[R] nnet: cannot coerce class c("terms", "formula") into a data.frame

2010-06-02 Thread cobbler_squad
Dearest all, Objective: I am now learning neural networks. I want to see how well can train an artificial neural network model to discriminate between the two files I am attaching with this message. http://r.789695.n4.nabble.com/file/n2240582/3dMaskDump.txt 3dMaskDump.txt http://r.789695.n4.nab

Re: [R] Linear Discriminant Analysis in R

2010-06-02 Thread cobbler_squad
Joris, Thank you, I have corrected my mistakes. I very much appreciate your time and patience. All my best, Cobbler. -- View this message in context: http://r.789695.n4.nabble.com/Linear-Discriminant-Analysis-in-R-tp2231922p2240547.html Sent from the R help mailing list archive at Nabble.com.

Re: [R] Linear Discriminant Analysis in R

2010-05-29 Thread cobbler_squad
Hi Janis, As you have suggested below is the output for the following: test.vowel <- vowel_features[,1:10] test.mask <- mask_features[,1:10] dput(test.vowel) dput(test.mask) --- NOTE: outputs are limited >>test_vowel first 12 columns are all zero (total of 26 columns) V1 V2 V3

Re: [R] Linear Discriminant Analysis in R

2010-05-29 Thread cobbler_squad
Thanks for being patient with me. I guess my problem is with understand how grouping in this particular case is used: one of the sample codes I found online (http://www.statmethods.net/advstats/discriminant.html) library(MASS) fit <- lda(G ~ x1 + x2 + x3, data=mydata, na.action="na.omit", CV=TRU

Re: [R] Linear Discriminant Analysis in R

2010-05-27 Thread cobbler_squad
Joris, You are a life saver. Based on two sample files above, I think lda should go something like this: vowel_features <- read.table(file = "mappings_for_vowels.txt") mask_features <- data.frame(as.matrix(read.table(file = "3dmaskdump_ICA_37_Combined.txt"))) G <- vowel_features[15] cvc_lda <-

[R] Linear Discriminant Analysis in R

2010-05-26 Thread cobbler_squad
Dear R gurus, Thank you all for continuous support and guidance -- learning without you would not be efficient. I have a question regarding LD analysis and how to best code it up in R. I have a file of (V52 and 671 time points across all columns) and another file of phonetic features (each vow

[R] File normalization

2010-05-25 Thread cobbler_squad
Dear all, I have a file with 57 columns (671 time points in each column) File looks like this: 10.279191 -1.203200e-02 -0.166772 6.12080e-02 0.196379 4.591900e-02 0.293689 20.267017 -1.150700e-02 -0.159463 5.85400e-02 0.187775 4.392200e-02 0.280854 30.053778 -2.

[R] argument is of length zero

2010-05-11 Thread cobbler_squad
Dear R gurus, We are working on a problem in R - the following script is getting a subset of values from a table that is read in and calculating the average of these values in the subset defined. the table looks like this: subject stim trial xmax ymax xmin ymin flag 1 4 dur1

[R] Error in from:to : NA/NaN argument

2010-04-20 Thread cobbler_squad
Hello R gurus, I am having difficulties running a chunk of code that I otherwise thought was correct.. > if (lower < max(length(IC_peaks),length(IC_valleys))) { + valley_index <- IC_valleys[lower+1] + for (i in seq(peak_index,valley_index-1)) { + IC_peaks_and_valleys <- c(IC_peaks_and_valleys, "

[R] Converting a .txt file into a matrix

2010-04-13 Thread cobbler_squad
I need to convert foo.txt file into as.matrix .txt file is a single column of numbers (i.e. -0.303904 -0.889965 -0.0270313 -0.387125 0.189837 -0.14858 -0.651178 -0.162632 0.449309 ) and I need to find out the correct syntax to read in this table as.matrix I tried as.matrix(rea

[R] Help interpreting libarary(nnet) script output..URGENT

2010-01-29 Thread cobbler_squad
Hello, I am pretty new to R. I am working on neural network classifiers and I am feeding the nnet input from different regions of interest (fMRI data). The script that I am using is this: library (MASS) heap_lda <- data.frame(as.matrix(t(read.table(file="R_10_5runs_matrix9.txt")))*10,syll =

[R] plotting in R

2010-01-15 Thread cobbler_squad
Hello, As a result of running linear discriminant analysis, I need to be able to plot the resulting file. I am not sure what the best way to do this is. So far I have tried regular plot("insert_file_name_here") command but the error it gives me is Error in plot.new() : figure margins too large h

[R] Linear Discriminant Analysis in R

2010-01-04 Thread cobbler_squad
Dear R-gurus, Here is what I need to do.. I have two .txt files that are in a matrix form (each looks something like this: 0.0334820.02238 0.026677 0.0345530.0232260.028855 0.0350170.0232620.02941 0.0362620.023306