e this helps,
>
> Rui Barradas
>
> Às 05:58 de 13/09/2022, Neha gupta escreveu:
> > Hi
> >
> > There is a gap between plots (white spaces) when I draw the boxplot. I
> want
> > to reduce the spaces between the plots so that the boxplot takes a small
> >
Hi
There is a gap between plots (white spaces) when I draw the boxplot. I want
to reduce the spaces between the plots so that the boxplot takes a small
space. When I just adjust "boxwex" values, the length of individual plots
increases/decreases but the white spaces is still there.
My code:
RF=
Hello everyone
I am using nested resampling in caret (5-fold outer and bootstrap inner
resampling) and by default, it shows the "Accuracy" metric. How can I use
it for the ROC/AUC metric?
My code is:
d=readARFF("apns.arff")
index <- createDataPartition(d$isKilled , p = .70,list = FALSE)
tr <-
T"),main="Degree of
> consistency
> with default and optimized settings")
>
> Modify to your taste.
>
> Cheers,
> Bert
>
> On Sun, Jul 17, 2022 at 12:06 PM Neha gupta
> wrote:
> >
> > Hi
> >
> > I have the following code to dis
218.9856 0.9141754 152.2099
> #24extratrees 7 222.8540 0.9412682 152.4614
> #24extratrees 8 228.1156 0.9423414 161.8456
> #24extratrees 9 226.6182 0.9408306 160.5264
> #24extratrees 10 226.92
I posted it for the second time as I didn't get any response from group
members. I am not sure if some problem is with the question.
I cannot run the "ranger" model with caret. I am only using the farff and
caret libraries and the following code:
boot <- trainControl(method = "cv", number=10)
Okay, thank you. I will do that.
Best regards
On Sunday, June 19, 2022, Rui Barradas wrote:
> Hello,
>
> No, do not delete RStudio, just donwload and install the most up-to-date
> version.
>
> Hope this helps,
>
> Rui Barradas
>
> Às 16:27 de 19/06/2022, Neha
; On Sun, Jun 19, 2022 at 7:54 AM Neha gupta
> wrote:
>
>> Recently I updated R and now when I try to open R studio, I get
>>
>> The R session failed to start.
>>
>> ERROR MESSAGE
>> [No error available]
>> PROCESS OUTPUT
>> The R sess
Recently I updated R and now when I try to open R studio, I get
The R session failed to start.
ERROR MESSAGE
[No error available]
PROCESS OUTPUT
The R session process exited with code -1073740791.
ERRORS
[No errors emitted]
OUTPUT
[No output emitted]
22 Nov 2020 18:35:26 [rsession-] ERROR
, range = 0, col=colors, names= c("RF",
> "RF_LOO", "RF_boot",
> "Ranger", "Ranger_LOO", "Ranger_boot", "SVM", "SVM_LOO",
> "SVM_boot",
> "KNN", "KNN_LOO",
I have the following data and I need to use a boxplot which displays the
variables (RF, Ranger, SVM, KNN) with one color, variables (RF_boot,
Ranger_boot, SVM_boot, KNN_boot) with another color and the variables
(RF_LOO, SVM_LOO, Ranger_LOO, KNN_LOO) with another color.
How can I do that?
ting function, then it should be
> as simple as
>
>
> newdata75 <- data.frame(x = 75)
> y75 <- predict(fit, newdata = newdata75)
>
>
> or something similar.
>
> I have never used this package so I might be completely wrong.
>
> Hope this helps,
>
> Rui Barradas
&
uot;prob")
> #> Error: Element with key 'classif.randomForest' not found in
> DictionaryLearner!
>
> Rui Barradas
>
> Às 14:12 de 20/05/2022, Neha gupta escreveu:
>
>> When I run
>>
>> print(fc)
>>
>> it shows 'Inf'. It mean it doesn't calculat
questions.
>
>
> ifelse(test$CE == '2', 1, 0)
>
>
> is equivalent to the much more performant
>
>
> as.integer(test$CE == '2') # or as.numeric
>
>
> If the code still runs with errors, then those errors came from elsewhere.
>
> Hope this helps,
>
> Rui Barradas
Why do I get the following error when my variable in the 'if statement' has
no missing values.
I check with is.na(my variable) and it has no missing values
Error in if (fraction <= 1) { : missing value where TRUE/FALSE needed
Best regards
[[alternative HTML version deleted]]
15 142
2
DESCRIPTION_FORMATTYPE
2 3
On Thu, Apr 14, 2022 at 2:30 AM David Winsemius
wrote:
>
> On 4/13/22 16:58, Neha gupta wrote:
>
> summary(d)
>
>
On Behalf Of Jeff Newmiller
> Sent: Monday, March 21, 2022 8:41 PM
> To: r-help@r-project.org; Neha gupta ; r-help
> mailing list
> Subject: Re: [R] How important is set.seed
>
> [External Email]
>
> First off, "ML models" do not all use random numbers (for pr
Hello everyone
I want to know
(1) In which cases, we need to use set.seed while building ML models?
(2) Which is the exact location we need to put the set.seed function i.e.
when we split data into train/test sets, or just before we train a model?
Thank you
[[alternative HTML version
> actually testing. Maybe that phrase will help you in _your_ search for
> the answer.
>
> Jim
>
> On Tue, Mar 1, 2022 at 8:56 AM Neha gupta
> wrote:
> >
> > Hello everyone,
> >
> > I have 'mean absolute error' values from different folds of CV of 6
4 5 7 ## bug count
> 162 40 9 7 2 1 1 ## nmbr of cases with the given count
>
> You or others may disagree, of course.
>
> Bert Gunter
>
>
>
> On Thu, Feb 17, 2022 at 11:56 AM Neha gupta
> wrote:
> >
> > Ebert and Rui, thank you fo
gt;
>
>
> This can be copied into an R session and the data set recreated with
>
> data <- structure(etc)
>
>
> Now the boxplots.
>
> (Why would you want to plot a vector of all zeros, btw?)
>
>
>
> library(dplyr)
>
> boxplot(filter(data, bug == 0
2-02-17 1:54 p.m., Neha gupta wrote:
> > Hello everyone
> >
> > I have a dataset with output variable "bug" having the following values
> (at
> > the bottom of this email). My advisor asked me to provide data
> distribution
> > of bugs with 0 values an
-
> From: R-help On Behalf Of Neha gupta
> Sent: Thursday, February 17, 2022 1:55 PM
> To: r-help mailing list
> Subject: [R] Problem with data distribution
>
> [External Email]
>
> Hello everyone
>
> I have a dataset with output variable "bug" having t
ch returns NaN. So 1/0 <= 1 returns FALSE and 0/0 <= 1 returns NA. A
> great deal of the behavior of your program hinges on what "fraction" is in
> your program.
>
> Tim
>
> -Original Message-
> From: R-help On Behalf Of Neha gupta
> Sent: Friday, Jan
PM Jim Lemon wrote:
>>
>> > Hi Neha,
>> > You're using the argument "na.omit" in what function? My blind guess
>> > is that there's a divide by zero shooting you from behind.
>> >
>> > Jim
>> >
>> > On Sat, Jan 15
at there's a divide by zero shooting you from behind.
>
> Jim
>
> On Sat, Jan 15, 2022 at 6:32 AM Neha gupta
> wrote:
> >
> > Hi everyone
> >
> > I use na.omit to remove NAs but still it gives me error
> >
> > Error in if (fraction <= 1) { : mis
Hi everyone
I use na.omit to remove NAs but still it gives me error
Error in if (fraction <= 1) { : missing value where TRUE/FALSE needed
My data is:
data.frame': 340 obs. of 15 variables:
$ DepthTree: num 1 1 1 1 1 1 1 1 1 1 ...
$ NumSubclass : num 0 0 0 0 0 0 0 0 0 0 ...
$ McCabe
oxplot.
>
> Hope this helps,
>
> Rui Barradas
>
> Às 14:51 de 04/08/21, Neha gupta escreveu:
> > Hi
> >
> > I have values like:
> >
> > var= c(0, 0, 0,0, 0, 14, 0, 14, 0, 2, 3)
> >
> > I want to show these values in a boxplot
> >
&g
Hi
I have values like:
var= c(0, 0, 0,0, 0, 14, 0, 14, 0, 2, 3)
I want to show these values in a boxplot
boxplot (var)
However, the boxplot shows only the zero values and the value till 14 are
shown as outliers.. I want to show all my values as boxplot, can I do that?
If I use outline=F, it
Thanks a lot Sir, indeed it resolved my issue.
Warm regards
On Sat, Jul 24, 2021 at 1:51 PM Rui Barradas wrote:
> Hello,
>
> Simply by also passing a vector to the extraction function:
>
>
> rows= df[c(1,2,5,7,12) , ]
>
>
> Hope this helps,
>
> Rui Barradas
>
Hi
If I have to select specific rows and all columns of a dataframe, I use:
rows= df[1:12 , ]
However, how to select rows if our required rows are not in sequence i.e.
if we need to select row numbers 1,2,5,7, and 12..
Warm regards
[[alternative HTML version deleted]]
Hello everyone
While I am working to identify the correlated metrics on my data, I am
getting the following error? My data has no missing or Inf values as all
other operations (model training etc) could be done without any errors.
Error in hclust(as.dist(1 - abs(cor(data, method = cor_method))),
Thank you all.. I installed vctrs and install_dependencies and now its
working
Regards
On Sat, Apr 17, 2021 at 9:52 PM Neha gupta wrote:
> Thank you. I have installed "rlang" but now giving error message below:
>
> Error: package or namespace load failed for ‘farff’ in l
21 at 9:35 PM Rui Barradas wrote:
> Hello,
>
> That error message means you need to run
>
> install.packages("rlang")
>
> before running
>
> library(farff)
>
>
> Hope this helps,
>
> Rui Barradas
>
> Às 20:02 de 17/04/21, Neha gupta escre
Hi, suddenly the packages I installed not working. It gives me the error:
Error: package or namespace load failed for ‘farff’ in loadNamespace(i,
c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
namespace ‘rlang’ 0.4.7 is already loaded, but >= 0.4.10 is required
[[alternative HTML
Hi
I have two files of my data: part1 and part2. I used part1 to train and
test my data and got the RMSE value. Now I need to compare my obtained
result (RMSE value) with unseen data i.e. part2 of data. How can I use the
same training data of part1 and part2 data as test data.
I am using caret
Hi to everyone
I just wanted to know if the dalex package of the mlr3 provides the same
functions (i.e. variable importance) as provided by the scott-knott-esd
test?
Warm regards
[[alternative HTML version deleted]]
__
R-help@r-project.org
Hi, If I am using caret and MAE metric, how can we get median of MAE in
easy manner.
cart <-train(Result ~ ., data = tr,
method = "rf",
metric = "MAE",
preProc = c("center", "scale", "nzv"),
trControl = ctr)
[[alternative HTML version deleted]]
Hi, I am using caret package and using nested resampling method (i.e. 5
fold for outer fold). I am getting the RMSE and MAE values, which are
default to the caret library.
My question is how can we implement the Mean Magnitude of Relative Error
(MRE and MMRE) with caret. My code is the following:
Hello everyone
I m using the parameters optimization of svm in mlr3. I am setting the
parameters of 'C' and 'type'.
search_space = paradox::ParamSet$new(
params = list(paradox::ParamInt$new("C", lower = 1, upper = 7),
paradox::ParamFct$new(id = "type", default = "eps-svr",
levels =
Hi, I am using the hyperparameters tuning of GBM but it gives me the
following error: (For some other datasets, my code works, so the problem
would be the dataset size I guess).
Error in gbm.fit(x = x, y = y, offset = offset, distribution =
distribution, :
The data set is too small or the
' is not set at all. Try setting 'type' to a value
that satisfies the condition.
I have set the parameter values as following:
search_space = paradox::ParamSet$new(
params = list(paradox::ParamInt$new("C", lower = 1, upper = 7)))
On Tue, Dec 29, 2020 at 6:36 PM Neha gupta wrote:
ast 1, so searching
> below 1 is probably your issue.
>
> Also, logically, zero nearest neighbors doesn't seem to make a lot of
> sense.
>
> Pat
>
> On Tue, Dec 29, 2020 at 11:01 AM Neha gupta
> wrote:
>
>> Thank you for your response.
>>
>> Are yo
Thank you for your response.
Are you certain that k = 0 is a legitimate setting?
Since, the default value of k is 1, I wanted to search between the values
of 0 to 3.
Milne, Do you mean I have to provide both the lower and upper bounds
greater than 1 in order to get rid of this error?
On Tue,
I am using mlr3 'fast nearest neighbor' leaner i.e. fnn
Its parameter is 'k' which has a default value of 1. When I use tuning
using random search, I set the parameter of k as: lower= 0, upper=3
But it gives an error message
Error in self$assert(xs) :
Assertion on 'xs' failed: k: Element 1 is
I am using nlr3 'fast nearest neighbor' leaner i.e. fnn
Its parameter is km which has a default value of 1. When I use tuning using
random search, I set the parameter of k as: lower= 0, upper=3
But it gives an error message
Error in self$assert(xs) :
Assertion on 'xs' failed: k: Element 1 is
Hello everyone,
I want to evaluate the cart learner with different (i.e. ideally 10
different) resampling methods. My questions are:
(1) How should I specify the list of resampling methods?
(2) Should I specify the resampling lists in the beginning or in the
benchmark?
(3) Currently mlr3 shows
Hello everyone,
I performed a parameters optimization in mlr3 and then pass it to the
benchmark to compare the optimized and a baseline learner, but it give an
error message and does not recognize the optimized (i.e. at) learner.
df=readARFF("nasa93.arff")
task=TaskRegr$new("df", df, target =
icated exclusively to this test.
> It is called ScottKnotESD rather unoriginally.
>
> Michael.
>
> On 02/12/2020 10:32, Neha gupta wrote:
> > I have the following data from resample
> >
> > svm= svm$resample$RMSE
> > nn= nn$resample$RMSE
> >
> > we p
I have the following data from resample
svm= svm$resample$RMSE
nn= nn$resample$RMSE
we perform the statistical tests like
wilcox.test(svm, nn)
I have a question, can we perform the scott-knot ESD test here? if yes, how?
[[alternative HTML version deleted]]
OK thanks a lot David, I hope it will work for me.
Best regards
Neha
On Saturday, July 25, 2020, David Winsemius wrote:
>
> On 7/24/20 3:08 AM, Neha gupta wrote:
>
> O, I am very sorry for that, I have now included
>
> output of dput is: structure(list(unique_id = c(&qu
pling = "rose")
set.seed(30218)
ct <- train(`Bug class` ~ ., data = tr, method = "pls", metric = "AUC", preProc
= c("center", "scale", "nzv"), trControl = boot3)
getTrainPerf(ct)
On Thu, Jul 23, 2020 at 11:50 PM Jeff Newmiller
wrote:
, 2020 at 10:47 PM David Winsemius
wrote:
>
> On 7/23/20 9:34 AM, Neha gupta wrote:
>
>
> Hello David, file not found should be the path problem I guess. I just
> forgot the pROC library, which I included here. These are all the libraries
> I am using.
>
> library(caret)
&g
?utm_medium=email_source=link_campaign=sig-email_content=webmail_term=icon>
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On Thu, Jul 23, 2020 at 4:01 PM Neha gupta
c("center", "scale", "nzv"), trControl = boot3)
getTrainPerf(ct)
On Thu, Jul 23, 2020 at 1:08 AM David Winsemius
wrote:
>
> On 7/22/20 3:43 PM, Neha gupta wrote:
> > Hello,
> >
> >
> > I get the following error when I
Hello,
I get the following error when I use the ROSE class balancing method but
when I use other methods like SMOTE, up, down, I do not get any error
message.
Something is wrong; all the ROC metric values are missing:
ROC Sens Spec
Min. : NA Min. : NA Min. : NA
1st Qu.: NA 1st Qu.: NA 1st
keep coming along and
> sticking things into it."
> -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
>
>
> On Mon, Jun 8, 2020 at 8:38 AM Neha gupta
> wrote:
>
>> I have a model NN, which has 10 piece of data in 10 folds of test (ts)
>&
I have a model NN, which has 10 piece of data in 10 folds of test (ts) data
such as 0.1, 0.5, 0.3 etc.
And another model SVM, which also have this type of information. I usually
visualize it like:
boxplot (NN, SVM)
I have two questions?
(1) I want to ask how can I visualize them via ggplot?
ot;data.frame")
>
On Wed, Apr 15, 2020 at 11:55 PM Jeff Newmiller
wrote:
> Someday, Neha, you will learn to post a reproducible example using plain
> text. I hope.
>
> Try using the reprex package.
>
> On April 15, 2020 2:32:03 PM PDT, Neha gupta
> wrote:
>
What is the problem is the code..
d=readARFF("CM1.arff")
index <- createDataPartition(d$Defective, p = .70,list = FALSE)
tr <- d[index, ]
ts <- d[-index, ]
index_2 <- createFolds(tr$Defective, returnTrain = TRUE, list = TRUE)
ctrl <- trainControl(method = "boot", number=100, index = index_2,
If we have to perform 100 iterations of the out-of-sample bootstrap, do we
need to just enter the number 100 as:
trainControl (method="boot", number = 100)
Regards
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list --
Hello
I am using feature selection using AutoSpearman but I have no idea what to
do after the 'plotVarClus' function, which is just a graph and red bars are
going out of the input metrics.
My question is what is the next step to perform the feature selection
(exclude correlated metrics).
I used
Hi
If I have one dataset , then we can perform statistical tests as:
d=read.csv("dataset1)
svm <- train(bug ~ ., data = tr,
--
---
getTrainPerf(svm)
rf <- train(bug ~ ., data = tr,
--
---
getTrainPerf(rf)
wilcox.test(svm$resamples$RMSE, rf$resamplesRMSE)
But if we
an convert RMSE to
> VEcv using tovecv in spm.
> Hope this helps,
> Jin
>
> On Fri, Mar 13, 2020 at 8:08 AM Neha gupta
> wrote:
>
>> Hi
>>
>> I have a regression based data where I get the RMSE results as:
>>
>> SVM=3500
>> ANN=4600
>&
>
> See base R function ?scale for another way of scaling data.
>
> As for the second question, if your RMSE vector had values in the range
> 2900 to 4600 and the y axis limits are c(0, 1), how can you expect to
> see anything?
>
> Hope this helps,
>
> Rui Barradas
>
&g
Hi
I have a regression based data where I get the RMSE results as:
SVM=3500
ANN=4600
R.Forest=2900
I want to know how can I make it so that its values comes as 0-1
I plot the boxplot for it to indicate their RMSE values and used,
ylim=(0,1), but the boxplot which works for RMSE values like
ot;ab","cd","ef","gh","lm","pq","xy","yz") )
>
> Jim
>
> On Fri, Mar 6, 2020 at 7:07 AM Neha gupta
> wrote:
> >
> > Hi
> > I have a boxplot using the following code and I get the boxplots, but
Hi
I have a boxplot using the following code and I get the boxplots, but at
the x axis, instead of 1,2,3, how can I get my own captions like , random,
grid, genetic, pso etc.
a=ran_CV$results$MAE
aa=grid_CV$results$MAE
b=ran_boot$results$MAE
bb=grid_boot$results$MAE
c=ran_locv$results$MAE
Hello to all.
I have a small confusion, kindly if you could suggest something?
I need to compare two algorithms, CART and NNET in R. The results show that
NNET has better MAE value, but I want to find if there is any significance
difference between the results of both algorithms? The dataset I
) runs without errors?
>
> Hope this helps,
>
> Rui Barradas
>
> Às 16:55 de 29/12/19, Neha gupta escreveu:
> > Hello Rui,
> >
> > I use caret and CART
> >
> > search <- train(Results ~ ., data = training,
> >
Hi
I have continuous data I.e regression based. If I have residuals for
algorithm 1 and algorithm 2 like this,
X=resid(alg1) and y=resid (alg2)
Can we perform the Wilcoxon test as.
Wilcox.test(x,y)
Thanks
[[alternative HTML version deleted]]
Hi
I am using Simulated annealing to tune the parameters of xgbtree for
regression dataset. When I run the code to tune the parameters of SVM and
RF, it works but when I run the same code for xgbTree, it gives stops and
give error:
Something is wrong; all the MAE metric values are missing:
hy you are getting NAs:
>
> log10(0)
> [1] -Inf
>
> Another possibility is that the values used in the initial calculation
> have been read in as factors.
>
> Jim
>
> On Mon, Dec 23, 2019 at 10:55 AM Neha gupta
> wrote:
> >
> > Hi Jim
> >
> > Th
ck the object that you are passing to san_res.
>
> Jim
>
> On Mon, Dec 23, 2019 at 4:17 AM Neha gupta
> wrote:
> >
> > I am using the following code to tune the 4 parameters of Gradient
> Boosting
> > algorithm using Simulated annealing (optim). When I run the program,
&
I am using the following code to tune the 4 parameters of Gradient Boosting
algorithm using Simulated annealing (optim). When I run the program, after
few seconds it stops and displays the following error:
I point out here that the same code works for RF ( mtry parameter) and SVM
(cost and sigma
Hi, I am using Simulated Annealing to tune the parameters of the R.Forest.
The code I use is below:
My question is that did I do correctly when I used the values 1:24 in the
optim function of the Simulated annealing? I used 1:24 because my number of
features in the dataset are 24, and the mtry
gt; [1]
> http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example
>
> [2] http://adv-r.had.co.nz/Reproducibility.html
>
> [3] https://cran.r-project.org/web/packages/reprex/index.html (read the
> vignette)
>
> On December 20, 2019 3:23:14 PM P
;zv"),
trControl = ctrol)
On Sat, Dec 21, 2019 at 12:23 AM Neha gupta
wrote:
>
> The code is described below: I need to find the RMSE and MAE
>
> ///read data which have data types of integer and number.
> data=read.csv("fault.csv")
>
>
scale", "zv"),
trControl = ctrol)
On Fri, Dec 20, 2019 at 11:31 PM Neha gupta
wrote:
> When I run my code, I get the following error and suddenly the execution
> of the script stops. Where in my data is the problem?
>
> Something is wrong; all t
When I run my code, I get the following error and suddenly the execution
of the script stops. Where in my data is the problem?
Something is wrong; all the MAE metric values are missing:
RMSERsquaredMAE
Min. : NA Min. : NA Min. : NA
1st Qu.: NA 1st Qu.: NA
Hi , I know nobody will respond to my query as I asked few in the past and
no answer received for any of my questions. However, I am asking here with
the hope it will get responded.
I am using bayesian optimization to tune the parameter of mtry for random
forest but it gives me the error: Error
I am using xgboost hyperparameter tuning for the value of rmse. I used the
following method which returns two values ; mean which is like - 1200.12
and Best value like - 960. I guess the first value is average value and the
second is the best rmse value returned by the algorithm.
Now if we have
How the hyperparameter settings via adaptive resampling is different from
the one obtained from grid search or random search? Both grid and random
searches provide best parameters values and the same is achieved using
adaptive resampling.
[[alternative HTML version deleted]]
Hello to all. I am new to R language, just read few tutorials.
I have a question, we use trainControl and train function for k fold cross
validation and we don't need to predict the data separately using predict
function for test data.
But how when we have a separate test set? How can we use the
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