[R] Windows: URL associations do not work in scheduled tasks

Hi, I have a script called test.R which contains: browseURL(http://r-project.org;) It works fine when I run it interactively or with R -f test.R when logged in as the user 'biocbuild'. However, if I set up a Scheduled Task to run the script as that same user (with the XML definition below)

[R] install.packages umask configuration

Hi, The R-admin manual says: If installing packages on a Unix-alike to be used by other users, ensure that the system umask is set to give sufficient permissions (see also Sys.umask in R). (To a large extent this is unnecessary in recent versions of R, which install packages as if umask = 022.)

Re: [R] install multtest and preprocessCore packages in Bioconductor library

Hi Nguyen, Subject: [R] install multtest and preprocessCore packages in Bioconductor library Date: Wed, 30 Nov 2011 09:57:36 -0800 From: UyenThao Nguyen ungu...@tethysbio.com To: r-help r-help@r-project.org CC: uth.ngu...@ucdavis.edu uth.ngu...@ucdavis.edu Hi All, I've tried to install

Re: [R] install multtest and preprocessCore packages in Bioconductor library

list, after reading our posting guide. http://bioconductor.org/help/mailing-list/posting-guide/ Thanks, Dan Thanks again, Nguyen On Nov 30, 2011, at 10:09 AM, Dan Tenenbaum wrote: Hi Nguyen, Subject: [R] install multtest and preprocessCore packages in Bioconductor library Date

Re: [R] [BioC] arch=i386

On Wed, Apr 27, 2011 at 4:46 AM, Stat Consult statconsul...@gmail.com wrote: Dear ALL I want to load HTSanalyzeR, It 's necessary to load igraph package. This time I see this error: library(igraph)  library(HTSanalyzeR) Loading required package: GSEABase Loading required package: Biobase

Re: [R] Sending a null byte to a socket

Sorry to spam the list again, but I was wondering if anyone has a solution to this. It seems that writing nulls to sockets is a pretty common use case, so I would hope there is a way to do this. Thanks. On Wed, Jun 16, 2010 at 12:52 PM, Dan Tenenbaum dtenenb...@systemsbiology.org wrote: Hello

Re: [R] Sending a null byte to a socket

OK, I figured this out: s - CONNECT\n\n con - socketConnection(port=61613, blocking=F) writeChar(s, con, nchar(s)) r = readLines(con) r [1] CONNECTED session:ID:yourhost.yourdomain.com-49763-1276709732624-4:28 [4] close(con) Thanks Dan On Wed, Jun 16, 2010 at 12:52 PM, Dan Tenenbaum

[R] Sending a null byte to a socket

Hello, I am trying to write some code in R to communicate over sockets via the STOMP protocol (http://stomp.codehaus.org/Protocol). As you can see, a null byte (ASCII 0) is used as the over signal. I'd like to be able to do something like this: write.socket(socket, CONNECT\nlogin:

[R] .Rprofile is being executed twice

Hi, After updating to R 2.7, my .Rprofile executes twice on startup. I confirmed this by putting in the following line: print(starting .Rprofile...) When I start R, I see: [1] starting .Rprofile... [1] starting .Rprofile... This seems like the obverse of the following FAQ: