Re: [R] Linux R / Windows client

L.S. On 03/18/2012 02:39 PM, Mag Gam wrote: correct, but for StatET i believe I can only use the local R installed to do my computation. My intention is to use my Linux server -- which as 128GB of memory and 32 cores to do my calculations and I want to connect to it via Windows Eclipse GUI.

Re: [R] Eclipse StatET - create own code formatting

Hi Syrvn, On 11/19/2011 03:08 PM, syrvn wrote: does anybody know whether it is possible to create its own code formatting rules? Defining rules under Eclipse - Preferences - R Code Formatting is so limited. There is a dedicated mailing list for StatET here

Re: [R] Access R functions from web

Hi Caveman, On 06/25/2011 11:18 AM, Orvalho Augusto wrote: I need a way to send R objects and call R functions from web. Is there any project close or similar to that? I want to be able to send an HTTP rquest from an existing application with some data. And obtain a plot from R. This is one

Re: [R] R licence

On 04/07/2011 04:46 PM, Ista Zahn wrote: I don't think R-help is the appropriate place for this question. Probably you will have more luck at http://www.theattorneysforum.com/ or some such. I would hope, though, there are means for community members to express their concerns in some medium of

Re: [R] Revolution Analytics reading SAS datasets

On 02/10/2011 07:44 PM, David Smith wrote: The SAS import/export feature of Revolution R Enterprise 4.2 isn't open-source, so we can't release it in open-source Revolution R Community, or to CRAN as we do with the ParallelR packages (foreach, doMC, etc.). It is, though, available for download

Re: [R] Problem with xlsx package

On 02/10/2011 05:30 PM, Gabor Grothendieck wrote: On Thu, Feb 10, 2011 at 10:49 AM, Nikhil Joshinikhiljo...@gmail.com wrote: Gabor, thanks for the suggestion. I did as you have suggested- Started a clean session of R and set the java option. Then I sourced the library and tried to read the

Re: [R] rj packages and eclipse

Hi Sebastián, You can find the rj package here: http://www.walware.de/it/downloads/ and the installation instructions here: http://www.walware.de/it/statet/installation.mframe?jump=install-rj-rpkg If you have further questions, don't hesitate to join the StatET-specific mailing list at

Re: [R] R-/Text-editor for Windows?

Hi Sascha, On 01/28/2011 07:55 PM, Sascha Vieweg wrote: Tinn-R (http://www.sciviews.org/Tinn-R/) is one of the topmost suggestions when googling an R-(text-)editor for Windows. However, to me it appears dissappointing that Tinn-R does not handle utf-8 (mac-roman, or any other) encoded R-scripts

Re: [R] using gsarima package with R

Hi Nandan, On 01/23/2011 08:52 PM, nandan amar wrote: I am trying to use function garsim from package gsarima. I can download gsarima package from http://cran.fyxm.net/web/packages/gsarima/index.html for linux. But how I can add it to R. I have compiled and installed R from its R source code

Re: [R] using gsarima package with R

: could not find function install.pacakges You spelled it incorrectly. Best, Tobias On 24 January 2011 03:10, Tobias Verbeke tobias.verb...@openanalytics.eu wrote: Hi Nandan, On 01/23/2011 08:52 PM, nandan amar wrote: I am trying to use function garsim from package gsarima. I can download

Re: [R] editor for MacOS

On 12/16/2010 04:54 PM, Marc Schwartz wrote: On Dec 16, 2010, at 9:41 AM, Troels Ring wrote: Dear friends - I'm using Tinn-R in Windows and find it OK. My son is running MacOS and is just starting using R and I know nothing about MacOS and R but we seem to have difficulties in finding

Re: [R] StatET: Connecting to a remote rterm instance

Dear WanderingWizard, On 12/02/2010 07:58 PM, WanderingWizard wrote: Is it possible to use Eclipse (StatET) to connect to an rterm instance running on another computer? Yes. You can launch, disconnect and reconnect to a remote R console. It looks like it should be easy, but when I select

Re: [R] R + Linux Ubuntu 10.10

Hi Maximilien, On 11/20/2010 01:51 PM, Maximilien Renard wrote: I've just installed Linux (K)Ubuntu 10.10 as well as R and I'm stuck with a very annoying problem. I've compiled the latest R version from the sources without any problem, sadly when I start R in a terminal, it does not behave as

Re: [R] class matrix lost when extracting a row from matrix

On 09/19/2010 10:02 AM, h...@wiseadvice.eu wrote: Good morning experts! situation: class(myMatrix)=matrix class(myMatrix[(1:2),]))=matrix class(myMatrix[1,])= character consequences are far reaching as, for instance colnames(myMatrix[(1:2),]) != colnames(myMatrix[1,]) or

Re: [R] split file equivalent in R

Hi, On 07/19/2010 11:56 AM, Iasonas Lamprianou wrote: (a)in SPSS PASW there is a 'split file' command is repeats the same analysis for all sub-groups. Is there a split file equivalent in R? There is a by command in base R, but for this type of problems Hadley Wickham has written a nice

Re: [R] Using Ubuntu as a Server

Hi Leandro, On 07/10/2010 08:46 PM, Leandro Marino wrote: I want to know how can I configure R in a Ubuntu to be a server. I am planning to use R in a Windows machine with Tinn-R, but I want R running at an Ubuntu Lucid machine. How can i do this? One possibility is to use Eclipse/StatET

Re: [R] Good Package(s) for String and URL processing?

On 07/02/2010 05:51 AM, Erik Iverson wrote: Ralf B wrote: Are there packages that allow improved String and URL processing? E.g. extract parts of a URLs such as sub-domains, top-level domain, protocols (e.g. https, http, ftp), file type based on endings, check if a URL is valid or not, etc...

Re: [R] Agreement

Hi Grégoire, HB8 wrote: Has Lawrence Lin's code been ported to R? http://tigger.uic.edu/~hedayat/sascode.htmlhttp://tigger.uic.edu/%7Ehedayat/sascode.html One of Lin's methods (CCC) is available in function epi.ccc of the epiR package. Best, Tobias

Re: [R] Symbols in biplot

Hi Ara, Ara Kooser wrote: I just started in on R today. I am at the point where I am trying to distinguish different groups of data (hydrochemical data) in biplot. I search and found a post about converting the sample number in biplot to a symbol like x or + temp - matrix(runif(50),

Re: [R] StatEt: Error R Object Browser Update java.lang.NullPointerException

Hi Roman, Roman Luštrik wrote: Have you managed to resolve this? I get the same error on Karmic Koala as well. Are you sure you're using the latest StatET, i.e. version 0.8.2, installed from the update site (for Eclipse 3.5) at http://download.walware.de/eclipse-3.5 Best, Tobias

Re: [R] Image RGB calculation

Hi Ole, ole_roessler wrote: I need to read an image (mostly jpg) and split the channel of this image to an colour channel calculation like this: sqrt(R²+G²+B²) Do you have an idea what package I need to use for it, and is it possible? For general image processing capabilities within R, I

Re: [R] GSL in C code for R

Hi Sebastian, J. Sebastian Tello wrote: Dear fellow R users, I am now investing time in learning how to use compiled C code to produces functions that can be used in R. I am just starting, and there is much that I need to learn, so I have a question that might be straight forward. I am

Re: [R] R package documentation

Hi Sébastien, Sébastien Bihorel wrote: I am currently writing the documentation for my first package. I have created a short user manual using sweave/pdflatex which is distinct from the manual/summary-of-package-functions created by R CMD CHECK. I was wondering how could I seamlessly combine

Re: [R] R package documentation

be done using e.g. the pdfjam toolbox by David Firth. http://go.warwick.ac.uk/pdfjam Best, Tobias On Wed, Apr 14, 2010 at 6:52 AM, Tobias Verbeke tobias.verb...@openanalytics.eu mailto:tobias.verb...@openanalytics.eu wrote: Hi Sébastien, Sébastien Bihorel wrote: I am

Re: [R] Design of a survey using the survey package

Tom La Bone wrote: I have looked through the new Complex Surveys book and the documentation for the survey package and it appears to me that there are no functions in survey that help one to design a sampling scheme. For example, in the book section 2.8 discusses the design of stratified

Re: [R] Please Post Planned Contrasts Example in lme {nlme}

Hi Martin, Martin Turcotte wrote: Hi I am running some linear and non-linear mixed effect models and would like to do some planned contrasts (a priori contrasts) I have looked in the help and in many forums and it seems possible to do so but don't understand how to write the function and I

Re: [R] Writing dataframes to SAS XPT format

Dennis Fisher wrote: Colleagues, On occasion, I need to output an R dataframe to a file in SAS XPT format. Although the foreign package supports reading of XPT files and writing to a format that SAS can read, it does not support writing to XPT format (confirmed with Thomas Lumley, the

Re: [R] dmvnorm masked by emdbook

Hi Dan, For this to work, the copula package should explicitly import dmvnorm from the mvtnorm package by including importFrom(mvtnorm, dmvnorm) in their NAMESPACE file. You can do the same thing and rebuild + reinstall the package to solve your problem quickly, but there might be some other

Re: [R] find CP

Hi, assaedi76 assaedi76 wrote: Thanks in advance: I need to use the function mle.cp in R. When I run this function I recive result - mle.cp(y.hald~x.hald) Error: could not find function mle.cp could some one give me a help? There is a function of that name in the wle package. Make

Re: [R] Ubunut + Eclipse + StatET: Console terminates upon error

Hi Dirk, Janko, Dirk Eddelbuettel wrote: On 11 March 2010 at 19:19, Janko Thyson wrote: | I'm trying to set up Eclispe (3.5.1) with the StatET-Plugin (0.8.1) under | Ubuntu (Karmic) and found it strange that my console terminates every time | something in a script produces an arbitrary error

Re: [R] Ubunut + Eclipse + StatET: Console terminates upon error

Hi Janko, I'm not an rJava install expert (on all but my own system I often end up setting the appropriate environment variables related to Java manually before launching the R CMD INSTALL for the package), but with respect to the choice Rterm vs. RJ Console, I would strongly advise to use the

Re: [R] Statet on Eclipse: ${project_path} is empty

Hi Paul, Paul wrote: I'm tryign to use Statet on Eclipse on my Kubuntu Karmic PC. I've set everything up and I can start the R configuration, but the working directory is set to my home directory. If I set the start in directory to ${worspace_loc}/${project_path} I can't start the console,

Re: [R] Hartley's table

Hi Silvano, Is it library(SuppDists) ?maxFratio you are looking for ? Best, Tobias Silvano wrote: Hi, Does anyone know how to generate Hartley's table in R? -- Silvano Cesar da Costa Departamento de Estatística Universidade Estadual de Londrina Fone:

Re: [R] counting the number of ones in a vector

Nutter, Benjamin wrote: What you did works well. You could also try the following. table(x)[1] or sum(x==1) HTH, Tobias -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Randall Wrong Sent: Friday, February 26, 2010 9:41 AM

Re: [R] text editors

Sharpie wrote: Dwayne Blind wrote: Dear all, Do you use a text editor ? What would you recommend for Windows users ? What about Tinn-R ? Thank you very much, Dwayne Learning a text editor is a significant and very valuable investment of your time. In order to maximize the return from

Re: [R] R or C++ on FreeNX servers

Hi Murray, Murray Jorgensen wrote: I have just found out that the machine learning group in our Faculty has a lot of spare capacity on their FreeNX servers. I do not know a lot about these beasts but I understand that they are a free version of something produced by a firm called NoMachine.

Re: [R] serialized plot object (2 years later)

Hi Jack, Jack Tanner wrote: About 2 years ago, Tobias Verbeke asked: I am looking for a way to capture the binary string that in normal use of graphics devices will bewritten to (most commonly) a file connection... Is there a way of capturing the binary `jpeg string' [generated by jpeg

Re: [R] SOM library - where do I find it

Hi tdm, tdm wrote: R version 2.9.2 (2009-08-24) - for windows library(SOM) Error in library(SOM) : there is no package called 'SOM' Where can I get the SOM library from? Thanks in advance R is case-sensitive, so install.packages(som) library(som) ?som

Re: [R] refactoring in R

Hi Peng, Some of the refactoring methods I identified back then were integrated into Eclipse/StatET in the mean time. StatET by the way contains some extensions that were not in the original proposal on that website. For the announcement of the latest release, see

Re: [R] refactoring in R

/installation.mframe For general use, I would just take Eclipse Classic. HTH, Tobias On Sat, Nov 14, 2009 at 5:46 AM, Tobias Verbeke tobias.verb...@openanalytics.be wrote: Hi Peng, Some of the refactoring methods I identified back then were integrated into Eclipse/StatET in the mean time. StatET by the way

Re: [R] editors for R

Hi Mark, After reviewing the IDE/Script Editors article at sciviews.org, I wanted to pose a quick question here to see if anyone can offer an opinion or commentary about GUI editors that can be installed in a Windoze environment that allow editing/saving of remote .R files and running R

Re: [R] How do I do simple string concatenation in R?

Tobias Verbeke wrote: Hi Ari, How do I do simple string concatenation in R? For example: A = klm B = jjj How can I assign a value to C such that C == klmjjj is True? paste(A, B, collapse = ) Oops. paste(A, B, sep = ) Best, Tobias __ R-help@r

Re: [R] How do I do simple string concatenation in R?

Hi Ari, How do I do simple string concatenation in R? For example: A = klm B = jjj How can I assign a value to C such that C == klmjjj is True? paste(A, B, collapse = ) See ?paste HTH, Tobias __ R-help@r-project.org mailing list

Re: [R] How to compile R with command completion?

Peng Yu wrote: I want to compile R with command completion. But I don't find such an option in configure. Can somebody let me know how to enable command completion in an R session? AFAIK this is not an option you set when compiling. Did you try to type a letter (say 'l') and press the TAB key

Re: [R] Running an ANOVA with a BY

, .(Analyte), model)) HTH, Tobias Tobias Verbeke-2 wrote: baxterj wrote: I have a simple 1 way anova coded like summary(ANOVA1way - aov(Value ~ WellID, data = welldata)) How can I use the BY function to do this ANOVA for each group using another variable in the dataset?? I tried coding it like

Re: [R] Running an ANOVA with a BY

baxterj wrote: I have a simple 1 way anova coded like summary(ANOVA1way - aov(Value ~ WellID, data = welldata)) How can I use the BY function to do this ANOVA for each group using another variable in the dataset?? I tried coding it like this, but it doesn't seem to work. summary(ANOVA1way -

Re: [R] for cycle with uncontinuous numbers

Hi nice people, :-) I would like to do a for cycle but i wish it to assume only the numers 50, 100, 200, 300, 900 and 2343 I tried to do something like x - c(50,100,200,300,900,2343) for (i in x){ #. } But it didn´t work If you would use a reproducible code example we could point out

Re: [R] Viewing Function Code

Michael Pearmain wrote: I'd like to see the function code behind the barplots2() function in the gplots package, however i come across a bit of a stumbling block of a hidden function, can anyone help? library(gplots) methods(barplot2) [1] barplot2.default* Non-visible functions are

Re: [R] Google's R Style Guide

Vitalie S. wrote: On Fri, 28 Aug 2009 16:40:53 +0200, Kevin Wright kw.s...@gmail.com wrote: On Fri, Aug 28, 2009 at 8:22 AM, Ted Harding ted.hard...@manchester.ac.ukwrote: On 28-Aug-09 12:59:24, Esmail wrote: Perhaps most of you have already seen this?

Re: [R] RE xcel Macro Mode

spencerg wrote: Have you looked at RExcel and the RExcelInstaller package? There is now a companion book: Heiberger and Neuwirth (2009) R Through Excel: A Spreadsheet Interface for Statistics, Data Analysis, and Graphics (Springer)? Both Amazon and the Springer web site say it's

Re: [R] Check functions in package

Steve Lianoglou wrote: On Jul 28, 2009, at 4:16 PM, voidobscura wrote: Hi, I run R on a server via SSH, over a terminal. After loading a specific package, how do I know what functions are in that package? Is there any way to list or display them? Here's one way. Let's say I load the

Re: [R] error when installing rjags

Hi Mark, What command did you use exactly to install the package ? The following blog post by Yu-Sung Su http://yusung.blogspot.com/2009/01/install-jags-and-rjags-in-fedora.html indicates that some configure.args might need to be set to succesfully install the package (at least on Fedora 10)

Re: [R] time attribute from a file

Erin Hodgess wrote: Dear R People: I am reading in a file via read.table. Is there a way to bring in the time that the file was created, please? Use file.info on the same file ? HTH, Tobias __ R-help@r-project.org mailing list

Re: [R] Comprehensive power analysis/sample size package in R?

Frank E Harrell Jr wrote: Greg Snow wrote: I don't know of a single package that is comparable to PASS, but the R system itself is the most comprehensive tool available for power and sample size computations. For the simple cases you already found the pwr package, there are also some power

Re: [R] productivity tools in R?

seeliger.c...@epamail.epa.gov wrote: snip There is no IDE for R in the same way that there is for other languages -- something that supports integrated versioning, debugging and testing, perhaps using Eclipse. Boy howdee, I hope someone knows otherwise. There is a feature-rich R plug-in

Re: [R] Roxygen vs Sweave for S4 documentation

On Mon, Jun 22, 2009 at 2:18 PM, Douglas Batesba...@stat.wisc.edu wrote: On Mon, Jun 22, 2009 at 7:12 AM, Martin Maechlermaech...@stat.math.ethz.ch wrote: TobiasV == Tobias Verbeke tobias.verb...@openanalytics.be     on Sun, 21 Jun 2009 08:25:07 +0200 writes:    TobiasV Hi Ken,     I have

Re: [R] Roxygen vs Sweave for S4 documentation

Hi Ken, I have been using R for a while. Recently, I have begun converting my package into S4 classes. I was previously using Rdoc for documentation. Now, I am looking to use the best tool for S4 documentation. It seems that the best choices for me are Roxygen and Sweave (I am fine with

Re: [R] Recursive partitioning algorithms in R vs. alia

Wensui Liu wrote: well, how difficult to code random forest with sas macro + proc split? if you are lack of sas programming skill, then you are correct that you have to wait for 8 years :-) It is true one can use the macro language to obtain some control flow the plain SAS language and its

Re: [R] Recursive partitioning algorithms in R vs. alia

Wensui Liu wrote: in terms of the richness of features and ability to handle large data(which is normal in bank), SAS EM should be on top of others. Should be ? That is not at all my experience. SAS EM is very much lagging behind current research. You will find variants of random forests in R

Re: [R] Issues getting R to write image files

Hi Kenny, Have spent the last couple of days learning R and shell scripting to do batch plotting jobs. I have had success getting R to complete a filled contour plot and output to a file (.jpg or .tiff etc). However, when I try to do the same thing with the simple plot command the script seems

Re: [R] Analisys in Multidimensional contingency tables

Hi José, Hi everyone, Im trying to make an analysis of multidimensional contingency tables using R. I' working with the Agresti example where you have the data from 3 categories. The thing is how can I do the analisys using the G2 statistics. Somebody can send me an Idea? Please find below a

Re: [R] Sweave \Sexpr{} advice please

Hi Kyle, First off, my deepest gratitude to the Sweave developers: this tool has improved my quality greatly. A question in my work I use \Sexpr{} statements scalar values and the xtable package for all manner of tables. What I'd like to do is to use a vector inline, rather than a whole

Re: [R] caching of the .Rprofile file

Hi Tom, It seems that if I make a change to the .Rprofile file in my working directory, it is not immediately reflected when the session is restarted. (I am using statET and rJava) Is that something I should expect? No. Is your launch configuration of R in StatET configured such that it

Re: [R] Vim R plugin-2

Hi Jose, Jose Quesada wrote: snip In my view, R as a language is very good but the tools around it are not good. When a matlab person tries R, their first comments are always how poor the environment is. Sure, one can have a debugger (with a crappy GUI in TK), and there's some editor support,

Re: [R] running R on netbooks/minis?

Zeljko Vrba wrote: On Sun, May 03, 2009 at 03:27:43AM -0500, Erin Hodgess wrote: Is it possible to run R on a netbook/mini, please? There should be no reason not to be possible, if the notebook uses an OS that R supports. For the eeepc, e.g., documentation has been contributed on the R wiki

Re: [R] Can't install package glmnet

Uwe Ligges wrote: Liang Zhang wrote: I am just wondering how to solve this installation problem. As I said, ask your admin to install suitable compilers. And 'suitable compilers' in this case means to install the GNU compiler collection gcc 4.x.y. Contrary to gcc 3.x.y (which only has a

Re: [R] Problem with apply

Marc Schwartz wrote: The cut() function will do what you want in a vectorized fashion. See ?cut However, that being said, I would strongly advise that you read Frank's page on the categorizing of continuous variables: http://biostat.mc.vanderbilt.edu/twiki/bin/view/Main/CatContinuous

Re: [R] Neural Networks in R - Query

Hi Lars, I'd like to ask your guidance regarding the following two questions: (i) I just finished reading Chris Bishop's book Neural Networks for Pattern Recognition. Although the book gave me good theoretical foundation about NN, I'm now looking for something more practical regarding

Re: [R] Presenting R Results in Webpages

Hi Jason, I apologize in advance that this question is not specific to R, but I thought some R users may be using this in their work process flow. I would like to be able to have a tool (prefer scriptable) that will take two images and some pre-written text and put it on an simple webpage.

Re: [R] Tinn-R pdf()

Hi Henning, thanks for your help, with solved the problem, although i don't why, because when using the R editor accessible via the R console i created many many lattice plots with the code i posted, i.e. without the print() command. At the command line, R objects (including lattice plots

Re: [R] Public R servers?

Hi Aaron, Earlier I posted a question about memory usage, and the community's input was very helpful. However, I'm now extending my dataset (which I use when running a regression using lm). As a result, I am continuing to run into problems with memory usage, and I believe I need to shift to

Re: [R] help with ggplot2 -- ggpoint function missing?

Hi, I'm trying to follow the ggplot introduction here: http://had.co.nz/ggplot/ggplot-introduction.pdf I've installed ggplot2 with install.packages(ggplot2, dep=T) but when I try to run print(ggpoint(p, list(colour = sex))) I get an error: Error in print(ggpoint(p, list(colour = sex))) :

Re: [R] oggetto gstat

Hi Giuseppe, The language of this mailing list is English. Ciao a tutti ho appena iniziato ad utilizzare R per ora per attuare un'analisi geostatistica di dati. Volevo sapere come poter creare un oggetto gstat partendo da un file testo(che ho gia importato con read.table)e che contiene 3

Re: [R] Extract statistics from lm()

Hi, Hi, perhaps this question was answered previously however I could not find them. My problem is how how to extract a particular statistic from the result given by lm(). For e.g. ctl - c(4.17,5.58,5.18,6.11,4.50,4.61,5.17,4.53,5.33,5.14) trt -

Re: [R] How to connect R and WinBUGS/OpenBUGS/LinBUGS in Linux in Feb. 2009

Uwe Ligges wrote: Hi all, I've managed to get JAGS working on my Ubuntu Hardy Linux with a 32-bit computer and AMD processors using R 2.8.1. JAGS is great. I've read that JAGS is the fastest, but that hasn't been my experience. At any rate, I have more experience with WinBUGS under Windows

Re: [R] twitter useRs?

Hi José, I wonder if there are any useRs sharing day-to-day realizations/tricks on twitter... Seems like a good place for those things that are good findings, but one is too lazy to blog about them... I don't twitter, but I wrote an R package to read and write tweets from the R command line

Re: [R] Next-generation sequencing data analysis with R

Hi Frank, Hello, everyone! I have a set of proteomic data .And I do a solexa sequencing in the corresponding sample. So I get much mass sequencing data. How can I using R to integrate those two set data. I wonder if some tool or R package would help me? You are more likely to receive a

Re: [R] updating contents of a package

Hi Markus, I read through the Writing R Extensions document and am able to now create my own packages/libraries which so far are just well documented collections of my own R functions. I use package.skeleton() and the tools package to build these packages. However, it is not clear to me how to

Re: [R] Problems in Recommending R

friedrich.lei...@stat.uni-muenchen.de wrote: On Mon, 2 Feb 2009 18:14:03 +0530, Ajay ohri (Ao) wrote: Plain HTML coding is simple enough for this list ( I think)...but aesthetic designhmm In most cases one can do more than most think using HTML and CSS: Our universities corporate

Re: [R] Test Driven Development in R

Jose Quesada wrote: Hi, I wonder what kind of interest there is on Test Driven Development (TDD) in R. Test Driven Development consists of writing the test before the function, and iteratively build the function until it passes the test. Python and Ruby (specially Ruby) have very strong

Re: [R] Can't load Rgraphviz on windows-based R

L.S., I am facing the same problem. I followed the all instructions given in help file and some steps of previous discussion (from google search) but I could not install package Rgraphiviz in windows. I tried even the instructions given to install Bioconductor package then only able to

Re: [R] R and SPSS

There exists a R plug-in for SPSS. You can find it on the SPSS website. ... and there is a page on the R wiki: http://wiki.r-project.org/rwiki/doku.php?id=tips:callingr:spss HTH, Tobias I have a code in R. Could anyone give me the best possible way (or just ways!) to integrate it in

Re: [R] eclipse and R

Hi Ruud, I forwarded your message to the StatET (R in Eclipse) list; there might be StatET users with a similar setup as yours on that list (and the StatET developer is more likely to pick up your question there). Best, Tobias Hello, I am trying to install Eclipse and R on an amd64 machine

Re: [R] SAS - surveyselect in R?

Hi Markus, is there a R function or package containing a similar functionality then the SAS PROC SURVEYSELECT? I think you need the sampling package http://cran.r-project.org/web/packages/sampling/index.html It is a package accompanying the book Tillé, Y. (2006). Sampling Algorithms, New

Re: [R] TINN-R's R Explores - Available for other editors?

Hi Stefan, I am using TINN-R for working with R and for that purpose it is a very handy editor, in particular the R-Explorer that shows the existing objects and their properties is worth money. But I want to move to a more flexible editor (in particular for Latex) and was thinking of WinEdt (or

Re: [R] plot - central limit theorem

Hi Joerg, Is there a way to simulate a population with R and pull out m samples, each with n values for calculating m means? I need that kind of data to plot a graphic, demonstrating the central limit theorem and I don't know how to begin. So, perhaps someone can give me some tips and

Re: [R] Automatic code diagramming for R?

Ben Bryant wrote: Greetings - Is anyone aware of an automatic code diagrammer/flow chart creator that works for the R language (either a contributed package, or external software)? I need to explain some code structure of a package I'm working on to non-R users, and would find it extremely

Re: [R] best material for programmers?

Barry Rowlingson wrote: 2008/9/28 June Kim [EMAIL PROTECTED]: Hello, What is the best material(book, pdfs, ...) for programmers, who have extensive experience in other programming languages, to learn R programming? I think there are many materials on how to use R for specific statistical jobs,

Re: [R] Dream of a wiki GUI for R

Hi, I am just writing a draft to introduce confidence intervals of various effect sizes to my students. Surely, I'll recommend the package MBESS in R. Currently, it means I have to recommend R's interface at first. As a statistics teacher in a dept of psychology, I often have to reply why not

Re: [R] Two way clustering

Hi, I am trying to do two-way clustering (using information of both observation and variables). Is there any package available in R. There is a package for biclustering in development on R-Forge http://r-forge.r-project.org/projects/biclust/ Slides from a recent presentation of the package

Re: [R] Genmod in SAS vs. glm in R

Ajay ohri wrote: Whats the R equivalent for Proc logistic in SAS ? glm with the appropriate family (binomial) and link, I guess. There is a book 'R for SAS and SPSS users' forthcoming http://www.springer.com/statistics/computational/book/978-0-387-09417-5 Is there a stepwise method there

Re: [R] non-negative least squares

Terry Therneau wrote: I have a problem whose solution requires non-negative least squares. That is minimize sum(y - Xbeta)^2 subject to beta =0 Splus has the nnls.fit command. Is there an R alternative? There is a package nnls on CRAN by Kate Mullen and Ivo van Stokkum:

Re: [R] Quantitative risk analysis with R

Dear Graham, Recently a course with this title, from Vose consulting, was announced on the list. Does anyone know of any books/websites/downloadable tutorials etc that cover the same ground. There is an R package QRMlib on CRAN http://cran.r-project.org/web/packages/QRMlib/index.html that

Re: [R] Point-biserial correlation

Angelo Scozzarella wrote: what the command for the point-biserial correlation? Have a look at the polycor package by John Fox. http://cran.r-project.org/web/packages/polycor/index.html HTH, Tobias __ R-help@r-project.org mailing list

Re: [R] CART Analysis

Darin Brooks wrote: Good evening Does R have an extension/add-on package that assists in Classification and Regression Tree analysis? Yes. Abundantly. Have a look under `Recursive Partitioning' in the following Task View: http://cran.r-project.org/web/views/MachineLearning.html HTH,

Re: [R] childNames for xaxis grob (grid package)

Hi Paul, Can someone explain why the childNames below gives character(0) instead of the (canonical) names of the children grobs of the xaxis gTree ? [1] major ticks labels The problem is that you xaxis has an 'at' component of NULL, which means that the axis calculates its tick marks

Re: [R] Sorting / editing a table

Jörg Groß wrote: I have a problem sorting a table; When I read a table into R by x - read.table() I get something like this: V1V2V3 yes13 no26 yes39 no412 Now I want to generate a vector of V2. But R should only put in the numbers of V2 into the new

[R] childNames for xaxis grob (grid package)

Dear list, Can someone explain why the childNames below gives character(0) instead of the (canonical) names of the children grobs of the xaxis gTree ? [1] major ticks labels Many thanks in advance, Tobias ### minimal example code ### library(grid) pushViewport(plotViewport(c(5,4,4,2)))

Re: [R] Find the closest value in a list or matrix

Daniel Malter wrote: x=c(1:100) your.number=5.43 which(abs(x-your.number)==min(abs(x-your.number))) or [depending on the problem]: which.min(abs(x-your.number)) HTH, Tobias - cuncta stricte discussurus - -Ursprüngliche Nachricht-

Re: [R] Survey questions

Farley, Robert wrote: I found and loaded the survey package. ?rake and ?postStratify seem promising. Are there other packages/procedures I've missed? Are there online references that an R newbie could use to feel comfortable applying these procedures to a survey? How about a reference

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