Re: [R] hdf5 package segfault when processing large data

Hi Budi and Bill, As a workaround, you could try setting your stack limit to a larger limit (ulimit -s). I'll change that to a heap allocation. Thanks, Marcus William Dunlap wrote: This is probably due to the code in hdf5.c allocating a huge matrix, buf, on the stack with 883

[R] hdf5 package segfault when processing large data

Hi there, I am currently working on something that uses hdf5 library. I think hdf5 is a great data format, I've used it somewhat extensively in python via PyTables. I was looking for something similar to that in R. The closest I can get is this library: hdf5. While it does not work the same way

Re: [R] hdf5 package segfault when processing large data

-Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Budi Mulyono Sent: Monday, August 24, 2009 3:38 AM To: r-help@r-project.org Subject: [R] hdf5 package segfault when processing large data Hi there, I am currently working