[R] r output as html or pdf without rstudio

[Ragia .]

dear group,
is there a way to write my outputs to any kind of files ( the output contains 
text and graph) using R only without installing rstudio and using rmd  files.
thanks in advance
Ragia 
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] r output as html or pdf without rstudio

[Greg Snow]

Yes, you can use the knitr package directly (that is what Rstudio
uses, but it is its own package).

On Fri, Jan 8, 2016 at 1:16 PM, Ragia .  wrote:
> dear group,
> is there a way to write my outputs to any kind of files ( the output contains 
> text and graph) using R only without installing rstudio and using rmd  files.
> thanks in advance
> Ragia
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.



-- 
Gregory (Greg) L. Snow Ph.D.
538...@gmail.com

__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

[R] R output to Rich Text Format

[Alex Bryant]

Hi,  Does anyone know of an existing package that will output to rtf?  
Something along the lines of pdf(ds,'file.pdf') or write.csv(ds,'file.csv').

Thanks,

//
// Alex Bryant
// Software Developer
// Integrated Clinical Systems, Inc.
// 908-996-7208



Confidentiality Note: This e-mail, and any attachment to...{{dropped:13}}

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R output to Rich Text Format

[lith]

 Hi,  Does anyone know of an existing package that will output to rtf?  
 Something along the lines of pdf(ds,'file.pdf') or write.csv(ds,'file.csv').

You could use odfWeave and then use OpenOffice to generate an RTF
file.

Regards,
Tom

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R Output and ArcGIS

[Steve Murray]

Dear all,

Thanks for the replies so far.

Just to emphasise, I'm not using Excel in any way. I have many many files to 
output, so it'd take considerable time to export from R, reprocess in Excel, 
then load into Arc! On a PC I'm able to go directly from R to ArcMap (9.3) 
without having to go via Excel. I've simply been viewing the data in Notepad, 
which was fine for observing the removal of the end-of-line characters and 
general format of the data (3 columns).

My data are structured as follows:

 str(mrunoff)
'data.frame':    61538 obs. of  3 variables:
 $ Latitude : chr  5.75 6.25 6.75 7.25 ...
 $ Longitude: Factor w/ 720 levels 0.25,0.75,..: 1 1 1 1 1 1 1 1 1 1 ...
 $ Runoff   : num  0.687 2.661 0 0 0 ...

I can't use col.names=NA, as I do have column names! These are also required by 
Arc as identifiers. Also, as you can see, there are no complications in the 
variable names which, as you rightly say, can cause problems in Arc.

If anyone has any further suggestions regarding how to overcome this problem of 
generating data from R on a Mac for input to ArcGIS on a PC, then I'd be very 
grateful to hear them.

Many thanks again,

Steve


  
_
Got a cool Hotmail story? Tell us now

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R Output and ArcGIS

[Rainer M Krug]

On Tue, Jan 26, 2010 at 11:42 AM, Steve Murray smurray...@hotmail.comwrote:


 Dear all,

 Thanks for the replies so far.

 Just to emphasise, I'm not using Excel in any way. I have many many files
 to output, so it'd take considerable time to export from R, reprocess in
 Excel, then load into Arc! On a PC I'm able to go directly from R to ArcMap
 (9.3) without having to go via Excel. I've simply been viewing the data in
 Notepad, which was fine for observing the removal of the end-of-line
 characters and general format of the data (3 columns).

 My data are structured as follows:

  str(mrunoff)
 'data.frame':61538 obs. of  3 variables:
  $ Latitude : chr  5.75 6.25 6.75 7.25 ...
  $ Longitude: Factor w/ 720 levels 0.25,0.75,..: 1 1 1 1 1 1 1 1 1 1
 ...
  $ Runoff   : num  0.687 2.661 0 0 0 ...


what about changing the class from Longitude and Latitude to numeric? This
could probably solve the problem?




 I can't use col.names=NA, as I do have column names! These are also
 required by Arc as identifiers. Also, as you can see, there are no
 complications in the variable names which, as you rightly say, can cause
 problems in Arc.

 If anyone has any further suggestions regarding how to overcome this
 problem of generating data from R on a Mac for input to ArcGIS on a PC, then
 I'd be very grateful to hear them.


In addition, as far as I know, Arc can read dbf and from R, you can export
to dbf, via the package foreign - might be worth a try.

Cheers,

Rainer


 Many thanks again,

 Steve



 _
 Got a cool Hotmail story? Tell us now

 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide
 http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.




-- 
NEW GERMAN FAX NUMBER!!!

Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl. Phys. (Germany)

Centre of Excellence for Invasion Biology
Natural Sciences Building
Office Suite 2039
Stellenbosch University
Main Campus, Merriman Avenue
Stellenbosch
South Africa

Cell:   +27 - (0)83 9479 042
Fax:+27 - (0)86 516 2782
Fax:+49 - (0)321 2125 2244
email:  rai...@krugs.de

Skype:  RMkrug
Google: r.m.k...@gmail.com

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R Output and ArcGIS

[Corey Sparks]

Yes, R thinks the coordinates are characters, that needs to change.  Also,
alternatively you could use the write .dbf function in the foreign()
library, ArcGis likes dbf files (just no long names)
Corey


-
Corey Sparks, PhD
Assistant Professor
Department of Demography and Organization Studies
University of Texas at San Antonio
501 West Durango Blvd
Monterey Building 2.270C
San Antonio, TX 78207
210-458-3166
corey.sparks 'at' utsa.edu
https://rowdyspace.utsa.edu/users/ozd504/www/index.htm
-- 
View this message in context: 
http://n4.nabble.com/R-Output-and-ArcGIS-tp1289606p1290310.html
Sent from the R help mailing list archive at Nabble.com.

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R Output and ArcGIS

[Steve Murray]

Dear all,

Just to let you know that thanks to your help, I've managed to solve it.

For future reference, if anyone's interested (!), if you're having problems 
reading R-generated data from a Mac, into ArcMap on a PC, then ensure that 
you're using eol=\r\n in the write.table command and that you don't have 
factor or character data when they're really meant to be numeric! To overcome 
the latter, I did:

mrunoff$Longitude - as.numeric(levels(mrunoff$Longitude))[mrunoff$Longitude]

Hope this is of use to someone, somewhere, someday!

Thanks again for your advice,

Steve

  
_
Got a cool Hotmail story? Tell us now

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

[R] R Output and ArcGIS

[Steve Murray]

Dear all,

I've been using R on a Mac to process some data for export to ArcMap GIS (which 
only runs on Windows). ArcMap seems to require tab-delimited data (my data are 
in 3 columns), so I've been using the sep=\t argument. However, this resulted 
in strange end-of-line characters when displayed on a PC. I looked in the 
write.table help file to find that eol=\r\n can be used to get around this 
problem, and it does indeed prevent these unwanted characters from appearing.

However, the data still aren't properly recognised by ArcMap when created on a 
Mac (the exact same code works fine from a PC). In ArcMap, when I select 
'Display XY Data', the X (Longitude) and Y (Latitude) columns aren't available 
to select. It's as if Arc isn't correctly interpreting the output from R - this 
is despite me using col.names=TRUE in the write.table command.

Any light shed on this will be very gratefully received.

Many thanks for your help,

Steve

  
_
We want to hear all your funny, exciting and crazy Hotmail stories. Tell us now

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R Output and ArcGIS

[milton ruser]

Hi Steve,

As I have no problem with this because I run windows, I prefere to use .txt
files.
But may be on your case you install xlsReadWrite (or WriteRead), because
.xls file works fine for ArcGis.

Remember not use complex (like having dots) or large names because some
times you get error on ArcGis.

Good luck,

milton

On Mon, Jan 25, 2010 at 12:54 PM, Steve Murray smurray...@hotmail.comwrote:


 Dear all,

 I've been using R on a Mac to process some data for export to ArcMap GIS
 (which only runs on Windows). ArcMap seems to require tab-delimited data (my
 data are in 3 columns), so I've been using the sep=\t argument. However,
 this resulted in strange end-of-line characters when displayed on a PC. I
 looked in the write.table help file to find that eol=\r\n can be used to
 get around this problem, and it does indeed prevent these unwanted
 characters from appearing.

 However, the data still aren't properly recognised by ArcMap when created
 on a Mac (the exact same code works fine from a PC). In ArcMap, when I
 select 'Display XY Data', the X (Longitude) and Y (Latitude) columns aren't
 available to select. It's as if Arc isn't correctly interpreting the output
 from R - this is despite me using col.names=TRUE in the write.table command.

 Any light shed on this will be very gratefully received.

 Many thanks for your help,

 Steve


 _
 We want to hear all your funny, exciting and crazy Hotmail stories. Tell us
 now

 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide
 http://www.R-project.org/posting-guide.htmlhttp://www.r-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.


[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R Output and ArcGIS

[Michael Denslow]

Hi Steve,

On Mon, Jan 25, 2010 at 12:54 PM, Steve Murray smurray...@hotmail.com wrote:

 Dear all,

 I've been using R on a Mac to process some data for export to ArcMap GIS 
 (which only runs on Windows). ArcMap seems to require tab-delimited data (my 
 data are in 3 columns), so I've been using the sep=\t argument. However, 
 this resulted in strange end-of-line characters when displayed on a PC. I 
 looked in the write.table help file to find that eol=\r\n can be used to 
 get around this problem, and it does indeed prevent these unwanted characters 
 from appearing.

How did you look at the output? in Excel?

 However, the data still aren't properly recognised by ArcMap when created on 
 a Mac (the exact same code works fine from a PC). In ArcMap, when I select 
 'Display XY Data', the X (Longitude) and Y (Latitude) columns aren't 
 available to select. It's as if Arc isn't correctly interpreting the output 
 from R - this is despite me using col.names=TRUE in the write.table command.

I usually use col.names=NA, when I am writing a file to be read by a
spreadsheet. This is also documented in ?write.table.

As Milton pointed out you should also make sure that you are careful
with your column names since R and ArcMap have different rules.

Posting the results of str(YourData) might shed some light as well.

Hope this helps,
Michael



 Any light shed on this will be very gratefully received.

 Many thanks for your help,

 Steve


 _
 We want to hear all your funny, exciting and crazy Hotmail stories. Tell us 
 now

 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.




-- 
Michael Denslow

I.W. Carpenter Jr. Herbarium [BOON]
Department of Biology
Appalachian State University
Boone, North Carolina U.S.A.
-- AND --
Communications Manager
Southeast Regional Network of Expertise and Collections
sernec.org

36.214177, -81.681480 +/- 3103 meters

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R Output and ArcGIS

[Paul Hiemstra]

Steve Murray wrote:

Dear all,

I've been using R on a Mac to process some data for export to ArcMap GIS (which only runs on 
Windows). ArcMap seems to require tab-delimited data (my data are in 3 columns), so I've been using 
the sep=\t argument. However, this resulted in strange end-of-line characters when 
displayed on a PC. I looked in the write.table help file to find that eol=\r\n can be 
used to get around this problem, and it does indeed prevent these unwanted characters from 
appearing.

However, the data still aren't properly recognised by ArcMap when created on a 
Mac (the exact same code works fine from a PC). In ArcMap, when I select 
'Display XY Data', the X (Longitude) and Y (Latitude) columns aren't available 
to select. It's as if Arc isn't correctly interpreting the output from R - this 
is despite me using col.names=TRUE in the write.table command.

Any light shed on this will be very gratefully received.

Many thanks for your help,

Steve

 		 	   		  
_

We want to hear all your funny, exciting and crazy Hotmail stories. Tell us now

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
  

Hi,

In addition to the other people. If you convert your data in R to one of 
the spatial classes (see the sp-pacakge) you can use the rgdal-package 
to dump these objects to e.g. a shapefile. This can be read by ArcGIS.


As a note, there is a special mailing list for geographic data and R, 
r-sig-geo, which might be a better place to ask these kind of specific 
questions.


good luck!

Paul

--
Drs. Paul Hiemstra
Department of Physical Geography
Faculty of Geosciences
University of Utrecht
Heidelberglaan 2
P.O. Box 80.115
3508 TC Utrecht
Phone:  +3130 274 3113 Mon-Tue
Phone:  +3130 253 5773 Wed-Fri
http://intamap.geo.uu.nl/~paul

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R output

[David Winsemius]

The two other responses I saw suggested using write.table, which is  
fine if the object is a data.frame, but maybe not so great if the  
object comes from summary on a model  or aov. My memory from years  
gone by of Excel's handling of material that had been copied to the  
clipboard from webpages, is that it maintains the formatting quite  
well. You might want to look at xtable, which has an html method for  
the print function for xtable. I cannot test it in Excel but it gives  
formatted output for use in OpenOffice.org.


install package xtable and then:
library(xtable)
?xtable
# and work through the examples on the help page.

--
David.
On Dec 14, 2009, at 10:09 AM, Manuel Jesús López Rodríguez wrote:


Dear all,
I would like to ask you if exists some way of having the results of  
an R instruction (for instance, summary) in a table to copy it  
directly in Excel.

Thank you very much in advance.
Best wishes!


David Winsemius, MD
Heritage Laboratories
West Hartford, CT

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R output

[Manuel Jesús López Rodríguez]

Thank you very much for your answers! They are very helpful!
Best wishes!

Manuel

El 15/12/2009, a las 15:24, David Winsemius escribió:

 The two other responses I saw suggested using write.table, which is fine if 
 the object is a data.frame, but maybe not so great if the object comes from 
 summary on a model  or aov. My memory from years gone by of Excel's handling 
 of material that had been copied to the clipboard from webpages, is that it 
 maintains the formatting quite well. You might want to look at xtable, which 
 has an html method for the print function for xtable. I cannot test it in 
 Excel but it gives formatted output for use in OpenOffice.org.
 
 install package xtable and then:
 library(xtable)
 ?xtable
 # and work through the examples on the help page.
 
 -- 
 David.
 On Dec 14, 2009, at 10:09 AM, Manuel Jesús López Rodríguez wrote:
 
 Dear all,
 I would like to ask you if exists some way of having the results of an R 
 instruction (for instance, summary) in a table to copy it directly in 
 Excel.
 Thank you very much in advance.
 Best wishes!
 
 David Winsemius, MD
 Heritage Laboratories
 West Hartford, CT
 

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

[R] R output

[Manuel Jesús López Rodríguez]

Dear all,
I would like to ask you if exists some way of having the results of an R 
instruction (for instance, summary) in a table to copy it directly in Excel.
Thank you very much in advance.
Best wishes!

Manuel
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R output

[stephen sefick]

?write.table()

2009/12/14 Manuel Jesús López Rodríguez mjlr1...@yahoo.es:
 Dear all,
 I would like to ask you if exists some way of having the results of an R 
 instruction (for instance, summary) in a table to copy it directly in Excel.
 Thank you very much in advance.
 Best wishes!

 Manuel
 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.




-- 
Stephen Sefick

Let's not spend our time and resources thinking about things that are
so little or so large that all they really do for us is puff us up and
make us feel like gods.  We are mammals, and have not exhausted the
annoying little problems of being mammals.

-K. Mullis

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.