RE: [R] about colnames

2004-12-21 Thread michael watson \(IAH-C\)
Try colnames(df)[4:6] - c(x,y,z) -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of [EMAIL PROTECTED] Sent: 21 December 2004 09:45 To: [EMAIL PROTECTED] Subject: [R] about colnames Hello sir: If there's a data frame(with name df): a b c d e f 1 10

[R] Creating a vector of colours that are as different from one another as possible

2004-12-21 Thread michael watson \(IAH-C\)
Hi I want to create a vector of colors that are as different from one another as possible. ?rainbow states Conceptually, all of these functions actually use (parts of) a line cut out of the 3-dimensional color space This suggests to me that the resulting colors are all placed on this line

[R] Memory problem with jpeg() and wide jpegs

2004-12-20 Thread michael watson \(IAH-C\)
Hi I have been creating very, very long jpeg images for the last two weeks using jpeg(). All of a sudden, and I mean that, it's stopped working - I've not changed a thing! The error message I get is: jpeg(out.jpg,width=5,height=480, quality=100) Error in devga(paste(jpeg:, quality, :,

Re: [R] Producing Editable Graphs for PowerPoint

2004-12-20 Thread Michael Prager
thanks Paul -- Michael H. Prager, Ph.D. Population Dynamics Team NOAA Center for Coastal Habitat and Fisheries Research NMFS Southeast Fisheries Science Center Beaufort, North Carolina 28516 USA http://shrimp.ccfhrb.noaa.gov/~mprager/ __ [EMAIL

RE: [R] Memory problem with jpeg() and wide jpegs

2004-12-20 Thread michael watson \(IAH-C\)
: Mon 12/20/2004 5:37 PM To: Uwe Ligges Cc: michael watson (IAH-C); [EMAIL PROTECTED] Subject:Re: [R] Memory problem with jpeg() and wide jpegs It is also several times greater than the limit of human perception, being several feet long at printing resolutions that need a magnifying

RE: [R] problems with limma

2004-12-20 Thread michael watson \(IAH-C\)
Could you give a bit more detail about your experimental design? You're using affy, so you're working with single channel data - so nzw, akr and bas all have six arrays? -Original Message- From: [EMAIL PROTECTED] on behalf of [EMAIL PROTECTED] Sent: Mon 12/20/2004 8:45 PM To:

RE: [R] PHP MySQL and R

2004-12-17 Thread BEER Michael
to do this in an elegant way. --- Problem #2: ... - Paste the appropriate values of summary.lm into an SQL statement (INSERT INTO ...) and send this command to your database using dbSendQuery(...) again. Yours, Michael

[R] If it's not a data.frame, matrix or vector, what is it?

2004-12-17 Thread michael watson \(IAH-C\)
Hi Forgive my ignorance. I am selecting a column of a data.frame using the column name, and I want to know what the resulting column is. My data frame is called submin and the column name is held in a variable called display.gname Eg: is.data.frame(submin) [1] TRUE

[R] Incorrect permissions to edit database package

2004-12-16 Thread michael watson \(IAH-C\)
Hi I am running R 2.0 on Suse Linux 8.2. I get an error message when loading a library: Incorrect permissions to edit the package database, /usr/lib/R/library/liblisting.Rda: save.locLib(locLibList, curLib) However, when I look at that file, the user I am running R as has r and w permissions

AW: [R] Problem with German special characters

2004-12-15 Thread Wolf, Michael
Dear Prof. Ripley, thanks for your help. Everything is working fine! With best regards Michael Wolf -Ursprüngliche Nachricht- Von: Brian D Ripley [mailto:[EMAIL PROTECTED] Gesendet: Mittwoch, 15. Dezember 2004 09:01 An: Wolf, Michael Betreff: Re: [R] Problem with German special

[R] Problem with German special characters

2004-12-14 Thread Wolf, Michael
all characters in the correct way. What can I do to get the correct output of the special characters? Thanks for your help in advance! Mit freundlichen Grüßen Dr. Michael Wolf Bezirksregierung Münster Dezernat 61 Domplatz 1-348161 Münster Tel.: ++ 49 (02 51) / 4 11 - 17 95 Fax.: ++ 49

RE: [R] R: functions problem

2004-12-13 Thread michael watson \(IAH-C\)
Sometimes it's in function_name.default Eg: barplot function (height, ...) UseMethod(barplot) environment: namespace:graphics barplot.default function (height, width = 1, space = NULL, names.arg = NULL, legend.text = NULL, beside = FALSE, horiz = FALSE, density = NULL, angle = 45,

RE: [R] Create a plot legend in a new window

2004-12-10 Thread michael watson \(IAH-C\)
legend in a new window :-D Mick -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of michael watson (IAH-C) Sent: 09 December 2004 13:57 To: [EMAIL PROTECTED] Subject: RE: [R] Create a plot legend in a new window Following on from this, what I want

RE: [R] Returning to normal after call to layout()

2004-12-10 Thread michael watson \(IAH-C\)
12:12 To: michael watson (IAH-C) Cc: [EMAIL PROTECTED] Subject: Re: [R] Returning to normal after call to layout() On 10 Dec 2004 at 11:47, michael watson (IAH-C) wrote: Hi I have a function which draws a plot, using the layout() function to divide the screen into two parts. The function

[R] Returning to normal after call to layout()

2004-12-10 Thread michael watson \(IAH-C\)
Hi I have a function which draws a plot, using the layout() function to divide the screen into two parts. The function works fine, but then my next call to plot() draws the plot in the first section of the plot I've just drawn using layout() - whereas what I want it to do is create a new plot.

[R] Create a plot legend in a new window

2004-12-09 Thread michael watson \(IAH-C\)
Hi I have a complicated plot which has a potentially large legend. What I want to do is actually create the legend in a new window. Has anyone done this before? I'd like to be able to create a window with just the legend in it, and have it so the window is just the right size etc. I'm sure

RE: [R] Create a plot legend in a new window

2004-12-09 Thread michael watson \(IAH-C\)
fill the entire window, starting at the top-left? Thanks Mick -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of michael watson (IAH-C) Sent: 09 December 2004 11:52 To: [EMAIL PROTECTED] Subject: [R] Create a plot legend in a new window Hi I have

RE: [R] US 2004 Elections map

2004-12-09 Thread michael watson \(IAH-C\)
So, ahem, it would be pretty easy to swap the colors round and claim a Kerry victory? ;) -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Hedderik van Rijn Sent: 09 December 2004 14:36 To: [EMAIL PROTECTED] Subject: [R] US 2004 Elections map even for

RE: [R] Final comment from a newbie

2004-12-02 Thread michael watson \(IAH-C\)
Made me decide not to post my hopelessly amateur question on getting R to remember my proxy settings between sessions... On Linux/unix or Windows or something else? On linux/unix, set the environment variable http_proxy *and* UNSET the environment variable no_proxy, if it exists. On Windows,

[R] Gap between axis and bars in barplot()

2004-12-02 Thread michael watson \(IAH-C\)
Hi Windows XP, R 2.0.1. I am drawing a very large barplot using jpeg() - setting the width to 10,000 as there are over 5000 bars. This all works fine and I get exactly what I want - except there is a huge bit of white space between the Y-axis and the first bar - so much in fact that I have to

Re: [R] Final comment from a newbie_and another

2004-12-02 Thread Michael Griffiths
and lets face it, with a deadline looming and what appears to be an insurmaountable question wouldn't anyone ask for help? Signing off now...maybe in a hour just to see some responses to these postings Michael Griffiths, Ph.D. Chemometrician Training, Quality and Statistics Group LGC

[R] Drawing a rectangle around a barplot()

2004-12-02 Thread michael watson \(IAH-C\)
Hi I want to draw a rectangle behind a barplot such that it highlights those particular bars from the rest of the plot. I have figured out how to draw a barplot(), and then how to draw a rectangle of the correct shape and size (using rect()), but when I use rect() it draws over the top of the

RE: [R] Drawing a rectangle around a barplot()

2004-12-02 Thread michael watson \(IAH-C\)
Thanks! Barry's suggestion did the trick. Mick -Original Message- From: Marc Schwartz [mailto:[EMAIL PROTECTED] Sent: 02 December 2004 13:10 To: Barry Rowlingson Cc: michael watson (IAH-C); R-Help Subject: Re: [R] Drawing a rectangle around a barplot() On Thu, 2004-12-02 at 11:07

[R] barplot() using beside=TRUE and the density argument

2004-12-01 Thread michael watson \(IAH-C\)
Hi I am using barplot() to draw some barplots, with a matrix as the data so that multiple bars are drawn for each data point. I want to use the argument beside=TRUE to juxtapose the bars instead of stacking them. If I execute: barplot(data,names.arg=names,density=c(20,10),beside=FALSE) I get

[R] Data Frame Manipulations

2004-12-01 Thread michael watson \(IAH-C\)
Hi I have used merge() to merge two data frames, very much like performing a SQL join. Now I want to do a few different SQL-style things and I wondered if there were functions to do it... Is there a group by style function? For example if I merge() two data frames and end up with multiple

RE: [R] Re: Protocol for answering basic questions

2004-12-01 Thread michael watson \(IAH-C\)
Here here! Getting flamed for asking dumb questions on a public mailing list is all part of growing up and being a man/woman. We've all been there, and quite frankly, even the most basic questions on R-Help get a decent answer from someone, and all for free, so who cares if you get a bit of

[R] Opening connection to FTP site

2004-11-30 Thread michael watson \(IAH-C\)
Hi Is it possible to open a connection to an FTP site such that I can read the directory listing? Eg: URL - url(ftp://ftp.ensembl.org;, open=r) Error in url(ftp://ftp.ensembl.org;, open=r) : unable to open connection URL - url(ftp://ftp.ensembl.org;) open(URL) Error in

[R] Building latest version of package

2004-11-29 Thread michael watson \(IAH-C\)
Hi I have a package which was built using R 1.9.1 and everything worked fine. I recently upgraded to R 2.0.1 and tried to re-install my package - and I got: Error in library(mypackage) : 'mypackage' is not a valid package -- installed 2.0.0? So I tried rebuilding it using my new version of R:

[R] Tetrachoric and polychoric ceofficients (for sem) - any tips?

2004-11-28 Thread Michael Dewey
code? (d) I appreciate this last item is not strictly an R question, but my intention is to use these as input into the sem package for structural equation models. If anyone thinks that is misguided I would be intersted to here. Michael Dewey [EMAIL PROTECTED

RE: [R] help with error message

2004-11-25 Thread Michael Griffiths
) } # group entered as group=subset(sub2, factor(Analyte)==Cholesterol) for example # # # # # Please ignore the commented out lines, these were put in for my own use. The code gave the same error message with them removed. Thankyou for your help Mike Griffiths Michael Griffiths, Ph.D

RE: [R] help with error message - problem solved

2004-11-25 Thread Michael Griffiths
Apologies to the listing, the problem was with the data set and not the code Thanks Michael Griffiths, Ph.D. Chemometrician Training, Quality and Statistics Group LGC Limited Queens Road Teddington Middlesex, TW11 0LY, UK Tel: +44 (0)20 8943 7352 Fax: +44 (0)20 8943 2767 e-mail: [EMAIL

[R] logistic regression and 3PL model

2004-11-24 Thread Michael Lau
a logistic regression in R. Thanks much, Mike Lau __ Michael Y. Lau, M.A. 118 Haggar Hall Department of Psychology University of Notre Dame Notre Dame, IN 46556 [[alternative HTML version deleted

RE: [R] How to insert one element into a vector?

2004-11-22 Thread michael watson (IAH-C)
There must be a million ways of doing this! If you want to keep the order: v - c(1,2,3,4,6) sort(c(v,5)) Mick -Original Message- From: jing tang [mailto:[EMAIL PROTECTED] Sent: 22 November 2004 14:44 To: [EMAIL PROTECTED] Subject: [R] How to insert one element into a vector? suppose

Re: [R] variable object naming

2004-11-22 Thread Michael Grant
, set it to a value. Use assign. As in assign(paste(file, 1, max, sep=), 1) ls() [1] file1max (Brian Ripley, June 18, 2001) ... END FROM STAT-R-US Regards, Michael Grant --- Benjamin M. Osborne [EMAIL PROTECTED] wrote: Is it possible to give a temporary object a name that varies with each

Re: [R] SAS or R software

2004-11-21 Thread Michael Friendly
, the active hard work of many R developers has led to R graphics for which the *default* results for many graphs avoid many of the egregious design errors introduced in SAS in the days of pen-plotters (+ signs for points, cross-hatching for area fill). -Michael -- Michael Friendly Email: [EMAIL

RE: [R] subset on data frame

2004-11-20 Thread michael watson (IAH-C)
Try something like mydataframe[rownames(mydataframe) %in% myrow,] Mick -Original Message- From: Lei Jiang [mailto:[EMAIL PROTECTED] Sent: Sat 11/20/2004 12:54 AM To: [EMAIL PROTECTED] Cc: Subject:[R] subset on data frame I have a data frame. And I'd like to subset

[R] More problems checking an R package

2004-11-19 Thread michael watson (IAH-C)
Hi I am having a few more miscellaneous problems when I run R CMD check on my package. All of the early stuff works OK. I get a WARNING at the checking S3 generic/method consistency stage, where it seems to think two of my fucntions are inconsistent with plot() (I don't understand why it thinks

[R] Building package on Linux and Windows

2004-11-19 Thread michael watson (IAH-C)
Hi OK, final stretch now, thank you to everyone who has helped! (hopefully) final question - what does R CMD build actually do that tar/gzip and WinZip do not? I have successfully used R CMD build to create a .tar.gz version of my package, which installs well and works under Linux - hurray! I

RE: [R] Building package on Linux and Windows

2004-11-19 Thread michael watson (IAH-C)
No need, got it now :-) Thanks M -Original Message- From: michael watson (IAH-C) Sent: 19 November 2004 14:06 To: [EMAIL PROTECTED] Subject: [R] Building package on Linux and Windows Hi OK, final stretch now, thank you to everyone who has helped! (hopefully) final question - what

RE: [R] The hidden costs of GPL software?

2004-11-19 Thread Michael Grant
I inadvertently directed this response to the R-Gui list this morning. To those receiving a double receipt, I give my apologies. My intended list was the R list. --- Duncan Murdoch [EMAIL PROTECTED] wrote: On Thu, 18 Nov 2004 03:24:01 -0800 (PST), Michael Grant [EMAIL PROTECTED] wrote

Re: [R] adjusting the map of France to 1830

2004-11-19 Thread Michael Friendly
north to south --- they don't correspond to the 'official' administrative region numbers. As well, the departement names don't always match exactly (ignoring accents, e.g., Val-d'Oise vs. Val-Doise) so it would be another challenge to plot my historical data on the map of France. -Michael

Re: [R] The hidden costs of GPL software?

2004-11-18 Thread Michael Grant
. Now that does bring us around to supporting R doesn't it? (Mea culpa. And I resolve to do better!) What value does one put on the vitality of the R community? Best regards, Michael Grant, Ph.D. * The requirements for creating packages are on target, and have the desired impact on both

[R] Errors checking a library

2004-11-18 Thread michael watson (IAH-C)
Hi I am writing an R library. The documentation for one of my functions includes an example that I *know* works - simply cut and paste into R on either Windows and Linux and it works perfectly, no errors or warnings, nothing, nyet. However, when I run R CMD check on the library, I get an error.

[R] Re: The hidden costs of R?

2004-11-18 Thread Michael A. Miller
. See http://www.r-project.org/doc/bib/R-publications.html and http://www.r-project.org/doc/bib/R_bib.html for yet more. Mike -- Michael A. Miller [EMAIL PROTECTED] Imaging Sciences, Department of Radiology, IU School of Medicine

[R] adjusting the map of France to 1830

2004-11-18 Thread Michael Friendly
; proc gremove data=gfrtemp out=gfrance; by dept; id id; run; -- Michael Friendly Email: [EMAIL PROTECTED] Professor, Psychology Dept. York University Voice: 416 736-5115 x66249 Fax: 416 736-5814 4700 Keele Streethttp://www.math.yorku.ca/SCS/friendly.html Toronto, ONT M3J 1P3

[R] Simple plot() question

2004-11-16 Thread michael watson (IAH-C)
? Cheers Mick Michael Watson Head of Informatics Institute for Animal Health, Compton Laboratory, Compton, Newbury, Berkshire RG20 7NN UK Phone : +44 (0)1635 578411 ext. 2535 Mobile: +44 (0)7990 827831 E-mail: [EMAIL PROTECTED] __ [EMAIL PROTECTED] mailing

[R] Difference between two correlation matrices

2004-11-16 Thread michael watson (IAH-C)
Hi Now a more theoretical question. I have two correlation matrices - one of a set of variables under a particular condition, the other of the same set of variables under a different condition. Is there a statistical test I can use to see if these correlation matrices are different? Thanks

[R] Installation problems with R.classes bundle

2004-10-29 Thread Michael Griffiths
Does anyone have any clues as to what I have done wrong? Thankyou for your help. Mike Griffiths Michael Griffiths, Ph.D. Chemometrician Training, Quality and Statistics Group LGC Limited Queens Road Teddington Middlesex, TW11 0LY, UK Tel: +44 (0)20 8943 7352 Fax: +44 (0)20 8943 2767 e-mail: [EMAIL

[R] Filling polygons with points

2004-10-14 Thread Wolf, Michael
Dear list, are there any possibilities to fill a polygon with a point pattern or with a symbol pattern like '+' oder '-' instead of shading lines? Thanks in advance Dr. Michael Wolf Bezirksregierung Münster Dezernat 61 Domplatz 1-348161 Münster Tel.: ++ 49 (02 51) / 4 11 - 17 95 Fax

[R] 64-bit R on Intel Xeon EM64T running fine

2004-10-11 Thread Michael Seewald
x86_64 bit Linux or - Red Hat Enterprise Linux Workstation 3.0 x86_64 bit R: - v2.0.0 Really, no problems at all during setup, a big thank you to the R developers making this possible! Best wishes, Michael __ [EMAIL PROTECTED] mailing list https

[R] read.delim problem with trailing spaces

2004-10-06 Thread Michael Friendly
. -Michael -- Michael Friendly Email: [EMAIL PROTECTED] Professor, Psychology Dept. York University Voice: 416 736-5115 x66249 Fax: 416 736-5814 4700 Keele Streethttp://www.math.yorku.ca/SCS/friendly.html Toronto, ONT M3J 1P3 CANADA __ [EMAIL

Summary, was [R] Plotting panels at arbitrary places on a map, rather than on a lattice

2004-10-06 Thread Michael Dewey
At 17:58 01/10/04, Michael Dewey wrote: I think it is easiest to describe what I want in terms of the concrete problem I have. I have data from a number of countries in each of which a sample of people was interviewed. In presenting the results in a forthcoming collaborative publication much

[R] Installation Package gregmisc nicht möglich?!?

2004-10-05 Thread Michael Weber
? Mir würde auch eine ältere Version von R genügen (mit den Packages foreign, x-table und gregmisc). Falls jemand einen Link auf eine ältere funktionsfähige Version hat oder die Dateien direkt per Mail schicken könnte wäre ich dankbar. Mfg Michael Weber [[alternative HTML version deleted

[R] Need R Version 1.8.0 or earlier

2004-10-05 Thread Michael Weber
Hello. I need R in Version 1.8.0 or earlier. I also need the packages foreign, x-table and gregmisc for this version. Does anyone know where I can get it? Greetings Michael Weber [[alternative HTML version deleted]] __ [EMAIL PROTECTED

Re: [R] conditional assignments and calculations

2004-10-04 Thread Michael Lachmann
... Thank you very much! Michael Gabor Grothendieck wrote: Michael Lachmann lachmann at eva.mpg.de writes: : : Hello! : : I am using the TeXmacs interface to R. (Though I encountered a similar : problem when using Sweave) : In doing calculations I often ecounter this scenario: I'll have some

[R] Help with normal distributions

2004-10-04 Thread michael watson (IAH-C)
Hi I have two questions, the first perhaps dumber than the second. Firstly, I have a data set, and when I plot a histogram it looks like a normal distribution. So I want to overlay a bell-shaped normal distribution on top of it, to demonstrate how similar it is to the normal distribution. I

[R] conditional assignments and calculations

2004-10-02 Thread Michael Lachmann
' time updated automatically. (Though then it is a bit problematic to decide what the 'last updated' time should be for variables loaded from a file...) 5. The whole thing is rather cludgy. But I haven't found a good way to implement it. Suggestions? Thanks, Michael

[R] Lattice .ps graphic is rotated in LaTeX slides

2004-10-01 Thread Michael Friendly
, or how could I do it differently so it would work? thanks -- Michael Friendly Email: [EMAIL PROTECTED] Professor, Psychology Dept. York University Voice: 416 736-5115 x66249 Fax: 416 736-5814 4700 Keele Streethttp://www.math.yorku.ca/SCS/friendly.html Toronto, ONT M3J 1P3 CANADA

[R] Plotting panels at arbitrary places on a map, rather than on a lattice

2004-10-01 Thread Michael Dewey
be crude, as long as Italy looks roughly like a boot that is fine. I am an epidemiologist not a geographer. Michael Dewey [EMAIL PROTECTED] __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

Re: [R] Lattice .ps graphic is rotated in LaTeX slides

2004-10-01 Thread Michael Friendly
way: \rotatebox{180}{\includegraphics[angle=90,height=.6\textheight]{fig/barley2x3.ps}} thanks, -Michael Marc Schwartz wrote: On Fri, 2004-10-01 at 10:09, Michael Friendly wrote: I've generated a version of the classic dotplot of the barley data with library(lattice) data(barley) trellis.device

[R] Plotting large texts into pdf file

2004-09-28 Thread Jacob, Michael J.
? For automation reasons I would like to have R output the text directly into the pdf. Thanks in advance Michael ** Der Inhalt dieser E-Mail ist vertraulich und ausschliesslich fuer den bezeichneten Adressaten bestimmt. Wenn Sie nicht

AW: [R] How to improve the quality of curve/line plots?

2004-09-24 Thread Wolf, Michael
it seems to be a problem of the graphic output!? Michael Wolf -Ursprüngliche Nachricht- Von: Uwe Ligges [mailto:[EMAIL PROTECTED] Gesendet: Freitag, 24. September 2004 09:00 An: Wolf, Michael Cc: [EMAIL PROTECTED] Betreff: Re: [R] How to improve the quality of curve/line plots? Wolf

AW: AW: [R] How to improve the quality of curve/line plots?

2004-09-24 Thread Wolf, Michael
in order to get an optimal output! Best wishes, Michael Wolf __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

[R] How to improve the quality of curve/line plots?

2004-09-23 Thread Wolf, Michael
with a higher resolution on the screen (I think it's not a question of the pdf- or png command.). Perhaps, it's a problem of the graphical possibilites of R because the most line plots which can be seen on the web have these problems. Thanks, Dr. Michael Wolf Bezirksregierung Münster Dezernat 61

[R] rolling n-step predictions for ARIMA models

2004-09-14 Thread Michael Roberts
write some code that does this for my particular problem, but might there exist a package/function that does this that I cannot find? Thanks, -Michael Michael J. Roberts Resource Economics Division Production, Management, and Technology USDA-ERS (202) 694-5557 (phone) (202) 694-5775 (fax

Re: [R] Rcmdr X11 protocol error message

2004-09-04 Thread Michael Bibo
John Fox wrote: Dear Michael and Peter, I've made the following changes to the current development version of the Rcmdr package (on my web site, at http://socserv.socsci.mcmaster.ca/jfox/Misc/Rcmdr/index.html, but not posted to CRAN): (1) The default for the Rcmdr grab.focus option is now set

RE: [R] Problems with heatmap.2

2004-09-03 Thread michael watson (IAH-C)
, d is NOT a square matrix either) Cheers Mick -Original Message- From: Sean Davis [mailto:[EMAIL PROTECTED] Sent: 02 September 2004 14:39 To: michael watson (IAH-C) Cc: [EMAIL PROTECTED] Subject: Re: [R] Problems with heatmap.2 Didn't test this, but I think you probably want to do

RE: [R] Problems with heatmap.2

2004-09-03 Thread michael watson (IAH-C)
is how to switch off that damn histogram :-D Mick -Original Message- From: michael watson (IAH-C) Sent: 03 September 2004 10:00 To: Sean Davis Cc: [EMAIL PROTECTED] Subject: RE: [R] Problems with heatmap.2 Hi I'm afraid not! heatmap.2(as.matrix(d),Rowv=as.dendrogram(hc.gene

[R] Standard correlation

2004-09-03 Thread michael watson (IAH-C)
Hi Is there a function for computing the standard correlation coefficient (not pearson) in R? Thanks Mick __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide!

RE: [R] Standard correlation

2004-09-03 Thread michael watson (IAH-C)
Drees [mailto:[EMAIL PROTECTED] Sent: 03 September 2004 14:03 To: [EMAIL PROTECTED] Cc: michael watson (IAH-C); Stefan Drees Subject: Re: [R] Standard correlation On Fri, Sep 03, 2004 at 01:30:36PM +0100 - a wonderful day - michael watson (IAH-C) wrote: Is there a function

[R] image() with color key?

2004-09-03 Thread Michael Jerosch-Herold
it seems less straightforward, i.e. generating a color key is not an option in image(). Thank you! Michael Jerosch-Herold __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org

[R] Problems with heatmap.2

2004-09-02 Thread michael watson (IAH-C)
Hi When I give the command: heatmap.2(as.matrix(d),Rowv=as.dendrogram(hc.gene),Colv=FALSE,scale=row ,trace=none,col=greenred.colors(79)) The resulting heatmap has re-ordered my columns! This is time-course data, and I don't want my columns re-ordered! Note from the help: Rowv:

[R] Accessing aov p-value

2004-09-01 Thread michael watson (IAH-C)
Hi I have a data.frame, and want to perform an analysis of variance on each row. I am currently using aov() and summary(), but what I want to do is perform an analysis of variance on each row and then append the F statistic and the p-value to the end of the row, so I can then use these to filter

Re: [R] Rcmdr X11 protocol error message

2004-09-01 Thread Michael Bibo
John Fox wrote: Dear Peter and Michael, I installed Quantian on a spare machine that I have and observed the same warning messages that Michael has been reporting. These (and the problem with help files but not with viewing data sets that Peter reported) occurred with version 0.9-11 of Rcmdr

[R] Multiple dependant proportions and sample size

2004-09-01 Thread Bock, Michael
gladly accepted and I apologize in advance for asking a question that is not really R specific. Michael J. Bock, PhD. ARCADIS 24 Preble St. Suite 100 Portland, ME 04101 207.828.0046 fax 207.828.0062 [[alternative HTML version deleted

[R] Recall: Multiple dependant proportions and sample size

2004-09-01 Thread Bock, Michael
Bock, Michael would like to recall the message, Multiple dependant proportions and sample size. [[alternative HTML version deleted]] __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting

[R] Dependant proportions and sample size

2004-09-01 Thread Bock, Michael
gladly accepted and I apologize in advance for asking a question that is not really R specific. Michael J. Bock, PhD. ARCADIS 24 Preble St. Suite 100 Portland, ME 04101 207.828.0046 fax 207.828.0062 Michael J. Bock, PhD. ARCADIS 24 Preble St. Suite 100 Portland, ME 04101 207.828.0046 fax

[R] Unique lists from a list

2004-09-01 Thread michael watson (IAH-C)
Hi I have a list. Two of the elements of this list are Name and Address, both of which are character vectors. Name and Address are linked, so that the same Name always associates with the same Address. What I want to do is pull out the unique values, as a new list of the same format (ie two

Re: [R] Rcmdr X11 protocol error message

2004-08-31 Thread Michael Bibo
John Fox jfox at mcmaster.ca writes: Dear Michael, A question: Do you observe these problems with tcltk in general or just with the Rcmdr package? Is it possible for you to test a Tcl/Tk program outside of R? And Peter asked which version of Tcl/Tk. Apparently my system has version 8.4

Re: [R] Rcmdr X11 protocol error message

2004-08-30 Thread Michael Bibo
John Fox jfox at mcmaster.ca writes: Dear Peter and Michael, Peter: Thank you for fielding this question. Michael initially contacted me directly, and I suggested that he write to the list since I didn't know the possible source of the problem, had never seen it (either under Windows

[R] Rcmdr X11 protocol error message

2004-08-29 Thread Michael Bibo
skills in diagnosing. If anyone can suggest anything, I would appreciate it. Regards, Michael Bibo Research Officer, Community Health Services, West Moreton Health Service District, Queensland Health. [EMAIL PROTECTED

[R] read.spss warning: unrecognized record type??

2004-08-26 Thread Michael Jerosch-Herold
then meant by the above warning message. Based on this warning, is record type 7 discarded when the data are read in? Thank you in advance for shedding some light on this! Michael Jerosch-Herold __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch

[R] Problems with par() and labels with boxplot

2004-08-26 Thread michael watson (IAH-C)
Quite a simple one really! When I run boxplot(), the labels on the X axis are horizontal, and I want them vertical. So I did: par(las=3) boxplot(...) And my labels just aren't there anymore Any help??? __ [EMAIL PROTECTED] mailing list

RE: [R] Problems with par() and labels with boxplot

2004-08-26 Thread michael watson (IAH-C)
: 26 August 2004 09:48 To: michael watson (IAH-C) Cc: [EMAIL PROTECTED] Subject: Re: [R] Problems with par() and labels with boxplot michael watson (IAH-C) wrote: Quite a simple one really! When I run boxplot(), the labels on the X axis are horizontal, and I want them vertical. So I did

RE: [R] Problems with par() and labels with boxplot

2004-08-26 Thread michael watson (IAH-C)
normal. The different behaviour between Windows and Linux is a bit odd though (see my previous post) Mick -Original Message- From: Peter Dalgaard [mailto:[EMAIL PROTECTED] Sent: 26 August 2004 09:51 To: michael watson (IAH-C) Cc: [EMAIL PROTECTED] Subject: Re: [R] Problems with par

RE: [R] Problems with par() and labels with boxplot

2004-08-26 Thread michael watson (IAH-C)
into the available space. It looks like what it is doing (on linux only, not on windows) is deciding there isn't enough space and therefore not drawing the labels. -Original Message- From: Uwe Ligges [mailto:[EMAIL PROTECTED] Sent: 26 August 2004 10:15 To: michael watson (IAH-C) Cc: [EMAIL

[R] Column names of a data frame

2004-08-26 Thread michael watson (IAH-C)
I'm coming out with all the classic problems today ;-) Can anyone tell me how to change the column names of an already existing data frame? I've read the docs for ?data.frame and ?as.data.frame but can't figure it out. I want to make a new data.frame from some of the columns of an existing

[R] Problems with Heatmap

2004-08-25 Thread michael watson (IAH-C)
Hi I am having some problems getting my heatmap to be the right size! Let me explain. I am experienced at getting an hclust or a dendrogram object to be the right size. For example, I have a dataset which has 4000 rows, which I clustered using hclust and I wanted to plot it as a horizontal

Re: [R] Do you know if you can map a large minmum spanning tree in R?

2004-08-18 Thread Michael Sumner
Hope that helps, Mike. ### Michael Sumner - PhD. candidate Maths and Physics (ACE CRC IASOS) and Zoology (AWRU) University of Tasmania Private Bag 77, Hobart, Tas 7001, Australia Phone: 6226 1752 __ [EMAIL

[R] correlation structures in NLME

2004-08-12 Thread Michael Jerosch-Herold
: Warning message: the condition has length 1 and only the first element will be used in: if (!is.na(match(Class, .BasicClasses))) return(newBasic(Class, Thank you! Michael Jerosch-Herold __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman

[R] circular structures in NLME

2004-08-11 Thread Michael Jerosch-Herold
appreciated. Michael Jerosch-Herold __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

[R] extracting the t-statistic: just the numbers, please

2004-07-29 Thread Michael Rennie
? -- Michael Rennie Ph.D. Candidate University of Toronto at Mississauga 3359 Mississauga Rd. N. Mississauga ON L5L 1C6 Ph: 905-828-5452 Fax: 905-828-3792 __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read

[R] Kudos to the R support team

2004-07-29 Thread Michael Rennie
here. Not only are you providing a service to people who are learning R, but indeed helping increase R literacy. Soon, they'll be speaking R on the subway. Thank you all, once again. You are all wonderful people. -- Michael Rennie Ph.D. Candidate University of Toronto at Mississauga 3359

[R] Random Fields

2004-07-16 Thread Michael Axelrod
for any help. Michael Axelrod __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

Re: [R] ROracle - fetch gives empty dataframe

2004-07-14 Thread Michael Seewald
(con) character(0) dbListTables would display something, if you had connected. You should get this working before you proceed. Regards, Michael __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read

[R] Statistics::R

2004-07-08 Thread michael watson (IAH-C)
Hello I am looking (possibly in vain!) for the Author of the Statistics::R perl package - I believe he announced the package on this mailing list some months ago. The name is Graciliano Monteiro Passos, and his e-mail address, [EMAIL PROTECTED], is giving permanent errors. Can anyone help?

[R] R can find some functions in assist package

2004-06-30 Thread Michael Axelrod
I am a new user to R. I installed and loaded the smoothing spline package called assist. The function ssr seems to work, but predict.ssr and some others don't seem to be available, I get a can't find message. But they appear in the extensions folder, c:program

[R] R can't find some functions in assist package

2004-06-30 Thread Michael Axelrod
Oh yes. The load package under the packages menu in the Windows version does that. To check I typed library(assist) after starting R. Same behavior, ssr is found, but others like predict.ssr, and plot.ssr, give a not found message. Thanks for the suggestion. Mike

[R] Unable to start R due to error with tempdir()

2004-06-28 Thread Michael Epstein
Hello, I run R 1.9.1 on a Windows XP machine. In the last week, I have started to get the following error message (about 85% of the time) when I attempt to start R: Fatal error: cannot find unused tempdir name I get this message whether I attempt to start R in interactive or batch mode.

Re: [R] Unable to start R due to error with tempdir()

2004-06-28 Thread Michael Epstein
Are you implying that I should delete all the Rtmp* directories in my temporary dir? Thanks much. On Mon, 28 Jun 2004, Prof Brian Ripley wrote: Take a look at your temporary dir, and see if you can clear it out. ?tempdir tells you where it is. On Mon, 28 Jun 2004, Michael Epstein wrote

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