(Ted Harding) wrote:
Hi Folks,
I'm contemplating using locator() to digitise external
graphics. To set context, I would be using X11 display
on Linux.
Hi, Ted!
Beside searching for specialized packages, I would suggest you to try my
package RImgViewer which uses Gtk2 library to import and
Thanks a lot
cheers
Eryk
Marc Schwartz wrote:
For a me too post, I agree with Andy's recommendation, which in turn is
supported by How to Report Statistics in Medicine by Lang and Secic,
ACP, 1997. There is an example table (8.2) on page 133.
HTH,
Marc Schwartz
On Sun, 2005-03-20 at 15:44 -0500,
Hi,
Splus allows pasting a graphics object into the plotting window, which makes it
possible to do what you describe below.
Now I use R which doesn't seem to allow pasting the picture into the graphics
window, so I copy the graph onto a transparency
sheet, and stick it onto my screen using
Roger Levy [EMAIL PROTECTED] writes:
Hi,
In the exactRankTest package, I've become aware that you can get
anomalous p-values (i.e., above 1) from the wilcox.exact method, as in:
wilcox.exact(c(-0.6,0.8,-0.5))
Exact Wilcoxon signed rank test
data: c(-0.6, 0.8, -0.5)
Hello,
I've got a problem to find an effective calculation.
There are x,y data and I want to build classes for
the x values. For each class then I want to calculate
the median, N%-Quantiles, outliers, etc. for the
corresponding y values and store all in a vector or matrix.
Is there a direct
On 21-Mar-05 Sixten Borg wrote:
Hi,
Splus allows pasting a graphics object into the plotting
window, which makes it possible to do what you describe below.
Now I use R which doesn't seem to allow pasting the picture
into the graphics window, so I copy the graph onto a transparency
sheet,
On 21-Mar-05 M.Kondrin wrote:
(Ted Harding) wrote:
Hi Folks,
I'm contemplating using locator() to digitise external
graphics. To set context, I would be using X11 display
on Linux.
Hi, Ted!
Beside searching for specialized packages, I would suggest
you to try my package RImgViewer
Hello R-Helpers..
I am still new in R and I have the following question..
I am applying the function chull on a 2D dataset and have the convex hull
nicely
calculated and plotted.
Do you know if there is a way to extract the coordinates of the line created
from the connection of the chull data
Dear Rgurus,
To my knowledge the best way to visualize the distribution of a discrete
variable X is
plot(table(X))
The problem which I have is the following. I have to discrete variables
X and Y which distribution I would like to compare. To overlay the
distribution of Y with lines(table(Y))
you could try something like this:
dat - data.frame(x=rep(1:4, each=25), y=rnorm(100))
tapply(dat$y, dat$x, summary)
I hope it helps.
Best,
Dimitris
Dimitris Rizopoulos
Ph.D. Student
Biostatistical Centre
School of Public Health
Catholic University of Leuven
Address: Kapucijnenvoer 35,
Hello,
I'm new to the list, hello everybody! :-)
I have a question. I looked carefully through the documentation and
googled, and found no answer, so I'm posting it here.
Let's say I have a data frame with lots of columns (about 300), which
are factors. Many columns-factors have only one
first:I'd like to have the choice between breaking out a repeat loop or
continue it
then: i'd would like my code after the end of my repeat loop not to be read
unless I type 2 (to continue executing the content of my repeat loop) THAT'S
THE
PROBLEM
Is there any way to go straight out of the
try this:
dat - data.frame(y=rnorm(100), f1=sample(c(Yes, No), 100, TRUE),
f2=rep(Yes, 100), f3=rep(No, 100))
#
dat[!sapply(dat, function(x) all(x==x[1]))]
I hope it helps.
Best,
Dimitris
Dimitris Rizopoulos
Ph.D. Student
Biostatistical Centre
School of Public Health
Catholic
Guillaume STORCHI wrote:
first:I'd like to have the choice between breaking out a repeat loop or
continue it
then: i'd would like my code after the end of my repeat loop not to be read
unless I type 2 (to continue executing the content of my repeat loop) THAT'S
THE
PROBLEM
Is there any way to
How is it possible to split a data.frame in order to get classes with
variable size.
actually I'd like to get classes of data with classe size (cs) so that
cs becomes bigger with an other increasing value.
Guillaume Storchi
__
R-help@stat.math.ethz.ch
first:I'd like to have the choice between breaking out a repeat loop or
continue it
then: i'd would like my code after the end of my repeat loop not to be read
unless I type 2 (to continue executing the content of my repeat loop) THAT'S
THE PROBLEM
Is there any way to go straight out of
I have a problem about how to count missing variables in dataset.
I have a question for my customer. They are must choice one of answer
for example: A, B, C, D and E.
Now, I have dataset which is the result from my question, for instance:
x1 x2 x3 x4 x5
A A A B A
C A A A A
B B A B
In postscript graphs (pointsize = 10, different sizes in graph adjusted via
cex) I would like to use different font sizes but get the following warning
message:
Warning messages:
1: X11 used font size 8 when 9 was requested
2: X11 used font size 8 when 7 was requested
3: X11 used font size 8
R-help,
I wish to remove the message at the end of a session save workspace
image? .
By googling I found no answer .
Thanks in advance
I run on Windows XP
version
_
platform i386-pc-mingw32
arch i386
os mingw32
system i386, mingw32
Something like:
sum(sapply(dat, function(x) ! x %in% c(A, B, C)))
probably would work.
HTH,
Andy
From: Jan Sabee
I have a problem about how to count missing variables in dataset.
I have a question for my customer. They are must choice one of answer
for example: A, B, C, D and E.
Now, I
On Mon, 21 Mar 2005 12:07:16 +0100 Jan Sabee wrote:
I have a problem about how to count missing variables in dataset.
I have a question for my customer. They are must choice one of answer
for example: A, B, C, D and E.
Now, I have dataset which is the result from my question, for
instance:
Hello!
I would like to prepare training data to predict stock flow.
Prediction should be based on 2 inputs (date, stock currency)
input data :
date, stock_currency
1.1.2004, 1000.00
2.1.2004, 1120.00
5.1.2004, 1230.00
7.1.2004, 1150.00
10.1.2004,1040.00
11.1.2004, 999.00
1.2.2004, 945.00
Luis Ridao Cruz wrote:
R-help,
I wish to remove the message at the end of a session save workspace
image? .
By googling I found no answer .
Well, I found at once, e.g. look for a thread that started with
Quit asking me ...
and ended up in a nice quiz.
Uwe Ligges
Thanks in advance
I run on
Wolfgang Waser [EMAIL PROTECTED] writes:
In postscript graphs (pointsize = 10, different sizes in graph adjusted via
cex) I would like to use different font sizes but get the following warning
message:
Warning messages:
1: X11 used font size 8 when 9 was requested
2: X11 used font
from the command line q(no) is one way to do it
R-help,
I wish to remove the message at the end of a session save workspace
image? .
By googling I found no answer .
Thanks in advance
I run on Windows XP
version
_
platform i386-pc-mingw32
arch i386
os
On Fri, Mar 18, 2005 at 10:49:32PM +0100, Katharina Hoff wrote:
I am currently using Sweave for writing my bachelor thesis - and I have a
problem:
I am using a LaTeX style (report) with quite big margin spaces. The Sweave
generated LaTeX code floats into the margin - and it looks ugly. The
I'd suggest dotcharts, such as:
x1 - sample(letters[1:4], 100, replace=TRUE, prob=c(.2, .3, .4, .1))
x2 - sample(letters[1:4], 100, replace=TRUE, prob=c(.1, .4, .3, .2))
f1 - table(x1) / length(x1)
f2 - table(x2) / length(x2)
lev - factor(c(names(f1), names(f2)))
require(lattice)
dotplot(lev ~
If you are using Rgui, right-click on the icon you use to start R and click
on Properties, and add --no-save to the command that starts R.
Andy
From: Luis Ridao Cruz
R-help,
I wish to remove the message at the end of a session save workspace
image? .
By googling I found no answer .
Hello!
Could someone explain me the meaning of predict function parameter named type:
1. type=raw
2.type=class
Thank you.
[[alternative HTML version deleted]]
__
R-help@stat.math.ethz.ch mailing list
For what class? Those don't sound like they apply to _all_ predict methods.
Andy
From: Leonn Turner
Hello!
Could someone explain me the meaning of predict function
parameter named type:
1. type=raw
2.type=class
Thank you.
[[alternative HTML version deleted]]
On Sun, 2005-03-20 at 23:15 -0500, Bill Kranec wrote:
Hi,
I'm trying to do a box-whisker plot of two columns of a data frame, a
list of category names in one column vs. some numerical values in the
other. The plot itself works fine, but only a few points of the x-axis
( the category names
Dear all,
I have a script about iteration classification, like this below
data(iris)
N - 5
ir.tr.iter - vector('list',N)
ir.tr - vector('list',N)
for (j in 1:N) {
ir.tr[[j]] - rpart(Species ~., data=iris)
ir.tr.iter[j] - ir.tr[[j]]$frame
result - list(ir.tr=ir.tr,
Good day R-ers!
I was running the basic statistics for the exam that my students took
last week and something does not make sense with the stem() fucntion.
Here are two of my variables:
time, is time to complete the exam in minutes
exam.1, is the grade for the exam
In stem(), to the left of the
-Original Message-
From: Xiyan Lon
Dear all,
I have a script about iteration classification, like this below
data(iris)
N - 5
ir.tr.iter - vector('list',N)
ir.tr - vector('list',N)
for (j in 1:N) {
ir.tr[[j]] - rpart(Species ~., data=iris)
ir.tr.iter[j] -
Hi,
I have a problem:I need to use the maximum amount of memory in order to
perform a very tough analysis. By purchasing the suitable computer, what's
the maximum amount of memory obtainable in R?
Thanks,
Marco
__
Hi everyone,
I have a problem using rpart (R 2.0.1 under Unix)
Indeed, I have a large matrix (9271x7), my response variable is numeric and all
my predictor variables are categorical (from 3 to 8 levels).
Here is an example :
mydata[1:5,]
distance group3 group4 group5 group6
How can I do a simple k nearest neighbor regression in R? My training
data have 1 predictor and 1 outcome, both are numeric. I also need to
use FPE and SC to find the optimal model. I know there is knn() in
class package, but it's for knn classification. I also find a kknn
package. What function
ksmooth() will work for you, since you only have one predictor. There are
better choices, though, such as loess().
Andy
From: Menghui Chen
How can I do a simple k nearest neighbor regression in R? My training
data have 1 predictor and 1 outcome, both are numeric. I also need to
use FPE
On Mon, 21 Mar 2005 10:15:37 -0500, Liaw, Andy [EMAIL PROTECTED] wrote:
The `frame' component of an rpart object should already be a data frame.
You just need to make sure to assign them to components of ir.tr.iter, as,
e.g.,
ir.tr.iter[[j]] - ir.tr[[j]]$frame
BTW, why would you want
Witold Eryk Wolski W.E.Wolski at ncl.ac.uk writes:
:
: Dear Rgurus,
:
: To my knowledge the best way to visualize the distribution of a discrete
: variable X is
: plot(table(X))
:
: The problem which I have is the following. I have to discrete variables
: X and Y which distribution I would
José,
Notice that the values to the left of the | in your stem plot are
all even. Odd numbers are included in the same line.
Try
stem(time,scale=2)
The decimal point is 1 digit(s) to the right of the |
3 | 2
4 | 17
5 | 09
6 | 4667789
7 | 38
8 | 3
9 | 0335
10 |
Hi,
I have a problem:I need to use the maximum amount of memory in order to
perform a very tough analysis. By purchasing the suitable computer, what's
the maximum amount of memory obtainable in R?
Thanks,
Marco
__
On Mon, 21 Mar 2005, Brett Stansfield wrote:
Dear R
What does NaN mean?
Not a Number. It is the result of improper mathematical expressions such
as 0/0, Inf/Inf, logarithms of negative numbers, and so on. Might you
have some zeros in `para' giving -Inf logpara?
-thomas
I recently did
Hello,
I'm not sure i got your question right, but i think the whole point is
to find the equation of a line which passes by two points
See ?lm
Romain.
Le 21.03.2005 11:09, [EMAIL PROTECTED] a écrit :
Hello R-Helpers..
I am still new in R and I have the following question..
I am applying the
In regards to your plot question, you could use points() or lines():
a - sample(1:50,10)
b - sample(20:40,10)
plot(1:10,a,pch=20,col=red)
points(1:10,b,pch=20,col=blue)
#or
#lines(1:10,b,pch=20,col=blue,type=o)
-Original Message-
From: Mohammad Ehsanul Karim [mailto:[EMAIL PROTECTED]
AndyL == Liaw, Andy [EMAIL PROTECTED]
on Mon, 21 Mar 2005 08:14:20 -0500 writes:
AndyL I'd suggest dotcharts, such as:
AndyL x1 - sample(letters[1:4], 100, replace=TRUE, prob=c(.2, .3, .4, .1))
AndyL x2 - sample(letters[1:4], 100, replace=TRUE, prob=c(.1, .4, .3, .2))
AndyL
?chull
states:
Value:
An integer vector giving the indices of the points lying on the
convex hull, in clockwise order.
therefore (see Example in ?chull) you have the end points of each line
segment from which you can compute the equation of each line segment.
Since the precision
Apologies for cross posting
-
Salford Systems Data Mining 2005
New York, March 28-30, 2005
Focusing on the Contributions of Data Mining to Solving Real World
Challenges
Dear useR again,
How can I read a dataset if lines in dataset did not have same
elements (have different lengths), For example:
12, 4, 16, 1, 1, 3, 1, 1, 15, 5, 1, 1, 14, 1, 1
22, 13, 5, 1, 1, 3, 1, 1, 15, 5, 1, 1, 14, 1, 1
34, 5, 11, 1, 1, 6, 1, 1, 5, 14,
Have you looked at sample and the various ways of subscripting
in, e.g., An Introduction to R [the upper left option after
help.start() in R 2.0.1]?
Beyond that, I'm very sorry, but I can't understand what you are
asking. If this does NOT answer your question, please read the
On 21 Mar 2005, at 4:42 pm, [EMAIL PROTECTED] wrote:
Hi,
I have a problem:I need to use the maximum amount of memory in order to
perform a very tough analysis. By purchasing the suitable computer,
what's
the maximum amount of memory obtainable in R?
Assuming that R is happy to use 64-bit memory
If the file is formatted as you've shown, you should be able to read it with
read.fwf().
Andy
From: Xiyan Lon
Dear useR again,
How can I read a dataset if lines in dataset did not have same
elements (have different lengths), For example:
12, 4, 16, 1, 1, 3, 1, 1, 15, 5, 1,
Romain Francois wrote:
Hello,
I'm not sure i got your question right, but i think the whole point is
to find the equation of a line which passes by two points
See ?lm
Or see a basic geometry book, where you will find a formula such as:
(x-x1)/(y-y1) = (x2-x1)/(y2-y1)
for the equation of a line
Xiyan Lon wrote:
Dear useR again,
How can I read a dataset if lines in dataset did not have same
elements (have different lengths), For example:
12, 4, 16, 1, 1, 3, 1, 1, 15, 5, 1, 1, 14, 1, 1
22, 13, 5, 1, 1, 3, 1, 1, 15, 5, 1, 1, 14, 1, 1
34, 5, 11, 1, 1, 6,
Without some sort of formatting or prior knowledge to indicate which fields
are present and which are missing, I don't see how such a file can be
properly read. With such formatting present, there are several ways. e.g.
See ?read.table, ?readLines, ?scan, ?connections, ...
-- Bert Gunter
The amount of memory you can access depends on many things, most of
which are not related to R. With a 64-bit processor and suitable OS
we've used R on a machines with 16GB of RAM (and accessed most of it).
Of course, the memory does get very expensive after a certain point
-roger
[EMAIL
Thomas Hopper wrote:
I'm starting to do a fair amount of DOE in my day job and need to
generate full- and fractional-factorial designs.
One of the things I'd like to do is generate all possible interaction
effects, given the main effects. I've been searching through the
documentation, packages
Tim Cutts [EMAIL PROTECTED] writes:
On 21 Mar 2005, at 4:42 pm, [EMAIL PROTECTED] wrote:
Hi,
I have a problem:I need to use the maximum amount of memory in order to
perform a very tough analysis. By purchasing the suitable computer,
what's
the maximum amount of memory obtainable in
Xiyan Lon xiyanlon at gmail.com writes:
:
: Dear useR again,
: How can I read a dataset if lines in dataset did not have same
: elements (have different lengths), For example:
:
: 12, 4, 16, 1, 1, 3, 1, 1, 15, 5, 1, 1, 14, 1, 1
: 22, 13, 5, 1, 1, 3, 1, 1, 15, 5, 1,
Hello
I'd like to try RSPython, but can't make it work.
I think I followed all the instructions, and made this shell script to
load python:
-
#!/bin/sh
export R_HOME=/usr/local/lib/R
export PYTHONPATH=$R_HOME/library/RSPython/Python:$R_HOME/library/RSPython/libs
On Mon, 21 Mar 2005, Tim Cutts wrote:
On 21 Mar 2005, at 4:42 pm, [EMAIL PROTECTED] wrote:
Hi,
I have a problem:I need to use the maximum amount of memory in order to
perform a very tough analysis. By purchasing the suitable computer, what's
the maximum amount of memory obtainable in R?
Assuming
[EMAIL PROTECTED] wrote:
Hi everyone,
I have a problem using rpart (R 2.0.1 under Unix)
Indeed, I have a large matrix (9271x7), my response variable is numeric and all
my predictor variables are categorical (from 3 to 8 levels).
Your problem is the number of levels. You get a similar number of
Hi,
I'm student from canada, and i'work in survival
analysis.I want to know if there is a hazard function
or cumulative hazard function in R or not, i know how
to program it, but it is easy to use it if they exists
in R.
Thanks.
Yassir
achilleas.psomas at wsl.ch writes:
:
: Hello R-Helpers..
:
: I am still new in R and I have the following question..
: I am applying the function chull on a 2D dataset and have the convex hull
: nicely
: calculated and plotted.
: Do you know if there is a way to extract the coordinates of the
Thank you for your quick respons, helps, advise, links, etc.
I have solved my problems now.
Best wishes,
Xiyan Lon
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide!
I want to flatten a matrix and unflatten it again. Please tell me how to
do it.
1. given a matrix:
x1 y1 z1
x2 y2 z2
...
xk yk zk
convert it to a vector:
x1, y1, z1, x2, y2, z2, ..., xk, yk, zk
2. given a vector:
x1, y1, z1, x2, y2, z2, ..., xk, yk, zk
convert it to a matrix
x1 y1 z1
x2 y2 z2
Hi,
two questions - I think simple to solve for you ...
(1) I've written a function containing some loops.
Each loop will generate a few outputs. Finally I have to combine them to get
something like a spreadsheet that my colleagues can import in EXCEL.
Up to now I'm doing it as follows:
With
If you can rearrange things to work column-wise rather than row-wise, then
dim(x) - NULL
makes a matrix into a vector by concatenating columns, and
dim(x) - c(m,n)
makes the vector x into a matrix with column 1 equal to the first m elements
of x, column 2 equal to the next m elements, etc.
If
Dear R
I recently did a scatterplot matrix using the following command
pairs(sleep[c(SlowSleep, ParaSleep, logbw, logbrw, loglife,
loggest)],col=1+as.integer(ParaSleep 5.5 | SlowSleep 15.7))
this highlighted outlying points for some of the x,y plots that I needed to
identify. Unfortunately this
Bill Simpson William.Simpson at drdc-rddc.gc.ca writes:
:
: I want to flatten a matrix and unflatten it again. Please tell me how to
: do it.
:
: 1. given a matrix:
: x1 y1 z1
: x2 y2 z2
: ...
: xk yk zk
: convert it to a vector:
: x1, y1, z1, x2, y2, z2, ..., xk, yk, zk
:
: 2. given a
yassir rabhi wrote:
Hi,
I'm student from canada, and i'work in survival
analysis.I want to know if there is a hazard function
or cumulative hazard function in R or not, i know how
to program it, but it is easy to use it if they exists
in R.
Thanks.
1. Have you looked at the survival package? Venables and Ripley
(2002) Modern Applied Statistics with S (Springer) has a chapter on
survival analysis that I found quite helpful. The survival package
includes hazard plots, which are discussed in Venables and Ripley.
2. If that is
I've used rimage to read in graphics files (jpeg.) If I recall correctly, I
think I had to install some libraries. What I can't recall is if it was any
faster than pixmap, as I was mainly concerned with the file format and the
forensic image processing possibilities.
Tom
-Original
Dear Sir,
I get an error message when I use polr() in MASS package.
My data is ord.dat. I made y a factor.
y y1 y2 x lx
1 0 0 0 3.2e-02 -1.49485
2 0 0 0 3.2e-02 -1.49485
3 0 0 0 1.0e-01 -1.0
4 0 0 0 1.0e-01 -1.0
5 0 0 0 3.2e-01 -0.49485
6 0 0 0 3.2e-01
Dear all-helpers:
I create one package ,code like this:
output -
function(x,y)
{
zz -textConnection(foo,w)
sink(zz)
a -5
b -6
z -a*b
z
e -spss
h -c(1,2,3)
ls()
r-c(s,p,s,s)
p-list(1:10)
p
sink()
It seems to me that you are trying to do too much at a time. Firstly I think it
would be a good idea to get you code working before you try and make a package.
Some possibilities are that you write somethin meaningful rather than the first
thing that pops into your head. What sort of output are
dear ALL-R-helper:
I modify my question in textconnection output:
I wrote one function in Rgui:
output - function(y){
x - textConnection(foo,w)
sink(x)
a -5
b -6
z -a*b
z
e -spss
h -c(1,2,3)
ls()
r-c(s,p,s,s)
Michael S michael_shen at hotmail.com writes:
:
: Dear all-helpers:
:
: I create one package ,code like this:
: output -
: function(x,y)
: {
: zz -textConnection(foo,w)
: sink(zz)
: a -5
: b -6
: z -a*b
: z
: e -spss
: h -c(1,2,3)
: ls()
:
Michael S michael_shen at hotmail.com writes:
:
: dear ALL-R-helper:
: I modify my question in textconnection output:
: I wrote one function in Rgui:
: output - function(y){
: x - textConnection(foo,w)
: sink(x)
: a -5
: b -6
: z -a*b
: z
: e -spss
:
I'm not sure how to best explain what I am after but here goes. I have a data
frame with 2 geographical factors. One is the major region the other is the
component regions.
I am trying to process all the regions at the same time without using for. So
I need (think, I do) a list of matrices
I wrote a function that created the crosstab and removed the extraneous lines
and then used lapply
aestabs - function(x){
temp - xtabs(psn ~ lga + year,x)
temp - temp[rowSums(temp) != 0,]
return(temp)
}
eas2 - lapply(split(ipi$eas,ipi$eas$RegionNum),aestabs)
It's not really
This is always tricky. Here is a work-around.
Try asking for the Hessian with the original fit:
fm - polr(factor(y) ~ lx, data = ord.dat, Hess=T)
summary(fm)
Call:
polr(formula = factor(y) ~ lx, data = ord.dat, Hess = T)
Coefficients:
Value Std. Error t value
lx 2.420614 0.8146359
Brett Stansfield wrote:
Dear R
I recently did a scatterplot matrix using the following command
pairs(sleep[c(SlowSleep, ParaSleep, logbw, logbrw, loglife,
loggest)],col=1+as.integer(ParaSleep 5.5 | SlowSleep 15.7))
this highlighted outlying points for some of the x,y plots that I needed to
Noel Anel wrote:
Hello!
Which class(model) is most appropriate for numeric predition?
This is a joke, isn't it?
It highly depends on your problem (what numeric predition means), the
data, your criterion what most appropriate means, etc.
Please read some basic textbook(s) on statistics or look
Gerrit Eichner wrote:
Dear all,
I work with R Version 2.0.0 on
Machine hardware: sun4u
OS version: 5.9
Processor type: sparc
Hardware: SUNW,Sun-Blade-1000
and I have a very simple data frame (called OR) with the following
variables:
sapply( OR, class)
Xci
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