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R-help@r
, jim holtman wrote:
I am still not sure what you expect as output. Can you provide an
example of what you think that you need. What is it that you are
trying to construct? How do you then plan to use them? There might
be other ways of going about it if we knew what the intent was -- what
[EMAIL PROTECTED] wrote:
Thanks for the response!
I want to create those lists so that I could use them in a function
('contrast' in contrast package) as arguments.
Any suggestions?
Thanks,
Gang
On Nov 8, 2007, at 5:12 PM, jim holtman wrote:
Can you tell us what you want to do
code.
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with
the rest of columns. However, I need all rows for the
two parts.
The file is in txt format and around 480Mb, very large though.
Yes, it is of numeric values.
I appreciate!
Allen
On Nov 9, 2007 11:46 PM, jim holtman [EMAIL PROTECTED] wrote:
If they are all numeric, you can use
of the header and row.names to use scan()?
Thanks!
Allen
On Nov 10, 2007 12:18 AM, jim holtman [EMAIL PROTECTED] wrote:
Here is an example of reading in file of 3M numbers (11MB of text
file) on my laptop:
system.time(x - scan('/tempyy', what=0))
Read 300 items
user system elapsed
, skip, nlines, na.strings, :
scan() expected 'a real', got 'B'
Let me try what you suggested.
Thanks!
Allen
On Nov 10, 2007 12:07 AM, jim holtman [EMAIL PROTECTED] wrote:
If they are all numeric, then read it in with:
x - scan('yourfile', what=0) # assuming blank separators
), x, y)
z
b1 b2 b3
2.00 3.33 4.00
Allen
On Nov 11, 2007 10:41 PM, jim holtman [EMAIL PROTECTED] wrote:
What did your text files look like? It would appear that there was
not a line feed on the last line of the file. Also what does 'str' of
x and y show
]]
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Was supposed to be:
B - A[,1:47] / myAvg
On Nov 12, 2007 3:10 PM, jim holtman [EMAIL PROTECTED] wrote:
Try something like this:
myAvg - rowMeans(A[,48:243])
B - A[1:47,] / myAvg
On Nov 12, 2007 1:37 PM, affy snp [EMAIL PROTECTED] wrote:
Dear list,
Hi! I have a table A, 238304 rows
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. some other languages.
HTH
On Nov 13, 2007 4:44 PM, Martin Waller [EMAIL PROTECTED] wrote:
jim holtman wrote:
Here is one way of doing it that uses the row and column names:
# create test data
mat1 - matrix(0, nrow=10, ncol=3)
dimnames(mat1) - list(paste('row', 1:10, sep=''), LETTERS[1:3
!!!
/David
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What is the problem you are trying to solve
] On
Behalf Of jim holtman
Sent: Wednesday, November 14, 2007 8:39 AM
To: affy snp
Cc: r-help@r-project.org
Subject: Re: [R] How to get row numbers of a subset of rows
Here is a way of doing it using 'rle':
x - read.table(textConnection( SNPChromosome
PhysicalPosition
+ 1 SNP_A
code.
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of the material to show
how other organizations are using R in this context.
Please feel free to contact me with any questions or comments.
Jim Holtman
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What
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What is the problem you
(data2_1, na.rm = TRUE)
num - apply(data2_1, 2, function(x) {
sum(x (thr), na.rm = TRUE)
})
On 2/6/08, jim holtman [EMAIL PROTECTED] wrote:
The error message was coming from the call to colMeans where 'x' was
not a matrix; it was a vector that resulted from the 'apply' call.
Did you
appreciated.
Joseph
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guide http://www.R-project.org/posting-guide.html
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at Nabble.com.
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read the posting guide http://www.R-project.org/posting-guide.html
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Feb 2008, at 16:49, jim holtman wrote:
Here is a start. You basically have to interate through your data and
use 'cat' to write it out:
particle - list(dose=c(1,100.0,0),pos=data.frame(x=c(0,1,0,1),y=c
(0,1,0,1)))
output - file(/tempxx.txt, w)
cat(particle$dose, \n, file=output, sep
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)
But the data points of the line is plotted at the beggining of each category
on x axis. I want to them plotted at the middle of each category.
Can you help?
Xin
- Original Message -
From: jim holtman [EMAIL PROTECTED]
To: Xin [EMAIL PROTECTED]
Sent: Saturday, February 16, 2008 11:43 AM
.
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Felipe D. Carrillo
Fishery Biologist
US Fish Wildlife Service
California, USA
Never miss
] gmail.com
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What is the problem you are trying to solve
Bioinformatics
Center for Applied Medicine (CIMA)
University of
Navarra
Avda. Pio XII, 55
E-31008 Pamplona, Spain
Tel: +34 948 194700, ext
5023
email: [EMAIL PROTECTED]
jim holtman escribió:
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?assign
On 2/21/08, Paul Hammer [EMAIL PROTECTED] wrote:
Paul Hammer schrieb:
jim holtman schrieb:
Exactly what do you mean by additional text? Have you tried paste?
On 2/21/08, Paul Hammer [EMAIL PROTECTED] wrote:
dear members,
i would like to write a variable in a plot title
code.
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Also consider using a 'list' to store the results.
On 2/21/08, Paul Hammer [EMAIL PROTECTED] wrote:
Paul Hammer schrieb:
jim holtman schrieb:
Exactly what do you mean by additional text? Have you tried paste?
On 2/21/08, Paul Hammer [EMAIL PROTECTED] wrote:
dear members,
i would
code.
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What is the problem you are trying to solve?
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One way of finding out is to look at the code for cut.default. Here
is the result of tracing through it where it determines where the cuts
are for 12 equal spacings:
D(2)
[1] 149.804 166.170 182.536 198.902 215.268 231.634 248.000 264.366
280.732 297.098 313.464 329.830
[13] 346.196
As you can
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What
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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What is the problem you are trying to solve? Tell me what you want to
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Jim Holtman
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Jim Holtman
Cincinnati, OH
+1 513 646 9390
What is the problem you are trying to solve? Tell me what
__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Jim Holtman
Cincinnati
-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Jim Holtman
Cincinnati, OH
+1 513 646 9390
What is the problem you are trying to solve? Tell me what you want to
do, not how you want to do it.
__
R-help@r-project.org
/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Jim Holtman
Cincinnati, OH
+1 513 646 9390
What is the problem you are trying to solve? Tell me what you want to
do, not how
.
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R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Jim Holtman
Cincinnati, OH
+1 513 646 9390
What
pallate
is added on the right side of this plot describing the value of red
color, value of blue color etc.
Is there any solution?
Regards,
jim holtman [EMAIL PROTECTED] wrote:
Try something like this:
require(grDevices) # for colours
x - y - seq(-4*pi, 4*pi
://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Jim Holtman
Cincinnati, OH
+1 513 646 9390
What is the problem you are trying to solve?
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https
, reproducible code.
--
Jim Holtman
Cincinnati, OH
+1 513 646 9390
What is the problem you are trying to solve?
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting
-contained, reproducible code.
--
Jim Holtman
Cincinnati, OH
+1 513 646 9390
What is the problem you are trying to solve?
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R
-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Jim Holtman
Cincinnati, OH
+1 513 646 9390
What is the problem you are trying
://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Jim Holtman
Cincinnati, OH
+1 513 646 9390
What is the problem you are trying to solve
. The format of data I would like to store would be data frames or
matrices. I also would like to store the data for later use, e.g., a plot of
the empirical distribution of the chi^2, or to compute the power of Chi^2
across 1000 reps for each condition.
On Mon, Mar 3, 2008 at 7:03 PM, jim holtman
-contained, reproducible code.
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Jim Holtman
Cincinnati, OH
+1 513 646 9390
What is the problem you are trying to solve?
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