Re: [R] mnormt package for bivariate normal distribution

2020-06-17 Thread Abby Spurdle
I'm not familiar with the mnormt package. I'm guessing its documentation may answer some (if not all) of your questions. Note that my package, bivariate, wraps the dmvnorm function, from the mvtnorm package. library (bivariate) f <- nbvpdf ( 0, 0, #means X, Y 1, 1, #sds X, Y 0.5)

Re: [R] Help guidelines to install packages and tools of R Studio

2020-06-17 Thread Jeff Newmiller
It is not a good idea to locate the default user library in a OneDrive or other network-backed software like it (Dropbox, etc.). Nor should you work on R files directly in such a directory. The network backup interferes with R and various common support tools used with R. If you delete the

Re: [R] Help guidelines to install packages and tools of R Studio

2020-06-17 Thread David Winsemius
On 6/17/20 1:06 PM, mrita.goncal...@gmail.com wrote: > Dear Sirs, > > I have installed Rstudio 4.0 version to start using and learn R language. > > > > I am not able to install the learnr package or create the library directory. > > > > Also appears that message.of error in

Re: [R] R 4.0.1/R-devel 2020-06-16-r78702 built with Intel Composer 19.1.1, error in R CMD make check on CentOS 7.7

2020-06-17 Thread Jeff Newmiller
Read the Posting Guide ... this is definitely off-topic here. I think this is an r-devel question, though I really don't know whether you will find interest in discussing compilation of R with a non-standard tool chain. There are a lot of "moving parts" in R and it can be challenging just to

Re: [R] R 4.0.1/R-devel 2020-06-16-r78702 built with Intel Composer 19.1.1, error in R CMD make check on CentOS 7.7

2020-06-17 Thread Ryan Novosielski
Same story with R-devel 2020-06-16-r78702, everything else the same. Should I be reporting this someplace else? -- || \\UTGERS, |---*O*--- ||_// the State | Ryan Novosielski - novos...@rutgers.edu || \\ University | Sr.

[R] Help guidelines to install packages and tools of R Studio

2020-06-17 Thread mrita.goncalves
Dear Sirs, I have installed Rstudio 4.0 version to start using and learn R language. I am not able to install the learnr package or create the library directory. Also appears that message.of error in Portuguese(Brazil) Warning in install.packages : n�o foi poss�vel criar o diret�rio

Re: [R] Installation of mclust package v5.4.6 on R v4.0.1 on Ubuntu v20.04 hangs

2020-06-17 Thread Bert Gunter
I would think that it is how interacts with the OS on Ubuntu, which is what the SIG is about and where also relevant expertise is likely to be found. But I claim no such expertise and you are certainly free to reject my suggestion as useless. Bert Gunter "The trouble with having an open mind is

Re: [R] Installation of mclust package v5.4.6 on R v4.0.1 on Ubuntu v20.04 hangs

2020-06-17 Thread Venkatesh Prasad Ranganath
Hey Jeff, Thanks for confirming the package could be built and installed on Ubuntu 18.04. I will pose the question to the SIG. Cheers, Venkatesh-Prasad Ranganath http://rvprasad.com On Wed, Jun 17, 2020 at 3:39 PM Jeff Newmiller wrote: > Please (re)read the Posting guide, which says that

Re: [R] Installation of mclust package v5.4.6 on R v4.0.1 on Ubuntu v20.04 hangs

2020-06-17 Thread Jeff Newmiller
Please (re)read the Posting guide, which says that this mailing list is for questions about the R language and not about compiling issues, and then go to r-sig-debian to look for more expertise. FYI I don't have Ubuntu 20.04, but I had no trouble installing mclust 5.4.6 with R4.0.1 on Ubuntu

Re: [R] comparing variances/distributions

2020-06-17 Thread Ana Marija
would using Kolmogorov-Smirnov test make more sense here? > x=m$Pold > y=m$Pnew > ks.test(x,y) Two-sample Kolmogorov-Smirnov test data: x and y D = 0.0049066, p-value = 1.221e-15 alternative hypothesis: two-sided Warning message: In ks.test(x, y) : p-value will be approximate in the

[R] comparing variances/distributions

2020-06-17 Thread Ana Marija
Hello, I have p values from two distributions, Pold and Pnew > head(m) CHR POS MARKER Pnew Pold 1: 1 785989 rs2980300 0.1419 0.9521 2: 1 1130727 rs10907175 0.1022 0.4750 3: 1 1156131 rs2887286 0.3698 0.5289 4: 1 1158631 rs6603781 0.1929 0.2554 5: 1 1211292 rs6685064

Re: [R] Installation of mclust package v5.4.6 on R v4.0.1 on Ubuntu v20.04 hangs

2020-06-17 Thread Venkatesh Prasad Ranganath
Hey Bert, Since the process stalls during byte-compilation and package preparation, I am thinking the issue is likely due to R and not the Ubuntu platform. If you think otherwise, then can you please say you think so? Also, is there a way to trace/debug the package build process? The same

Re: [R] Installation of mclust package v5.4.6 on R v4.0.1 on Ubuntu v20.04 hangs

2020-06-17 Thread Bert Gunter
Probably better posted on R-sig-debian. Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Wed, Jun 17, 2020 at 11:33 AM Venkatesh Prasad Ranganath <

[R] Installation of mclust package v5.4.6 on R v4.0.1 on Ubuntu v20.04 hangs

2020-06-17 Thread Venkatesh Prasad Ranganath
Hey All, When I execute 'Rscript -e "install.packages('mclust')"` with R 4.0.1 on Ubuntu 20.04, the process hangs during package preparation. Any idea how to fix or debug this issue? Venkatesh-Prasad Ranganath - ENV: R v4.0.1, GCC v9, Ubuntu v20.04 CMD:

Re: [R] Rmarkdown flexdashboard

2020-06-17 Thread David Winsemius
On 6/17/20 12:37 AM, giulio verdi wrote: Hello to everyone, How can I change the color of the tickets on the dashboards from blue to grey when you hover your mouse over it. An example: [image: image] I need to change the color form blue to grey. Thanks in advance. Marco [[alternative

[R] mnormt package for bivariate normal distribution

2020-06-17 Thread Vahid Borji
Hi, my R friends, I am going to plot the surface of a bivariate normal distribution and its contours. I have written the below codes: library(MASS) set.seed(69) n <- 5000 x <- rnorm(n, 0, 15) y <- 0.5 * x + rnorm(n, 0, 10) z <- kde2d(x, y, n = 50) persp(z, theta = 55, phi = 35, shade =

[R] Rmarkdown flexdashboard

2020-06-17 Thread giulio verdi
Hello to everyone, How can I change the color of the tickets on the dashboards from blue to grey when you hover your mouse over it. An example: [image: image] I need to change the color form blue to grey. Thanks in advance. Marco [[alternative HTML version deleted]]

[R] smoothScatter() and the KernSmooth package

2020-06-17 Thread Witold E Wolski
Hello, I am getting the following error when running a package check ``` Error in loadNamespace(name) : there is no package called 'KernSmooth' Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted ``` The error happens in a function which calls