[R] configure: WARNING: you cannot build info or HTML versions of the R manuals

Rusers, I am trying to build R2.5 on my Kubuntu machine an configure concludes with : configure: WARNING: you cannot build info or HTML versions of the R manuals What do I need to install on my machine to get rid of this warnings? Eryk [[alternative HTML version deleted]]

[R] tcltk support....

Rusers, library(Rcmdr) Loading required package: tcltk Error in firstlib(which.lib.loc, package) : Tcl/Tk support is not available on this system While installing R I run configure with configure --prefix=/bla/bla --with-tcltk make make install configure did not returned any errors.

Re: [R] configure: WARNING: you cannot build info or HTML versions of the R manuals

Texinfo. Not sure if that is also the package name on *ubuntu/debian. It's called texinfo on ubuntu/debian and it fixed the problem. Thanks a lot Peter. Eryk [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list

Re: [R] tcltk support....

that some packages on my system are missing. cheers Eryk On 4/26/07, Stefan Grosse [EMAIL PROTECTED] wrote: tcltk must be installed on your system, it is not a R package. Which Linux are you using? W Eryk Wolski wrote: Rusers, library(Rcmdr) Loading required package: tcltk Error

[R] Translating actxserver server commands to rcom

Dear R and R com user I have the following matlab which acesses a com server, code which I am trying to translate to R using the Rcom package: clear all; clear analysis; analysis = actxserver('EDAL.MSAnalysis');

[R] qqmath - Lattice error

Hi, Don't have a clue what teh following error message generated by this function call: qqmath( ~val|ind,data = xx ,distribution = function(p){ qt(p,df=20)} ,ylab=Sample Quatinles ,xlab=Theoretical Quantiles ,panel=function(x,y) { panel.qqmathline(y

Re: [R] qqmath - Lattice error

with this trunkated dataset the error occurs. Eryk On 5/25/06, Deepayan Sarkar [EMAIL PROTECTED] wrote: On 5/25/06, Witold Wolski [EMAIL PROTECTED] wrote: Hi, Don't have a clue what teh following error message What's the error message? In any case, you seem to have wrong expectations about what

Re: [R] qqmath - Lattice error

Thanks a lot! Eryk On 5/25/06, Sundar Dorai-Raj [EMAIL PROTECTED] wrote: Witold Wolski wrote: Hi, Don't have a clue what teh following error message generated by this function call: qqmath( ~val|ind,data = xx ,distribution = function(p){ qt(p,df=20)} ,ylab

Re: [R] Problem with memory footprint of qq plot generated with lattice

Dave, qqmath(~val|ind,data=xx ,distribution=function(p) qt(p,df=19) ,ylab=Sample Quatinles ,xlab=Theoretical Quantiles ,aspect=1 ,prepanel = prepanel.qqmathline ,panel=function(x,y) { panel.qqmathline(y, distribution=function(p)

Re: [R] regression methods for circular(?) data.

Hi, I do not know the intercept and slope. And you have to know them in order to do something like: ix-(y 0.9*(x-50)/200 I am right? cheers (Ted Harding) wrote: On 26-Sep-05 nwew wrote: Dear R-users, I have the following data x - runif(300,min=1,max=230) y - x*0.005 + 0.2 y -

Re: [R] regression methods for circular(?) data.

(Ted Harding) wrote: On 26-Sep-05 Witold Eryk Wolski wrote: Hi, I do not know the intercept and slope. And you have to know them in order to do something like: ix-(y 0.9*(x-50)/200 I am right? cheers Although I really knew them from the way you generated the data, I pretended I did

Re: [R] Interaction term in anova - how it should be written in a manuscript table?

, Liaw, Andy wrote: I'd suggest a $\times$ b, as you'd find in most stat textbook. Andy From: Witold Eryk Wolski Dear Rgurus, Interaction terms in the linear models function lm are specified by the colon : eg: x ~ a + b + a:b a shortcut for the above is: x ~ a*b the output if calling anova

[R] Violin plot for discrete variables.

. Maybee I should ask it first: Does such a plot make any sense? If not are there better solutions? cheers Eryk. -- Witold Eryk Wolski __( School of Mathematics and Statistics _ \__/ University of Newcastle 'v' ||Newcastle upon Tyne, NE1 7RU, ENGLAND / \ ^^mail

[R] Interaction term in anova - how it should be written in a manuscript table?

Dear Rgurus, Interaction terms in the linear models function lm are specified by the colon : eg: x ~ a + b + a:b a shortcut for the above is: x ~ a*b the output if calling anova on the lm object will be the same in both cases a b a:b ... Resdiuals ... What I am wondering is how the

Re: [R] Concatenate vector into string

-project.org/posting-guide.html paste( c(a,b,c),collapse=) Eryk -- Witold Eryk Wolski __( School of Mathematics and Statistics _ \__/ University of Newcastle 'v' ||Newcastle upon Tyne, NE1 7RU, ENGLAND / \ ^^mail: [EMAIL PROTECTED] m m Phone : 044 (0)191 222

[R] Hot to _set_ an xmlAttr XML xmlAttr set

? Eryk -- Witold Eryk Wolski __( School of Mathematics and Statistics _ \__/ University of Newcastle 'v' ||Newcastle upon Tyne, NE1 7RU, ENGLAND / \ ^^mail: [EMAIL PROTECTED] m m Phone : 044 (0)191 222 5376 FAX : 044 (0)191 222 8020

Re: [R] Need suggestions for plotting 3D plot

@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Witold Eryk Wolski __( School of Mathematics and Statistics _ \__/ University of Newcastle 'v' ||Newcastle upon Tyne, NE1

[R] The system command and the LD_LIBRARY_PATH

Hi R-gurus, In my envirovment I have specified the LD_LIBRARY_PATH to /data/opt/libmy/lib After starting R the LD_LIBRARY_PATH variable is changed. Sys.getenv(LD_LIBRARY_PATH) /data/opt/R-devel//lib/R/lib:/usr/local/lib:/usr/X11R6/lib:/data/opt/libmy/lib The problem is that in

Re: [R] Renaming columns in data.frame, inserting/removing columns from data.frame

https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http://www.molgen.mpg.de/~wolski

Re: [R] Need your help with my R plot

read the posting guide! http://www.R-project.org/posting-guide.html Hi, Take a look at the function: ixyplot in the package IDPmisc. Eryk -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http

Re: [R] S4 class no longer accepts matrix in array slot under 2.0.1

@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219

Re: [R] scatterplot of 100000 points and pdf file format

Prof Brian Ripley wrote: On Wed, 24 Nov 2004 [EMAIL PROTECTED] wrote: On 24-Nov-04 Witold Eryk Wolski wrote: Hi, I want to draw a scatter plot with 1M and more points and save it as pdf. This makes the pdf file large. So i tried to save the file first as png and than convert it to pdf. This looks

[R] scatterplot of 100000 points and pdf file format

to reduce the size but keep the quality? /E -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http://www.molgen.mpg.de/~wolski \__/'v' http://r4proteomics.sourceforge.net||/ \ mail: [EMAIL

Re: [R] scatterplot of 100000 points and pdf file format

=n) mtext(expression(m[nominal]),side=1,line=2) mtext(expression(mod(m[monoisotopic],1)),side=2,line=2) legend(1000,4,expression(paste(lambda[DB],=,0.000495)),col=2,lty=1,lwd=1) abline(test,col=2,lwd=2) dev.off() Marc Schwartz wrote: On Wed, 2004-11-24 at 16:34 +0100, Witold Eryk Wolski wrote

Re: [R] scatterplot of 100000 points and pdf file format

in BioC was there for this purpose: avoid heavy over-plotting lots of points. You might want to look into that, if you have not done so yet. Best, Andy From: Marc Schwartz On Wed, 2004-11-24 at 16:34 +0100, Witold Eryk Wolski wrote: Hi, I want to draw a scatter plot with 1M and more points

Re: [R] R/S-related projects on Sourceforge? Trove Categorization

Hi, This are the project which I have extracted from all your mails. 1. http://sourceforge.net/projects/rpgsql/ R PostgreSQL Interface 2. http://sourceforge.net/projects/r-spatial/ R package for spatial data classes 3. http://sourceforge.net/projects/rpy/ RPy (R from Python) 4.

[R] R/S-related projects on Sourceforge? Trove Categorization

://sourceforge.net/tracker/?func=detailatid=350001aid=967697group_id=1 -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http://www.molgen.mpg.de/~wolski \__/'v' http://r4proteomics.sourceforge.net

Re: [R] - assignment no long work in class methods

://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http://www.molgen.mpg.de/~wolski

[R] gplot.hexbin - how to set figure margin.

! ## -- plot(bin) /E Dipl. bio-chem. Eryk Witold Wolski @MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin'v' tel: 0049-30-83875219/ \ mail: [EMAIL

[R] how lambda is computed in smoot.spline given _df_

Hi, I posted some days ago a question concerning the computation of lambda in the smooth.spline function (which I repreat at the bottom of the mail) given _df_ . Unfortunately the documentation is not clear to me. Maybee someone can help to answer in my view the basic question: If the

[R] smooth.spline _df_ parameter?

to compute: lambda = r * 256^(3*spar - 1)? How _spar_ is set if not defined? /E Dipl. bio-chem. Eryk Witold Wolski @MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin'v' tel: 0049-30-83875219

[R] How to add values to an array at any position.

) of the result vector. /E -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http://www.molgen.mpg.de/~wolski \__/'v' http://r4proteomics.sourceforge.net||/ \ mail: [EMAIL PROTECTED

Re: [R] How to add values to an array at any position.

Hi, In the first place I was wondering if there are no function _insert.vector_ in base. Thanks Peter and Gabor even for the bad news. E. Peter Dalgaard wrote: Witold Eryk Wolski [EMAIL PROTECTED] writes: Hi, How to add values to an array at any position. Asking because of the following: e.g

Re: [R] usage and behavior of 'setIs'

] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http://www.molgen.mpg.de

Re: [R] Intro to R: lecture presentation

__ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219

[R] plot.dendrogram and plot.hclust ZOOM into the height?

to show the tree only for the height of 1e10+-5000 but unfortunately their are no parameter like xlim,ylim in the function? Are there other ways to ZOOM? Any suggestions? /E -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219

[R] Re: plot.dendrogram and plot.hclust ZOOM into the height?

Hi, Just noted that dendr2 - cut(dendr1,h=1) plot(dendr2$upper) Gives what I am looking for. Sorry, Its quite late here. /E Witold Eryk Wolski wrote: Hi, I clustered a distance matrix and would like to draw it using plot.hclust or plot.dendrogram. The dendrogram is not informative because I

Re: [R] C/C++

/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http://www.molgen.mpg.de/~wolski \__/'v' http

Re: [R] colClasses

version deleted]] __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse

Re: [R] R-(wiki)-pedia?

. __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219

[R] setClass - equvalent declarations?

Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219 __( 'v' http://www.molgen.mpg.de/~wolski \__/ / \ mail: [EMAIL PROTECTED]^^ w w [EMAIL PROTECTED] __ [EMAIL

Re: [R] Reading multiple files into R

-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219 'v' http://www.molgen.mpg.de/~wolski / \ mail: [EMAIL PROTECTED] ---W-W [EMAIL PROTECTED

Re: [R] Rnewsletter article example

. __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195

Re: [R] function by

/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219 'v' http://www.molgen.mpg.de/~wolski / \ mail: [EMAIL PROTECTED] ---W-W [EMAIL PROTECTED

Re: [R] Is there any way to release memory in running time?

__ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin

Re: [R] add-on packages

! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219 'v' http://www.molgen.mpg.de/~wolski / \ mail: [EMAIL PROTECTED] ---W-W [EMAIL

Re: [R] slow loops in Monte Carlo Simulations

Department of Econometrics University of Muenster Germany __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski

Re: [R] S4 method selection based on second argument

://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219 'v' http://www.molgen.mpg.de/~wolski

Re: [R] Best device for printing quality

] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Witold Eryk Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin'v' tel: 0049-30-83875219

[R] How to plot residuals vs. fitted of trgls object (spatial::surf.gls)

Hi! Would like to to make a plot of residuals vs. fitted and Y vs. predicted values from an object of class trgls as returned by spatial::surf.gls directly. (without calling spatial::predict.trgls) Is it possible? on which list components should I look at? /E

Re: [R] persiting complex R objects

guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Witold Eryk Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin'v' tel: 0049-30-83875219/ \ mail: [EMAIL PROTECTED]---W-Whttp

Re: [R] Multiple operations on list

Hi! Not sure if I got your point. But if it is to compute apply a function to all pairs (x1,x2);(x1,x3);(x2,x3) where x1,x2,x3 are stored in a list you can take look at the sources of function listdist which computes an object of class dist from a list, in the package pairseqsim available

Re: [R] Conditionally swap two columns of a data.frame?

-project.org/posting-guide.html Dipl. bio-chem. Witold Eryk Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin'v' tel: 0049-30-83875219/ \ mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski

Re: [R] Multi-dimensional scaling

. Witold Eryk Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin'v' tel: 0049-30-83875219/ \ mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski [EMAIL PROTECTED

Re: [R] Density Estimation

. __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Witold Eryk Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin'v

Re: [R] erase columns

/ __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Witold Eryk Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73

Re: [R] Sweave echoing comments (again)

. __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Witold Eryk Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin'v

Re: [R] using text on the x axis ticks rather than numbers

Hi! first supress axis drawing with param axes=FALSE in your plot function. The use axis function to add your axes. ?axis /E On Tue, 7 Sep 2004, Rajarshi Guha wrote: Hello, is there a way in which I can use text labels rather than numbers on the x axis ticks? I basically have a vector of

Re: [R] substitution in expression

Fax : 01865 226 962 __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Witold Eryk Wolski @ MPI-Moleculare

Re: [R] substitution in expression

Old Road Campus, Headington, Oxford Fax : 01865 226 962 __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Witold Eryk Wolski

RE: [R] Standard correlation

__ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Witold Eryk Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin

Re: [R] Accesing the name of an assigned object in a function

?assign /E On Wed, 1 Sep 2004, Henrik Andersson wrote: I want to use the name that I assign to an object in the function that produces the output, somewhat like below: stupid.function - function(input){ [body] cat(Summarized output is , output$summary, Full output is

Re: [R] (no subject)

__ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Witold Eryk Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin

Re: [R] blockwise sums

://www.R-project.org/posting-guide.html Dipl. bio-chem. Witold Eryk Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin'v' tel: 0049-30-83875219/ \ mail: [EMAIL PROTECTED]---W-Whttp

Re: [R] More efficient matrix computation

-guide.html Dipl. bio-chem. Witold Eryk Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin'v' tel: 0049-30-83875219/ \ mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski [EMAIL

Re: [R] Sparse Matrices in R

-guide.html Dipl. bio-chem. Witold Eryk Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin'v' tel: 0049-30-83875219/ \ mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski [EMAIL

Re: [R] About passing parameter to '.R' script file

Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski __ [EMAIL

Re: [R] for (i in ...) { df[[i]]- .....}

__ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30

Re: [R] Running R from CD?

://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski

Re: [R] relative frequencies for hist()

://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED

Re: [R] lapply drops colnames

://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski

[R] Comparing correlated (paired) ROC curves (sensitivities).

Hi! I am looking for functions which I can use to compare correlated ROC curves, or even better correlated (paired - obtained from the same data with different measures) sensitivities given FP rates. Eryk Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63

[R] as(obj,matrix)

Hi! Here a simple example. setClass(myclass ,representation(info=character) ,contains=matrix ) rownames(dd)-c(a,b) tt-new(myclass,dd) #the source of pain. as(tt,matrix)-matrix(1,3,3) Error: length of dimnames [1] not equal to array extent Is there a different way to do what I would like to

Re: [R] as(obj,matrix)

The definition of dd is. dd-matrix(0,2,2) *** REPLY SEPARATOR *** On 7/28/2004 at 4:12 PM Adaikalavan Ramasamy wrote: On Wed, 2004-07-28 at 15:55, Wolski wrote: Hi! Here a simple example. setClass(myclass ,representation(info=character) ,contains=matrix

[R] ordering of levels.

Hi! Have the following factors with the following levels. tmp$norm [1] rank rank rank rank rank log log log rank sqrt sqrt sqrt log log rank [16] rank rank sqrt sqrt sqrt sqrt log log log log sqrt none none none none [31] none none none none sqrt none Levels: log none rank sqrt I would

Re: [R] ordering of levels.

Hi! Thanks a lot. Eryk *** REPLY SEPARATOR *** On 7/26/2004 at 2:07 PM Sundar Dorai-Raj wrote: Wolski wrote: Hi! Have the following factors with the following levels. tmp$norm [1] rank rank rank rank rank log log log rank sqrt sqrt sqrt log log rank [16] rank rank

Re: [R] binning a vector

Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski __ [EMAIL

Re: [R] retrieve rows from frame assuming criterion

__ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73

[R] biplot identify

of the points. I have noticed that both biplot.prcomp and biplot.default does a lot of scaling. So has anyone a function like identify.prcomp please? Is it possible? Sincerely Eryk Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v

[R] 2 images with 2 color scales on one graphic device. How to get it?

levelplot to use only a half of the graphic device? Is there a function like image which provides the color scale and is working with par(mfrow, mfcol? Eryk Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219

Re: [R] Sort a data frame

Hi Lets assign your data frame to the variable yourdf then: yourdf[ , order( yourdf$year ) ] should sort it. For decreasing increasing sorting see ?order Sincerely Eryk. *** REPLY SEPARATOR *** On 20.07.2004 at 09:51 Luis Rideau Cruz wrote: Hi all I have the next data

Re: [R] vectorizing a matrix computation

the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski

Re: [R] (no subject)

://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL

Re: [R] variable definition

Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski __ [EMAIL PROTECTED] mailing list

Re: [R] Problem with the grep function

you Julie AUBERT __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic

Re: [R] Problem with the grep function

do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED]---W-Whttp

[R] Vertical text in plot

Hallo! Would like to add vertical text labels to a histogram. Was trying with las but without sucess. I am using the standard histogram. This is what I was trying. hist(resS2$sam,breaks=seq(0,1,0.01),col=3,border=0,freq=F,add=T,xlim=c(0,1)) text(quantile(resS2$dif,0.005),5, 0.5% FP rate

Re: [R] Vertical text in plot

Hi Mark! Just wonderfull. Was searching in the par documention file for vertical, angle, horizontal. The word rotation was out of my mind. Thanks a lot. Eryk *** REPLY SEPARATOR *** On 7/2/2004 at 12:52 PM Marc Schwartz wrote: On Fri, 2004-07-02 at 12:45, Wolski wrote

Re: [R] RMySQL

Hi! I was installing RMySQL quite recently on Linux and had some troubles which I was able to solve. So maybee I can help you. But first I have to know what error messages you are getting on which operating system you are installing, which version of the package. Sincerely Eryk ***

Re: [R] Question about mesurating time

?system.time *** REPLY SEPARATOR *** On 30.06.2004 at 10:59 zze-PELAY Nicolas FTRD/DMR/BEL wrote: Hello , Is there any function to mesurate the duration of a procedure (like tic and toc in matlab) ? Tic Source(procedure.R) Toc (toc is the duration between the execution of

[R] camberra distance?

Hi! Its not an R specific question but had no idea where to ask elsewhere. Does anyone know the orginal reference to the CAMBERA DISTANCE? Eryk. Ps.: I knew that its an out of topic question (sorry). Can anyone reccomend a mailing list where such questions are in topic?

RE: [R] camberra distance?

0427-50-2353 Fax: 61-8-9333-6121 Email: [EMAIL PROTECTED] URL: www.cmis.csiro.au/envir -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] Behalf Of Wolski Sent: Tuesday, 29 June 2004 3:45 PM To: R Help Mailing List Subject: [R

Re: [R] PAM clustering: using my own dissimilarity matrix

Hi! If your x is your symmetric matrix containing the distances than cast it to an dist object using as.dist. ?as.dist. Sincerely Eryk *** REPLY SEPARATOR *** On 29.06.2004 at 18:28 Hans Körber wrote: Hello, I would like to use my own dissimilarity matrix in a PAM

Re: [R] How to determine the number of dominant eigenvalues in PCA

Hi! There is a chapter in the book from Härdl about the interpretation of PCs available online. http://www.quantlet.com/mdstat/scripts/mva/htmlbook/mvahtmlframe93.html About determining the number of dominant eigenvalues is a chapter in book of A. Handl (available online but in german.)

[R] RMysql installation problem.

Hi! I am trying to install the RMySQL package. The installation stops with the following error message. path to mysql is set. setenv PKG_CPPFLAGS /home/arabidopsis/software/R1.9.1/linux/mysql/include setenv PKG_LIBS /home/arabidopsis/software/R1.9.1/linux/mysql/lib R CMD INSTALL

Re: [R] RMysql installation problem. / Problem solved!

It works with: R CMD INSTALL --configure-args='--with-mysql-dir=/home/arabidopsis/software/R1.9.1/linux/mysql/' RMySQL_0.5-5.tar.gz dunno why. Sorry for the annoyance. Eryk *** REPLY SEPARATOR *** On 28.06.2004 at 19:55 Wolski wrote: Hi! I am trying to install

Re: [R] Installing on Windows packages build on Unix

://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED

[R] Initializing SparseM matrix matrix.csc

Hi! Would like to initialize a huge matrix.csc (Pacakge SparseM) with all elements 0 and afterwards set a few alements nonzero. The matrix which I like to allocate is so huge that I can not use A - matrix(a,n1,p) before: A.csr - as.matrix.csc(A) because I can not allocate such a huge matrix A.

Re: [R] How to order a vector

. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED]---W-Whttp://www.molgen.mpg.de/~wolski __ [EMAIL PROTECTED] mailing list

Re: [R] installing my own package - problems with INDEX

/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0049-30-83875219 / \ mail: [EMAIL PROTECTED]---W-W

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