Robert Baer rb...@atsu.edu wrote:
On 2/19/2015 8:06 AM, Barry Rowlingson wrote:
On Wed, Feb 18, 2015 at 11:44 AM, Mittal Ashra via R-help
r-help@r-project.org wrote:
Dear All,
Apologies for mailing it to the whole crowd. This is Mittal, presently
working in a Project
Hi Nicholas,
I am not sure how much the following link can help but at least it is
related to your question.
http://r.789695.n4.nabble.com/Reading-Chinese-Language-GB2312-Input-td4647581.html
Good luck!
JS
--
View this message in context:
Hi again,
Just to clarify my question from previous email...
Example script:
A - data[, c(1,2,3,4)]
B - data[, c(5,6,7,8)]
library(vegan)
vare.proc - procrustes(A,B, scale=FALSE, symmetric=FALSE)
vare.proc
summary(vare.proc)
plot(vare.proc)
#plot(vare.proc, kind=2)
residuals(vare.proc)
Without (example) code it is hard to follow... use ?dput to present
some data (subset).
But if it is data.frames you are dealing with (for sure with read.csv,
but not so sure at all with raster maps), give this a try:
?merge
On 19 February 2015 at 17:44, Simon Tarr simon.t...@adtrak.co.uk wrote:
Hi R user,
I was trying to convert raster images into *kasc format using adehabitat
package in R. but I could not convert it. I spent a lot of time but no luck.
would you mind to give some hints to convert this example data?.
I would really appreciate for your help.
cheers,
AS
#
Hi Everyone,
I'm working on a thorny subsetting problem involving list of lists. I've put a
dput of the data here:
https://gist.githubusercontent.com/aronlindberg/b916dee897d051ac5be5/raw/a78cbf873a7e865c3173f943ff6309ea688c653b/dput
I can get one intense of the element I want this
I have a data set that includes the identity of a number of Video Coders
who scored participants' behaviors in a video. Every participant was scored
once, but some participants were randomly assigned to have their data
scored twice so I could calculate inter-rater reliabilities. I have
completed
Hello All,
I'm new to this mailing list, so please let me know if I've committed any
posting faux-pas.
I'm working on an assignment for my Coursera course; please see my code
below in which I have tried to write two functions--to perform the task of
matrix inversion and then caching that data.
There is a function keep() in package gdata for this purpose
Le 19 févr. 2015 à 10:25, philippe massicotte pmassico...@hotmail.com a écrit
:
Dear R users.
I would like to remove all object from my workspace except the function I
have defined. However, is I use rm(list = ls()) everything
On 18/02/2015 5:06 PM, CasasPrat,Merce [Ontario] wrote:
Hi,
I'm new to R (was using Matlab previously)
Matlab has a very convenient utility that I haven't been able to find in R.
When working interactively, you can find a previous command that starts with
a certain letter by typing such
Hi efisio,
I read this as wanting to start a new graphics device, then set some plot
parameters, display two plots and then close the graphics device at each
iteration of the loop. If so,
plot_filenames-c(plot1.png,plot2.png,plot3.png)
for(plotfn in plot_filenames) {
png(plotfn)
Thanks Jim,
actually I need to keep open two devices at the same time, and within
the loop access either of them in alternation. In MatLab there is the
command Figure(#) which keeps track of the open devices and direct the
output of the plot to whichever of them.
For example:
Hi efisio,
Okay, you can switch devices using the dev.* functions in the grDevices
package. If you only have two devices open at one time, this is not too
difficult:
#open both devices
png(...)
par(mfrow=c(1,2))
png(...)
par(mfrow=c(1,2))
hist(...)
dev.set(dev.next())
hist(...)
Any suggestions :( ??From: cute_loo...@hotmail.com
To: r-help@r-project.org
Subject: Metro_Hastings I wrote my code again
Date: Sun, 15 Feb 2015 21:47:25 +0300
Hi again :)
I wrote my code here:
library(MHadaptive)
baysianlog=function (param,data)
{ alpha=param[1]
Dear list
I have data from a collaborator who has used DesignExpert to design the
experiment and analyse the data but no longer has access to this software and
does not know exactly what the software did and why.
So I’m now trying to analyse the data in R but can't quite decide what to do.
On Wed, Feb 18, 2015 at 11:44 AM, Mittal Ashra via R-help
r-help@r-project.org wrote:
Dear All,
Apologies for mailing it to the whole crowd. This is Mittal, presently
working in a Project where we have build a platform for displaying
recommendations and the results are based on the
Hi,
I tried your file in my Windows7 pc. It worked fine except the display of
the variable name.
R version 3.1.2 (2014-10-31) -- Pumpkin Helmet
Copyright (C) 2014 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
Hello - read.csv(Hello.csv);Hello
One of my favorite blogs (AnalyzeCore) uses the dplyr library which fails
in my environment (R 3.0.2.) I've tried upgrading my R package to get
around this issue, to no avail. I know I'm making a simple mistake but
haven't solved it. A simple $ sudo apt-get install r-base --upgrade
didn't get the
This worked for me the last time I tried it and I'm running Ubuntu 14.04. (Note
to self-time to upgrade to 14.10)
Installing or updating R
sudo add-apt-repository ppa:marutter/rrutter
sudo apt-get update
sudo apt-get install r-base r-base-dev
from
Dear all,
I´m trying to perform a modeling with Maxent, but I keep getting the
Warning message: running command 'java' had status 1.
I reinstalled Java jdk, I raised the memory to 1024, but it still gives me
the same Warning message. I´m testing with the data from
the
https://github.com/hadley/devtools/wiki/Reproducibility
http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example
John Kane
Kingston ON Canada
-Original Message-
From: jmadi...@yahoo.fr
Sent: Tue, 17 Feb 2015 16:46:34 + (UTC)
To:
Hi Tara,
Providing a simple example script that reproduces your case and using
it to support your question would increase your chances to obtain an
answer.
Best,
Pierrick
On Thu, Feb 19, 2015 at 5:43 PM, Tara Dirilgen
tara.diril...@ucdconnect.ie wrote:
I have been using R to calculate the
Hello everyone,
I need a little help with some R syntax to complete what (I think) is a
fairly straightforward task- hopefully someone can assist!
I have a raster map of the UK which is split into postcode areas (e.g. DE,
NG, NR etc. 127 postcodes in total).
I have installed the package
Ah yes, with the full data set that looks rather good, indeed. I tried it with
the simulated data but there was not enough variation in the data to give any
useful indication of what was happening.
RE the quartile information, I don't know, it might be of use but it also might
add to much
I have been using R to calculate the significance of Procrustes
correlations. With one series of data, where there are five cases, the
value returned for the correlation coefficient is one although there are
differences as shown by the procrustes error graph. Is there a statistical
reason for
-Original Message-
From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Chad
Danyluck
Sent: Thursday, February 19, 2015 12:33 PM
To: r-help@r-project.org
Subject: Re: [R] Averaging column scores when participants vary in
number of observations
I have a data set that
On 20/02/15 08:45, Aron Lindberg wrote:
Hi Everyone,
I'm working on a thorny subsetting problem involving list of lists.
If you think this is thorny you ain't seen nothin' yet!
But note that you've got a list of lists of lists ... i.e. the nesting
is at least 3 deep.
I've put a dput of
On 19/02/2015 3:13 PM, Samuel Colon wrote:
Hello All,
I'm new to this mailing list, so please let me know if I've committed any
posting faux-pas.
Yes, you should probably be using the Coursera support resources instead
of this list.
Duncan Murdoch
I'm working on an assignment for my
Dear All
Thanks for the reply.
RegardsMittal
On Friday, 20 February 2015 1:56 AM, Barry Rowlingson
b.rowling...@lancaster.ac.uk wrote:
On 19 Feb 2015 20:11, Robert Baer rb...@atsu.edu wrote:
On 2/19/2015 8:06 AM, Barry Rowlingson wrote:
On Wed, Feb 18, 2015 at 11:44 AM, Mittal
Hi,
Another implication:
data1
Observation Participant.ID Video.Coder Score
1 A 1 Donald 4
2 B 1 Tracy 5
3 C 2 Donald 6
4 D 3 Sam 2
5 E
I'm trying to create a custom function to return a chart object. This
function seems to be having an error with calculating min/max/etc in the
ggplot object.
If I run the code for the ggplot not inside a custom function it works.
To reproduce this error after I need to clear the memory with
Aron Lindberg aron.lindberg at case.edu writes:
Hi Everyone,
I'm working on a thorny subsetting problem involving list of lists. I've put
a
dput of the data here:
https://gist.githubusercontent.com/aronlindberg/b916dee897d051ac5be5/
Statistical methodology questions are generally off topic here. This
list is about R programming. I suggest you post to a statistics site
like stats.stackexchange.com instead.
Cheers,
Bert
Bert Gunter
Genentech Nonclinical Biostatistics
(650) 467-7374
Data is not information. Information is not
Dear R-helpers,
I want to compute the density plot (probability plot) of the Chi-square
distribution.
My 2 categorical variables are gender (male, female) and colors of the eyes
(blue, green and brown).
The sample size n = 100. The proportions are the following :
male and blue eyes : 10%
male
Arg, just been caught !
No, just joking, it is a long time I don't have homework anymore. I keep on
giving myself homeworks life long yes this is true.
Anyways thanks for your response.
Best,
- Mail original -
De : Bert Gunter gunter.ber...@gene.com
À : varin sacha
CasasPrat,Merce [Ontario] merce.casasp...@ec.gc.ca writes:
Hi,
I'm new to R (was using Matlab previously)
Matlab has a very convenient utility that I haven't been able to find
in R. When working interactively, you can find a previous command that
starts with a certain letter by typing such
I think you might do well to consult a local statistical expert, as
you appear to be out of your statistical depth here.
Also, is this homework? If so, this is not a homework site (although
posters sometimes get help anyway).
Cheers,
Bert
Bert Gunter
Genentech Nonclinical Biostatistics
(650)
I'm using the package 'corrplot' for a figure to be used in an academic
article.
The figure must be black-and-white.
I was able to produce a figure with some shades of grey (less than fifty,
admitedly).
However, the legend is still in red color.
I need the legend be in black color.
How can I get
On Thu, Feb 19, 2015 at 1:25 AM, philippe massicotte
pmassico...@hotmail.com wrote:
Dear R users.
I would like to remove all object from my workspace except the function I
have defined. However, is I use rm(list = ls()) everything is cleared. I was
thinking to typeof to get information
Hi,
I have run across a source file for which the return value
of getParseData() includes a record having FALSE for $terminal, yet it is
not the parent of any other tokens. Before I spend time constructing a
reproducible example, I wanted to verify that this is in fact unexpected
behavior (under
On 19/02/2015 6:13 PM, Antonello Preti wrote: I'm using the package
'corrplot' for a figure to be used in an academic
article.
The figure must be black-and-white.
I was able to produce a figure with some shades of grey (less than fifty,
admitedly).
However, the legend is still in red color.
I tried to reduce the offending portion as best I could to a
more-or-less minimal example (1136 bytes), which can be downloaded via:
wget https://www.dropbox.com/s/74rgxr5x2aalr99/badstring.R
then once in R,
b - parse(file = ~/badstring.R, keep.source = TRUE)
d - getParseData(b,
On Feb 19, 2015, at 3:13 PM, Antonello Preti wrote:
I'm using the package 'corrplot' for a figure to be used in an academic
article.
The figure must be black-and-white.
I was able to produce a figure with some shades of grey (less than fifty,
admitedly).
However, the legend is still in red
On 19/02/2015 6:31 PM, B Tyner wrote:
Hi,
I have run across a source file for which the return value
of getParseData() includes a record having FALSE for $terminal, yet it is
not the parent of any other tokens. Before I spend time constructing a
reproducible example, I wanted to verify that
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