Hello R
I have some data from a number of gels showing the distance of bands in
each gel and lane. My problem is to align these values by some method.
It has been suggested to me (by a Matlab expert) that I could use
Spectral methods such as COW (correlation-optimised warping) or PAGA
(peak
Hi Ingo
Your code worked for me and I did not lose the title. Not much help I
know but my session details are below to compare. Windows XP ...
Regards
JS
sessionInfo()
R version 2.6.0 (2007-10-03)
i386-pc-mingw32
locale:
LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United
Hi All
I have looked but cannot find an answer to this.
I want to build a formula dynamically (in a function), using for example
paste, and using it in a model:
fr-F1
f1-formula(paste(fr, ~ SensoryTerm))
m1-aov(f1, data=vdata)
So this is the equivalent of
February 2008 09:57
To: [EMAIL PROTECTED]; john seers (IFR); [EMAIL PROTECTED]
Subject: RE: [R] Building a formula using paste
Please disregard my previous reply. Now that I have read your question,
all becomes clear.
To do what you want to do is a bit tricky. Here is one way
f1 - as.name(F1)
fm
Thanks for the help.
Regards
John Seers
---
-Original Message-
From: Peter Dalgaard [mailto:[EMAIL PROTECTED]
Sent: 01 February 2008 10:04
To: [EMAIL PROTECTED]
Cc: john seers (IFR); [EMAIL PROTECTED]
Subject: Re: [R] Building a formula using paste
[EMAIL PROTECTED] wrote:
use
Hi
I think this is a good suggestion.
And I would like to add the associated problem of deciding between
packages that do the same function which one is better. Or similarly
packages are often superceded. I find I have to spend a lot of time
learning how to use packages to decide which one
Hello All
Using lapply and ending up with lists of lists I often end up in the
position of not having the names of the list passed by lapply. So, if I
am doing something like a plot, and I would like the title to reflect
which plot it is, I cannot easily do it. So I find myself doing some
Hi KB
I am not sure exactly what you want to do but perhaps this is this
closer to what you need:
addition-function(X, a){Xnew-X + a}
X-array(1,dim=c(2,2))
a-2
Xa-addition(X,a)
Xa
Regards
JS
---
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
On Behalf Of
to plot the
data (or whatever) and be able to slap a label on it so I can keep track
of what I am doing.
Regards
John Seers
-Original Message-
From: Gabor Grothendieck [mailto:[EMAIL PROTECTED]
Sent: 05 February 2008 16:17
To: john seers (IFR)
Cc: R Help
Subject: Re: [R] Using lapply
OK, that looks a good suggestion. Though it is a bit of a step towards loops
and counting ...
Thanks a lot.
Regards
JS
-Original Message-
From: Gabor Grothendieck [mailto:[EMAIL PROTECTED]
Sent: Tue 2/5/2008 4:51 PM
To: john seers (IFR)
Cc: R Help
Subject: Re: [R] Using lapply
Hi Corinna
The p.adjusted value is the the p-value adjusted for Multiple
Comparisons.
Enter ?p.adjust to get more of an explanation.
Regards
JS
---
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
On Behalf Of Schmitt, Corinna
Sent: 11 February 2008 16:02
To:
Thank you very much for your help - that fixed it. Sorry I did not see
it in the manual.
Regards
JS
---
-Original Message-
From: Prof Brian Ripley [mailto:[EMAIL PROTECTED]
Sent: 19 February 2008 14:14
To: john seers (IFR)
Cc: r-help@r-project.org
Subject: Re: [R] Building
Hi
A simple example of a linear model:
x-1:10
y-3*x+1
m1-lm(y~x)
y
# [1] 4 7 10 13 16 19 22 25 28 31
fitted(m1)
# 1 2 3 4 5 6 7 8 9 10
# 4 7 10 13 16 19 22 25 28 31
The fitted and calculated values look identical to me.
Can you give an example of how your calculated values
Hi Chib
whether there is a way of handling the error you get in the
download.file() function
I think the function try will do this for you. That is, handle the
error.
Have a look at ?try.
Regards
John Seers
---
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
Hi
qqline does not do the plot. It adds a line to an existing plot.
So you have to do something else first, like:
qqnorm(x)
qqline(x)
JS
---
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
On Behalf Of Scotty Nelson
Sent: 05 August 2008 09:58
To:
There is also the trim command in the gdata package. Removes blanks
from the front of the string as well which may not be what you want.
Regards
JS
---
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
On Behalf Of jim holtman
Sent: 27 June 2008 10:27
To: juli
Hi
Are all your input p values the same? If so your output FDR values would
be the same.
Or are all your p-values relatively large? Then (nearly) all your FDR
values might be 1.
Why don't you put a small example up of what you did? Then we could see
what method you used etc.
Regards
JS
Message-
From: A Ezhil [mailto:[EMAIL PROTECTED]
Sent: 10 July 2008 16:23
To: r-help@r-project.org; john seers (IFR)
Subject: RE: [R] false discovery rate !
Dear John,
My P values are not same and the smallest P value = 0.0002. My P value
distribution is not that great (see the attached file
Hi Fabio
Works OK for me.
par(mfrow=c(2,2))
par(mfrow)
[1] 2 2
But then I am using Windows ...
sessionInfo()
R version 2.7.1 (2008-06-23)
i386-pc-mingw32
locale:
LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United
Kingdom.1252;LC_MONETARY=English_United
Hi Fabio
Have you used the name c for something else? Try typing in c at the
command line, you should see something like:
c
function (..., recursive = FALSE) .Primitive(c)
Regards
John
---
for example;
par(mfrow=c(2,2))
Error in c(2, 2) : unused argument(s) (2)
par$mfrow
NULL
This is definitely the best way:
c(lapply(1:length(x), function(i, x, y) c(x[i], y[i]), x, y),
recursive=TRUE)
JS
---
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
On Behalf Of Shubha Vishwanath Karanth
Sent: 23 July 2008 13:55
To: [EMAIL PROTECTED]
Q1:
Have a look at:
?save
?save.image
?load
Q2:
I am not sure this is right:
model-lm(data$admissions~data$maxitemp)
Try and code a line that looks more like this with the variables the
names of the columns in your data:
model-lm(admissions ~ maxitemp + minitemp, data=data)
Have a read
Is this what you want:
paste(Mystring, frequency, sep=)
---
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
On Behalf Of Alfredo Alessandrini
Sent: 31 July 2008 10:11
To: r-help@r-project.org
Subject: [R] add string
Hi,
How can I join two string?
frequency =
Hello All
I am trying to get the JRI examples from rJava to work on Windows XP and
failing. (And as a more general and connected question is there any
review/summary of front-end software for R?)
I have installed rJava from the Windows binary supplied. I compile and
run the example supplied
Hello
Trying to run R in a non-existent locale (or at least in a charset
iconv() does not understand).
However, your example (with suitably modified paths) does work for me
in apparently the same locale, so I cannot debug it for you.
Thank you for trying. I do not understand the
Try:
mat - mat[order(rownames(mat)), ]
---
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
On Behalf Of Paul Geeleher
Sent: 19 May 2008 12:07
To: r-help@r-project.org
Subject: [R] Sort matrix with duplicate row names alphabetically by
rowname
Hi,
I've a
Something like this may be close to what you want:
subset(input, field1==blah1 !is.na(charmatch(blah3,input$field3)))
---
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
On Behalf Of Albert Vilella
Sent: 29 May 2008 11:38
To: r-help@r-project.org
Subject: [R]
Ah, that is neat.
Thanks.
JS
-Original Message-
From: Gabor Grothendieck [mailto:[EMAIL PROTECTED]
Sent: 16 November 2007 15:12
To: john seers (IFR)
Cc: r-help@r-project.org
Subject: Re: [R] Scaling a column in groups
Try this:
c(apply(matrix(testdata, 25), 2, scale))
On Nov 16
Hello
Works fine for me:
data
-scan(file='http://en.wikipedia.org/wiki/Special:Recentchanges',what='c
haracter')
Read 3581 items
So I don't think it is the Wikipedia end.
Regards
John Seers
---
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
On Behalf
Hi
I am running under Windows XP using R2.6.1.
I pasted your code in my Rprofile.site in the etc directory and it
worked for me.
All I can suugest is:
1. Check you really put it in the etc directory. (Do you have an old
version of R somewhere ...?)
2. Is it really called Rprofile.site. (Not
Hi
Are you sure this is an R problem? The Choose dialog can be very slow
if you have networked directories that cannot be connected to. Windows
tries to connect repeatedly and each time waits for a timeout. Suggest
you check your mapped network drives.
Regards
JS
---
Dear R users
since
Hi All
How can you associate names with a list when names have not been
assigned? For example if you have a list like this:
list2-list(1,2,3)
list2
[[1]]
[1] 1
[[2]]
[1] 2
[[3]]
[1] 3
How do you make it look like this with names? :
f1-1
f2-2
f3-3
list1-list(name1=f1, name2=f2, name3=f3)
Dallazuanna [mailto:www...@gmail.com]
Sent: 19 January 2009 12:30
To: john seers (IFR)
Cc: r-help@r-project.org
Subject: Re: [R] How to assign names in a list
If I understand correctly:
names(list2) - paste(name, 1:3, sep = )
On Mon, Jan 19, 2009 at 10:23 AM, john seers (IFR) john.se...@bbsrc.ac.uk
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