[R] Finding density curve peak

2007-06-02 Thread Davendra Sohal
Hi all, I have a dataset where I get a density curve of a continuous variable with two peaks. How can I get the peaks? Any simple solutions? Many thanks. -D. [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list

[R] Pelora problem

2006-12-22 Thread Davendra Sohal
Hi all, I'm using Pelora (supclust) package for supervised clustering of a microarray dataset. The original package does not delete the genes that are present in the earlier clusters for further cluster identification. This leaves us with mostly redundant clusters. I played around with the source

[R] Selective subsetting

2006-11-10 Thread Davendra Sohal
Hi all, Here's an interesting (for me, at least!) problem I came across: I have a correlation matrix, let's say with 6 variables, A to F, as column headings and the same 6 as row headings. The matrix is filled with correlation coefficients. Therefore, the diagonal is all 1's, and each of the two

[R] Memory issues

2006-09-03 Thread Davendra Sohal
Hi, I'm using R on Windows and upgraded the computer memory to 4GB, as R was telling me that it is out of memory (for making heatmaps). It still says that the maximum memory is 1024Mb, even if I increase it using memory.limit and memory.size. Is there a way to permanently increase R's memory quota

[R] Dendrogram troubles

2006-08-29 Thread Davendra Sohal
Hi, I am making a dendrogram with 180 terminal values. Whether I keep it horizontal or vertical, it gives a 'squished' graph that refuses to be stretched beyond the window size and I cannot read the labels. (I'm using hclust and then plot to make the tree.) Is there a way to stretch the graph in

[R] Hierarchical clustering

2006-08-15 Thread Davendra Sohal
Hi, I'm new to R; this is my second email to this forum. I have a dataset that looks like this: GeneA B C D A 511 6116 15151515 B

[R] Hierarchical clustering

2006-08-15 Thread Davendra Sohal
Hi, I'm new to R; this is my second email to this forum. I have a dataset that looks like this: Gene AB 12536.25 2532.2 22527.35 4583.3 There are about 4 genes with 3-10 patients per dataset. Gene expression values fill

[R] Multiple density curves

2006-08-10 Thread Davendra Sohal
Hi, I am new to R...a recent convert from SAS. I have a dataset that looks like this: SEQA1A2 A532.5554.5 B25.535.5 C265.2522.2 D245.55521.56 E546.52141.52 F243.2532.56 G452.55635.56 H15.1416.54 I543.4646.56 J