Re: [R] identify object that causes Error in loadNamespace(name) : there is no package called ‘R.utils’
Dear Duncan, On Wed, Apr 24, 2013 at 11:04 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: What I've done sometimes in debugging is to change that error to a warning in the getNamespace() function, and add some tracing code to the serialization code to print the names of objects as they are loaded. (This goes in ReadItem in src/main/serialize.c.) I wouldn't expect Liviu to make those changes, but perhaps a verbose option could be added to load(), so that it could be available to users. I have added this in R-devel. The format of the printed output may well change before this is ever released, but it should be enough to identify the bad item already. You'll need a build of R-devel from r62658 or newer to see this. Then load(/tmp/a.rda, verbose=TRUE) will print the names of objects as they are read (the names are read after the attributes and before the value). If you want to see reams of mostly useless information, you can try verbose=n (for some number n=2 or more); this prints names and component numbers to a greater depth. Thank you for adding this in R. I will likely test this feature when it gets released. Best regards, Liviu __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] identify object that causes Error in loadNamespace(name) : there is no package called ‘R.utils’
On 13-04-25 3:46 AM, Liviu Andronic wrote: Dear Duncan, On Wed, Apr 24, 2013 at 11:04 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: What I've done sometimes in debugging is to change that error to a warning in the getNamespace() function, and add some tracing code to the serialization code to print the names of objects as they are loaded. (This goes in ReadItem in src/main/serialize.c.) I wouldn't expect Liviu to make those changes, but perhaps a verbose option could be added to load(), so that it could be available to users. I have added this in R-devel. The format of the printed output may well change before this is ever released, but it should be enough to identify the bad item already. You'll need a build of R-devel from r62658 or newer to see this. Then load(/tmp/a.rda, verbose=TRUE) will print the names of objects as they are read (the names are read after the attributes and before the value). If you want to see reams of mostly useless information, you can try verbose=n (for some number n=2 or more); this prints names and component numbers to a greater depth. Thank you for adding this in R. I will likely test this feature when it gets released. That will be about a year from now... Duncan Murdoch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] identify object that causes Error in loadNamespace(name) : there is no package called ‘R.utils’
Dear all, I've bumped into the: Error in loadNamespace(name) : there is no package called ‘R.utils’ error. I've already read a bit on this ( http://www.cybaea.net/Blogs/Data/A-warning-on-the-R-save-format.html ) but I have a follow-up question. Given a workspace that automatically loads a package that I don't really need/want (e.g. ‘R.utils’), how do I identify which object requires this package to load? I would like to avoid loading ‘R.utils’ every time I open an R session. Regards, Liviu sessionInfo() R version 2.15.3 (2013-03-01) Platform: i686-pc-linux-gnu (32-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] datasets grDevices splines graphics utils stats methods base other attached packages: [1] R.utils_1.23.2R.oo_1.13.0 R.methodsS3_1.4.2 tables_0.7.57 reshape2_1.2.2 [6] car_2.0-15nnet_7.3-6MASS_7.3-23 Hmisc_3.10-1 survival_2.37-2 [11] foreign_0.8-53 loaded via a namespace (and not attached): [1] cluster_1.14.3 grid_2.15.3 lattice_0.20-13 plyr_1.8 rstudio_0.97.312 [6] stringr_0.6.2tools_2.15.3 -- Do you know how to read? http://www.alienetworks.com/srtest.cfm http://goodies.xfce.org/projects/applications/xfce4-dict#speed-reader Do you know how to write? http://garbl.home.comcast.net/~garbl/stylemanual/e.htm#e-mail __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] identify object that causes Error in loadNamespace(name) : there is no package called ‘R.utils’
On 13-04-24 5:46 AM, Liviu Andronic wrote: Dear all, I've bumped into the: Error in loadNamespace(name) : there is no package called ‘R.utils’ error. I've already read a bit on this ( http://www.cybaea.net/Blogs/Data/A-warning-on-the-R-save-format.html ) but I have a follow-up question. Given a workspace that automatically loads a package that I don't really need/want (e.g. ‘R.utils’), how do I identify which object requires this package to load? I would like to avoid loading ‘R.utils’ every time I open an R session. That's not easy, because the code in R that triggers that error has no idea of the name of the object it is loading. You could try a binary search to find out, but it will be tedious: 1. Install R.utils. 2. Load the workspace successfully. 3. Delete half the objects, and save it. 4. Uninstall R.utils, and see if you can load the workspace. At this point you'll know if there's an object needing R.utils still left or not, and you can repeat the steps until you find a single object that causes the problem. (But it might not be the only one, so deleting it from the original workspace might not solve your problem.) A better approach is to *never* save and load workspaces unless you know exactly what is in them. Always reply no to the question about saving your workspace (or set that as the default). If you accidentally end up with a workspace being loaded, delete it. Duncan Murdoch Regards, Liviu sessionInfo() R version 2.15.3 (2013-03-01) Platform: i686-pc-linux-gnu (32-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] datasets grDevices splines graphics utils stats methods base other attached packages: [1] R.utils_1.23.2R.oo_1.13.0 R.methodsS3_1.4.2 tables_0.7.57 reshape2_1.2.2 [6] car_2.0-15nnet_7.3-6MASS_7.3-23 Hmisc_3.10-1 survival_2.37-2 [11] foreign_0.8-53 loaded via a namespace (and not attached): [1] cluster_1.14.3 grid_2.15.3 lattice_0.20-13 plyr_1.8 rstudio_0.97.312 [6] stringr_0.6.2tools_2.15.3 __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] identify object that causes Error in loadNamespace(name) : there is no package called ‘R.utils’
On 04/24/2013 06:03 AM, Duncan Murdoch wrote: On 13-04-24 5:46 AM, Liviu Andronic wrote: Dear all, I've bumped into the: Error in loadNamespace(name) : there is no package called ‘R.utils’ error. I've already read a bit on this ( http://www.cybaea.net/Blogs/Data/A-warning-on-the-R-save-format.html ) but I have a follow-up question. Given a workspace that automatically loads a package that I don't really need/want (e.g. ‘R.utils’), how do I identify which object requires this package to load? I would like to avoid loading ‘R.utils’ every time I open an R session. That's not easy, because the code in R that triggers that error has no idea of the name of the object it is loading. Maybe traceback() can provide some hints? I did, more or less arbitrarily library(rms) a = list(fun=ie.setup) save(a, file=/tmp/a.rda) remove.packages(rms) and then in a new session load(/tmp/a.rda) Error in loadNamespace(name) : there is no package called 'rms' traceback() 7: stop(e) 6: value[[3L]](cond) 5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 4: tryCatchList(expr, classes, parentenv, handlers) 3: tryCatch(loadNamespace(name), error = function(e) stop(e)) 2: getNamespace(c(rms, 3.6-3)) 1: load(/tmp/a.rda) with the line numbered 2 giving me the necessary hint. Martin You could try a binary search to find out, but it will be tedious: 1. Install R.utils. 2. Load the workspace successfully. 3. Delete half the objects, and save it. 4. Uninstall R.utils, and see if you can load the workspace. At this point you'll know if there's an object needing R.utils still left or not, and you can repeat the steps until you find a single object that causes the problem. (But it might not be the only one, so deleting it from the original workspace might not solve your problem.) A better approach is to *never* save and load workspaces unless you know exactly what is in them. Always reply no to the question about saving your workspace (or set that as the default). If you accidentally end up with a workspace being loaded, delete it. Duncan Murdoch Regards, Liviu sessionInfo() R version 2.15.3 (2013-03-01) Platform: i686-pc-linux-gnu (32-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] datasets grDevices splines graphics utils stats methods base other attached packages: [1] R.utils_1.23.2R.oo_1.13.0 R.methodsS3_1.4.2 tables_0.7.57 reshape2_1.2.2 [6] car_2.0-15nnet_7.3-6MASS_7.3-23 Hmisc_3.10-1 survival_2.37-2 [11] foreign_0.8-53 loaded via a namespace (and not attached): [1] cluster_1.14.3 grid_2.15.3 lattice_0.20-13 plyr_1.8 rstudio_0.97.312 [6] stringr_0.6.2tools_2.15.3 __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793 __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] identify object that causes Error in loadNamespace(name) : there is no package called ‘R.utils’
On 13-04-24 10:12 AM, Martin Morgan wrote: On 04/24/2013 06:03 AM, Duncan Murdoch wrote: On 13-04-24 5:46 AM, Liviu Andronic wrote: Dear all, I've bumped into the: Error in loadNamespace(name) : there is no package called ‘R.utils’ error. I've already read a bit on this ( http://www.cybaea.net/Blogs/Data/A-warning-on-the-R-save-format.html ) but I have a follow-up question. Given a workspace that automatically loads a package that I don't really need/want (e.g. ‘R.utils’), how do I identify which object requires this package to load? I would like to avoid loading ‘R.utils’ every time I open an R session. That's not easy, because the code in R that triggers that error has no idea of the name of the object it is loading. Maybe traceback() can provide some hints? I did, more or less arbitrarily library(rms) a = list(fun=ie.setup) save(a, file=/tmp/a.rda) remove.packages(rms) and then in a new session load(/tmp/a.rda) Error in loadNamespace(name) : there is no package called 'rms' traceback() 7: stop(e) 6: value[[3L]](cond) 5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 4: tryCatchList(expr, classes, parentenv, handlers) 3: tryCatch(loadNamespace(name), error = function(e) stop(e)) 2: getNamespace(c(rms, 3.6-3)) 1: load(/tmp/a.rda) with the line numbered 2 giving me the necessary hint. That tells you that some object needs the rms package, but I don't see how you would know it is a that is the problem. We already knew that rms was needed from the error message. What I've done sometimes in debugging is to change that error to a warning in the getNamespace() function, and add some tracing code to the serialization code to print the names of objects as they are loaded. (This goes in ReadItem in src/main/serialize.c.) I wouldn't expect Liviu to make those changes, but perhaps a verbose option could be added to load(), so that it could be available to users. Duncan Murdoch Martin You could try a binary search to find out, but it will be tedious: 1. Install R.utils. 2. Load the workspace successfully. 3. Delete half the objects, and save it. 4. Uninstall R.utils, and see if you can load the workspace. At this point you'll know if there's an object needing R.utils still left or not, and you can repeat the steps until you find a single object that causes the problem. (But it might not be the only one, so deleting it from the original workspace might not solve your problem.) A better approach is to *never* save and load workspaces unless you know exactly what is in them. Always reply no to the question about saving your workspace (or set that as the default). If you accidentally end up with a workspace being loaded, delete it. Duncan Murdoch Regards, Liviu sessionInfo() R version 2.15.3 (2013-03-01) Platform: i686-pc-linux-gnu (32-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] datasets grDevices splines graphics utils stats methods base other attached packages: [1] R.utils_1.23.2R.oo_1.13.0 R.methodsS3_1.4.2 tables_0.7.57 reshape2_1.2.2 [6] car_2.0-15nnet_7.3-6MASS_7.3-23 Hmisc_3.10-1 survival_2.37-2 [11] foreign_0.8-53 loaded via a namespace (and not attached): [1] cluster_1.14.3 grid_2.15.3 lattice_0.20-13 plyr_1.8 rstudio_0.97.312 [6] stringr_0.6.2tools_2.15.3 __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] identify object that causes Error in loadNamespace(name) : there is no package called ‘R.utils’
Dear Duncan, On Wed, Apr 24, 2013 at 4:57 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: What I've done sometimes in debugging is to change that error to a warning in the getNamespace() function, and add some tracing code to the serialization code to print the names of objects as they are loaded. (This goes in ReadItem in src/main/serialize.c.) I wouldn't expect Liviu to make those changes, but perhaps a verbose option could be added to load(), so that it could be available to users. That would be useful, indeed. As it stands save()/load() workspaces in R seems very fragile and could easily trip users when working on multiple machines or sharing their workspace with a colleague. In such cases it is important to be able to quickly pinpoint the offending object. Regards, Liviu __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] identify object that causes Error in loadNamespace(name) : there is no package called ‘R.utils’
Dear Duncan, On Wed, Apr 24, 2013 at 3:03 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: A better approach is to *never* save and load workspaces unless you know exactly what is in them. Always reply no to the question about saving your workspace (or set that as the default). If you accidentally end up with a workspace being loaded, delete it. I must admit that I'm a bit surprised by this. I was always under the impression that saving/restoring workspaces was the proper workflow in R. If you use R interactively (e.g., not by running scripts), how else would you store your data, intermediary results, etc., while working on a project? Am I missing something? Regards, Liviu __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] identify object that causes Error in loadNamespace(name) : there is no package called ‘R.utils’
On Wed, Apr 24, 2013 at 4:08 PM, Liviu Andronic landronim...@gmail.com wrote: Dear Duncan, On Wed, Apr 24, 2013 at 3:03 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: A better approach is to *never* save and load workspaces unless you know exactly what is in them. Always reply no to the question about saving your workspace (or set that as the default). If you accidentally end up with a workspace being loaded, delete it. I must admit that I'm a bit surprised by this. I was always under the impression that saving/restoring workspaces was the proper workflow in R. If you use R interactively (e.g., not by running scripts), how else would you store your data, intermediary results, etc., while working on a project? Am I missing something? I save the objects themselves (rather than the whole workspace) using saveRDS() and readRDS() -- which I *think* are considered better practice than save() and load() because they don't force names on you. Cheers, MW __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] identify object that causes Error in loadNamespace(name) : there is no package called ‘R.utils’
I must admit that I'm a bit surprised by this. I was always under the impression that saving/restoring workspaces was the proper workflow in R. If you use R interactively (e.g., not by running scripts), how else would you store your data, intermediary results, etc., while working on a project? Am I missing something? You don't _store_ intermediate results - you recreate them from your script. If they are time consuming, then you can use readRDS/saveRDS to cache the results. If you don't start with a clean workspace frequently, it's difficult to tell whether or not your code is reproducible. Hadley -- Chief Scientist, RStudio http://had.co.nz/ __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] identify object that causes Error in loadNamespace(name) : there is no package called ‘R.utils’
-Original Message- From: h.wick...@gmail.com Sent: Wed, 24 Apr 2013 10:48:01 -0500 To: landronim...@gmail.com Subject: Re: [R] identify object that causes Error in loadNamespace(name) : there is no package called ‘R.utils’ I must admit that I'm a bit surprised by this. I was always under the impression that saving/restoring workspaces was the proper workflow in R. If you use R interactively (e.g., not by running scripts), how else would you store your data, intermediary results, etc., while working on a project? Am I missing something? You don't _store_ intermediate results - you recreate them from your script. If they are time consuming, then you can use readRDS/saveRDS to cache the results. If you don't start with a clean workspace frequently, it's difficult to tell whether or not your code is reproducible. Hadley -- Chief Scientist, RStudio http://had.co.nz/ Not to mention http://www.mail-archive.com/r-help@r-project.org/msg196997.html John Kane Kingston ON Canada GET FREE SMILEYS FOR YOUR IM EMAIL - Learn more at http://www.inbox.com/smileys Works with AIM®, MSN® Messenger, Yahoo!® Messenger, ICQ®, Google Talk™ and most webmails __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] identify object that causes Error in loadNamespace(name) : there is no package called ‘R.utils’
On 13-04-24 11:08 AM, Liviu Andronic wrote: Dear Duncan, On Wed, Apr 24, 2013 at 3:03 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: A better approach is to *never* save and load workspaces unless you know exactly what is in them. Always reply no to the question about saving your workspace (or set that as the default). If you accidentally end up with a workspace being loaded, delete it. I must admit that I'm a bit surprised by this. I was always under the impression that saving/restoring workspaces was the proper workflow in R. If you use R interactively (e.g., not by running scripts), how else would you store your data, intermediary results, etc., while working on a project? Am I missing something? I think Michael and Hadley have already given good advice. I'll just add one thing: If you use R interactively, you should still be running scripts, just running them within an interactive session. That way you have a record of what you did, and can back up (by starting over and running everything up to a known good spot) to make corrections. Duncan Murdoch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] identify object that causes Error in loadNamespace(name) : there is no package called ‘R.utils’
On 13-04-24 10:57 AM, Duncan Murdoch wrote: On 13-04-24 10:12 AM, Martin Morgan wrote: On 04/24/2013 06:03 AM, Duncan Murdoch wrote: On 13-04-24 5:46 AM, Liviu Andronic wrote: Dear all, I've bumped into the: Error in loadNamespace(name) : there is no package called ‘R.utils’ error. I've already read a bit on this ( http://www.cybaea.net/Blogs/Data/A-warning-on-the-R-save-format.html ) but I have a follow-up question. Given a workspace that automatically loads a package that I don't really need/want (e.g. ‘R.utils’), how do I identify which object requires this package to load? I would like to avoid loading ‘R.utils’ every time I open an R session. That's not easy, because the code in R that triggers that error has no idea of the name of the object it is loading. Maybe traceback() can provide some hints? I did, more or less arbitrarily library(rms) a = list(fun=ie.setup) save(a, file=/tmp/a.rda) remove.packages(rms) and then in a new session load(/tmp/a.rda) Error in loadNamespace(name) : there is no package called 'rms' traceback() 7: stop(e) 6: value[[3L]](cond) 5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 4: tryCatchList(expr, classes, parentenv, handlers) 3: tryCatch(loadNamespace(name), error = function(e) stop(e)) 2: getNamespace(c(rms, 3.6-3)) 1: load(/tmp/a.rda) with the line numbered 2 giving me the necessary hint. That tells you that some object needs the rms package, but I don't see how you would know it is a that is the problem. We already knew that rms was needed from the error message. What I've done sometimes in debugging is to change that error to a warning in the getNamespace() function, and add some tracing code to the serialization code to print the names of objects as they are loaded. (This goes in ReadItem in src/main/serialize.c.) I wouldn't expect Liviu to make those changes, but perhaps a verbose option could be added to load(), so that it could be available to users. I have added this in R-devel. The format of the printed output may well change before this is ever released, but it should be enough to identify the bad item already. You'll need a build of R-devel from r62658 or newer to see this. Then load(/tmp/a.rda, verbose=TRUE) will print the names of objects as they are read (the names are read after the attributes and before the value). If you want to see reams of mostly useless information, you can try verbose=n (for some number n=2 or more); this prints names and component numbers to a greater depth. Duncan Murdoch Duncan Murdoch Martin You could try a binary search to find out, but it will be tedious: 1. Install R.utils. 2. Load the workspace successfully. 3. Delete half the objects, and save it. 4. Uninstall R.utils, and see if you can load the workspace. At this point you'll know if there's an object needing R.utils still left or not, and you can repeat the steps until you find a single object that causes the problem. (But it might not be the only one, so deleting it from the original workspace might not solve your problem.) A better approach is to *never* save and load workspaces unless you know exactly what is in them. Always reply no to the question about saving your workspace (or set that as the default). If you accidentally end up with a workspace being loaded, delete it. Duncan Murdoch Regards, Liviu sessionInfo() R version 2.15.3 (2013-03-01) Platform: i686-pc-linux-gnu (32-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] datasets grDevices splines graphics utils stats methods base other attached packages: [1] R.utils_1.23.2R.oo_1.13.0 R.methodsS3_1.4.2 tables_0.7.57 reshape2_1.2.2 [6] car_2.0-15nnet_7.3-6MASS_7.3-23 Hmisc_3.10-1 survival_2.37-2 [11] foreign_0.8-53 loaded via a namespace (and not attached): [1] cluster_1.14.3 grid_2.15.3 lattice_0.20-13 plyr_1.8 rstudio_0.97.312 [6] stringr_0.6.2tools_2.15.3 __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.