Dear R People:
Is there a binary version for rorca, please?
Thanks,
Laura
mailto: [EMAIL PROTECTED]
R Windows 1.9.0
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https://www.stat.math.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide!
Dear Spencer,
In Dr. Gray's course notes for Advanced Statistical Computing
(Appendix of Chapter 6) there are some functions for computing
abscissas and corresponding weights for several Gaussian integration
rules:
http://icommons.harvard.edu/~hsph-bio248-01/Lecture_Notes/
I hope this helps.
Hi,
I want to know which distance is using in the function kmeans
and if we can change this distance.
Indeed, in the function pam, we can put a distance matrix in
parameter (by the line pam-pam(dist(matrixdata),k=7) ) but
we can't do it in the function kmeans, we have to put the
matrix of data
Hello yet again!
I'm trying to build a package.
The Rcmd build works fine.
But the Rcmd check produces an error because I don't have latex on my
laptop.
Any suggestions, please?
R Windows 1.9.0
thanks again,
Laura
_
Learn to
Martin Maechler schrieb:
Matthias == Matthias Kohl [EMAIL PROTECTED]
on Thu, 27 May 2004 14:01:51 +0100 writes:
Matthias Hi all, in the help for RClassUtils I found the
Matthias expression privileged slots in function
Matthias checkSlotAssignment with the explanation:
Laura Holt wrote:
Hello yet again!
I'm trying to build a package.
The Rcmd build works fine.
But the Rcmd check produces an error because I don't have latex on my
laptop.
Any suggestions, please?
Rcmd check --help tells you that you can use the option:
--no-latexdo not run LaTeX on
n.bouget wrote:
Hi,
I want to know which distance is using in the function kmeans
and if we can change this distance.
Indeed, in the function pam, we can put a distance matrix in
parameter (by the line pam-pam(dist(matrixdata),k=7) ) but
we can't do it in the function kmeans, we have to put the
Laura Holt wrote:
Dear R People:
Is there a binary version for rorca, please?
Given I recall correctly, I tried to build rorca for Windows one or two
years ago without success. But maybe Tony (In this context I recall that
I'm still owing him a pizza) knows of a binary?
Uwe Ligges
Thanks,
On Fri, 28 May 2004, Uwe Ligges wrote:
n.bouget wrote:
Hi,
I want to know which distance is using in the function kmeans
and if we can change this distance.
Indeed, in the function pam, we can put a distance matrix in
parameter (by the line pam-pam(dist(matrixdata),k=7) ) but
we
On Fri, May 28, 2004 at 09:04:53AM +0200, Dimitris Rizopoulos wrote:
Dear Spencer,
In Dr. Gray's course notes for Advanced Statistical Computing
(Appendix of Chapter 6) there are some functions for computing
abscissas and corresponding weights for several Gaussian integration
rules:
n.bouget wrote:
Hi,
I want to know which distance is using in the function kmeans
and if we can change this distance.
Indeed, in the function pam, we can put a distance matrix in
parameter (by the line pam-pam(dist(matrixdata),k=7) ) but
we can't do it in the function kmeans, we
Am 27.05.2004 22:11:04 schrieb(en) Berton Gunter:
Your question does not make a lot of sense to me. If you only want
to compute distances between mothers and THEIR daughters, you
cannot have a matrix, because different mothers have different
numbers of daughters.
Thats true, but we took
Hello,
I'm trying to build a package and the R CMD build works fine.
The R CMD check produces an error, because no latex is found.
But I have MikTeX installed and it works fine (only?) in combination with WinEdt.
After reinstallation of MikTeX (no errors) I have the same problem. I´m not sure
Am 27.05.2004 22:17:04 schrieb(en) Patrick Burns:
First comment: F is a bad name to use for an object as it
masks the commonly used meaning of FALSE.
Oh, thanks, I just took F because 'Fragebogen' is such a long variable.
But you are right, I will change that.
You'll probably get some better
It was an (for me not understandable) problem on miktex
I´m solving my problem, by copying ..\texmf\miktex\bin\etex.exe to latex.exe I´m
wondering that now R CMD check works now.
Sorry, for my question to R help.
Matthias
-Ursprüngliche Nachricht-
Von: TEMPL Matthias
Gesendet:
Dear List,
I am struggling understanding S4 classes. For example, when GLMM
summary(glmmML( whatever))
outputs the following line:
Estimate Std. Error DF z value Pr(|z|)
(Intercept)0.856 0.319 452.68 0.0073
How do I access the Pr column?
Dieter
On Fri, 2004-05-28 at 00:36, José Cláudio Faria wrote:
Dears friends,
I have been translating and extended, with educational porposes only, the available
material in the www
(http://zoonek2.free.fr/UNIX/48_R/all.html) Statistcs avec R for the Portuguese of
Brazil.
I consider the
[EMAIL PROTECTED] wrote:
n.bouget wrote:
Hi,
I want to know which distance is using in the function kmeans
and if we can change this distance.
Indeed, in the function pam, we can put a distance matrix in
parameter (by the line pam-pam(dist(matrixdata),k=7) ) but
we can't do it in the function
Dieter == Dieter Menne [EMAIL PROTECTED]
on Fri, 28 May 2004 11:04:13 +0200 writes:
Dieter Dear List, I am struggling understanding S4
Dieter classes. For example, when GLMM
Dieter summary(glmmML( whatever))
Dieter outputs the following line:
Dieter
Martin Maechler wrote:
Dieter == Dieter Menne [EMAIL PROTECTED]
on Fri, 28 May 2004 11:04:13 +0200 writes:
Dieter Dear List, I am struggling understanding S4
Dieter classes. For example, when GLMM
Dieter summary(glmmML( whatever))
Dieter outputs the following line:
Dieter
Martin,
s - summary(glmmML( whatever))
s ## to give the above
str(s) ## to show the internal structure
str() is my favorite, it's essentially how I learned R.
It was no problem to find my way in nlme, but still lost in lme4.
Uwe Liggges wrote:
Well, I wonder what Dieter Menne
n\ == n\ bouget n
on Fri, 28 May 2004 09:37:35 +0200 writes:
n\ Hi, I want to know which distance is using in the
n\ function kmeans and if we can change this distance.
n\ Indeed, in the function pam, we can put a distance
n\ matrix in parameter (by the line
n\
On Fri, 28 May 2004, Martin Maechler wrote:
n\ == n\ bouget n
on Fri, 28 May 2004 09:37:35 +0200 writes:
n\ Hi, I want to know which distance is using in the
n\ function kmeans and if we can change this distance.
n\ Indeed, in the function pam, we can put a distance
Am 27.05.2004 22:43:02 schrieb(en) Jonathan Baron:
On 05/27/04 21:58, Martin Klaffenboeck wrote:
Hello,
Im reading through some manuals, but I cannot find my answer.
I have a file containing many data:
Vpn CodeFamily Age F1 F2 ... F17
1 1 M 46 1 2
n.bouget wrote:
Hi,
I want to know which distance is using in the function kmeans
and if we can change this distance.
Indeed, in the function pam, we can put a distance matrix in
parameter (by the line pam-pam(dist(matrixdata),k=7) ) but
we can't do it in the function kmeans, we have to put the
I don't exactly understand what you do, could you show me the
program that you execute to do that?
n.bouget wrote:
Hi,
I want to know which distance is using in the function kmeans
and if we can change this distance.
Indeed, in the function pam, we can put a distance matrix in
Dear useRs,
there has been some interest on this list into material about the
presentations at useR! 2004.
The slides from the keynote lectures are now available from the
conference web page at
http://www.ci.tuwien.ac.at/Conferences/useR-2004/
thanks to the R-core team members who were
Thomas Petzoldt wrote:
n.bouget wrote:
Hi,
I want to know which distance is using in the function kmeans
and if we can change this distance. Indeed, in the function pam, we
can put a distance matrix in
parameter (by the line pam-pam(dist(matrixdata),k=7) ) but
we can't do it in the function
Gavin Simpson wrote:
...
An R example is given in the help file of decostand() in Jari Oksanen's
vegan library for two of the transformations mentioned above.
^^^
Pre-empting the usual response about proper terminology, I of course
meant package not library.
Gav
--
Hi!
Normally you are building R packages using
cd c:\Program Files\R\rw1081\src
R CMD build fatigue
Sincerely.
*** REPLY SEPARATOR ***
On 5/11/2004 at 6:32 PM Livingstone, Paul wrote:
Hi All,
I'm using R1.8.1 on Windows XP.
I'm having trouble producing an R library from
On Thu, 27 May 2004 22:55:20 +0200, Torsten Steuernagel
[EMAIL PROTECTED] wrote :
2. Is it true
that one can gain execution speed by accessing slots using the
function slots(object,name,check=FALSE)-value would speed up
execution?
Try this:
get(@-)
function (object, name, value)
{
I am generating a simple x,y plot to show geographical positions where
point data has been taken. Rather than plot a graph and lay points on top
I've opted to generate the map from the point data, ie plot(-x,-y). This
works fine, though I am wanting to label each point 1:20 and have a key
I am trying to fit regression models type II with R, but it seems to me
that most (all) of the linear model functions are for type I regressions.
Does anyone knows whether type II regressions functions exist in R.
Benjamin
--
Benjamin Planque
IFREMER
Laboratoire d'Ecologie Halieutique
BP 21105
Laura,
For your axis issues, look at plotting without axes [plot(,axes=F) and
then see ?axis for making them on your own. As for labeling your data, look
at ?points and ?text.
Sean
On 5/28/04 8:27 AM, Laura Quinn [EMAIL PROTECTED] wrote:
I am generating a simple x,y plot to show
Hello List
I'm working on a combinatoric problem in which the object is to
minimize the badness() of a vector. I think this class of problem is only
soluble by optim() using method=SANN.
The badness() of anything is = 0, and when I've found a solution with
zero badness, I want optim() to stop
[EMAIL PROTECTED] wrote:
I don't exactly understand what you do, could you show me the
program that you execute to do that?
I did such things sometimes ago, so the following is (as usual) without
warranty. There are several methods, e.g. using Choleski factorization,
singular value decomposition
I have a list of vectors
$A
AB BC CD
$B
GF HG FH FJ
and I want to convert it into a dataframe of form
A AB
A BC
A CD
B GF
B HG
B FH
B FJ
Just can't quite come up with a nice R solution for it.
Thanks,
Sean
__
[EMAIL PROTECTED] mailing list
Hallo!
x-unlist(yourlist)
names(x) # maybee you have to postprocess the names a little
dataframe(names(x),x)
Sincerely
Eryk
*** REPLY SEPARATOR ***
On 5/28/2004 at 8:49 AM Sean Davis wrote:
I have a list of vectors
$A
AB BC CD
$B
GF HG FH FJ
and I want to convert it into a
R L - list(A=c(AB,BC,CD),B=c(GF,HG,FH,FJ))
R stack(L)
values ind
1 AB A
2 BC A
3 CD A
4 GF B
5 HG B
6 FH B
7 FJ B
Sean Davis sdavis2 at mail.nih.gov writes:
:
: I have a list of vectors
:
: $A
: AB BC CD
:
: $B
: GF HG FH FJ
:
: and I want to
Hi!
Are there any simple examples for SJAVA please?
Thanks,
Laura
R Version 1.9.0 Windows
_
Is your PC infected? Get a FREE online computer virus scan from McAfee®
Security. http://clinic.mcafee.com/clinic/ibuy/campaign.asp?cid=3963
Hallo Laura!
What I have heard at UseR there are no stable running SJava at the Windows platform. (
I wish that I am wrong!) I knew that Simon Urbanek is using and developing a java
interface to R.
google: simon urbanek
Sincerely
Eryk
*** REPLY SEPARATOR ***
On 5/28/2004 at
Hi!
The simplest way to find the document is
?checkSlotAssignmen
A function which is described there and which Matthias Kohl mentioned in his e-mail
You will find it also using the html search form of the html documentation searching
for RClassUtils.
Its true that the document is a little
Hi,
like you I'm trying to use SJava and I meet with many difficulties.
I try to run examples from Calling R from Java written by Duncan Temple
Lang available from http://www.omegahat.org/SJava (there are many examples
on this web site).
Now I have an error that my R version is R 1.6.1 while I
On 05/28/04 12:21, Martin Klaffenboeck wrote:
Am 27.05.2004 22:43:02 schrieb(en) Jonathan Baron:
On 05/27/04 21:58, Martin Klaffenboeck wrote:
Hello,
Im reading through some manuals, but I cannot find my answer.
I have a file containing many data:
Vpn CodeFamily Age F1 F2
Dear list:
I am trying to merge two files together from output I get based on the coef() command.
Here is what I am running into.
I have two simple linear mixed models
mod1.lme-lme(math~year, data=sample, random=~year|childid/schoolid)
mod2.lme-lme(math~year, data=sample,
Søren Højsgaard [EMAIL PROTECTED] writes:
Dear all,
In the SASmixed package there is an example of an analysis of a split-plot
experiment. The model is
fm1Semi - lme( resistance ~ ET * position, data = Semiconductor, random = ~ 1 |
Grp)
where Grp in the Semiconductor dataset is
Uwe Ligges [EMAIL PROTECTED] writes:
Laura Holt wrote:
Dear R People:
Is there a binary version for rorca, please?
Given I recall correctly, I tried to build rorca for Windows one or
two years ago without success. But maybe Tony (In this context I
recall that I'm still owing him a pizza)
Dear FZ
In one way I have not problem...
The problem arise to establish the contrasts for 2 way with interactions and I desire
the SS of each one of the
contrasts.
Thanks,
Jos Cludio Faria
UESC/DCET
Brasil
73-634.2779
[EMAIL PROTECTED]
[EMAIL PROTECTED]
At 2:10 PM -0400 5/27/04, Barrowman, Nick wrote:
But is there any easy way to avoid this problem? It is confusing
and inconvenient that axis.POSIXct(1,d,format=f) and
axis.POSIXct(3,at=d,format=f) give seemingly contradictory scales.
In one case you provide the locations of the tick marks, in
I need to simulate from a random process and am not sure how to go
about it. The process is the probability of an event occuring between
a pair of points on a line. (This probability is between 0 and 0.5).
I have estimates of these probabilities for a series of points, their
standard errors and
SCO is grasping for straws. and is now gasping. vexatious lawsuits will only
drive so far before puttering out. eventually the curtain gets pulled back
on glorified attempts at racketeering. cheers.
Message: 76
Date: Thu, 27 May 2004 21:08:12 -0500
From: Deepayan Sarkar [EMAIL PROTECTED]
I am still unable to build a binary for R (linux Red Hat 9 distribution)
which would be self-consistent (without shared objects and use of
dynamics librairies).
I would be very grateful if someone could explain and/or help me...
so please set MAIN_LD as it suggests (and that's why I quoted
If I have a plot and I want to insert a bitmap in the same devicehow to do it?
Thank you
Luis Ridao Cruz
Fiskirannsóknarstovan
Nóatún 1
P.O. Box 3051
FR-110 Tórshavn
Faroe Islands
Phone: +298 353900
Phone(direct): +298 353912
Mobile: +298 580800
Fax:
My $.02 (sorry, couldn't resist).
This is but one skirmish in the whole vexatious battle on intellectual property
rights, which extends from software to many other venues, one of the most
interesting of which is patents on human genes. An example I heard on the radio
this morning was eHarmony.com
Dear all:
I meet a problem of apply function. I have a matrix called tb
tb
V1 V2 V3
1 0 3 1
2 1 4 0
3 0 3 0
4 0 4 0
5 0 3 1
6 1 4 1
7 1 1 0
8 1 3 0
9 0 1 1
10 0 3 1
I hope to get the number of row that match c(0,3,1)
I do this way:
length(apply(t(tb) = =
Hi!
?apply
...: optional arguments to 'FUN'.
you can pass more arguments to your function.
length(apply(tb,comare,c(0,3,1)))
Sincerely
Eryk.
*** REPLY SEPARATOR ***
On 5/28/2004 at 12:05 PM anoly wrote:
Dear all:
I meet a problem of apply function. I have a matrix called tb
On Fri, May 28, 2004 at 04:58:58PM +0100, Luis Rideau Cruz wrote:
If I have a plot and I want to insert a bitmap in the same devicehow to do it?
IIRC the pixmap package on CRAN helps with that.
Dirk
--
FEATURE: VW Beetle license plate in California
Luis Rideau Cruz wrote:
If I have a plot and I want to insert a bitmap in the same devicehow to do it?
Yesterday we have learned, how to load and plot jpeg images (see: Is it
possible to read jpeg files into R?) Now you need a way to insert this
into another figure. For this purpose the grid
Dirk Eddelbuettel wrote:
IIRC the pixmap package on CRAN helps with that.
Ah, I see, ?addlogo is much easier than grid in this case, as one sees
in a (slightly modified) version of the help example:
x - read.pnm(system.file(pictures/logo.ppm, package=pixmap)[1])
plot(sample(1:100))
for (i in
On 28-May-04 Brian Davenhall wrote:
I'm trying to generate a sequence of random integer values. I've
tried to combine the random (r) and the sequence (seq) functions
but this approach does not work. For example, if I use the
following command:
a - seq(1:100)
a
[1] 1 2 3 4 5
I am trying to put 3 dotcharts side-by-side with minimal space between
each. Each chart is for a different variable, but the vertical axes are
the same.
I want to have vertical axis labels on the lefthand chart but no
vertical axis labels on the other two. Plus, I would like very little
space
Using R 1.8.1, and the negative binomial glm implemented in MASS,
the default when using anova and a chi-square test is to divide the
deviance by the estimated dispersion. Using my UNIX version of S-plus (v
3.4), and the same MASS functions, the deviances are *not* divided by the
estimated
Hi!
I guess that it cant work. but maybee I am wrong.
I would like to define a function rbind.
rbind
function (..., deparse.level = 1)
{
which works only for objects of class Myclass
Is it possible to use something like
setMethod(rbind,signature(...=Myclass,deparse.level=numeric)
This gives an
Have a look at rbind.zoo in the zoo package for an example.
Wolski wolski at molgen.mpg.de writes:
:
: Hi!
:
: I guess that it cant work. but maybee I am wrong.
: I would like to define a function rbind.
: rbind
: function (..., deparse.level = 1)
: {
: which works only for objects of
I cross compiled it. If someone wants to donate a pre-configured
Windows computer to my research group, I could test it. Else, someone
else will have to. I can't.
It is http://www.analytics.washington.edu/~rossini/rorca/rorca.zip
best,
-tony
[EMAIL PROTECTED] (A.J. Rossini) writes:
Uwe
Am 28.05.2004 15:18:58 schrieb(en) Jonathan Baron:
Also the other things.
I have to test the hypothesis: Does a daugther answer the questions
(semantic differential) more equal the own mother and more different
to
the mothers of the other daugthers.
I don't think this is a trivial problem at
The intellectual property questions raised by the GNU General
Public License (GPL) are under active discussion in PDF Solutions, where
Sundar Dorai-Raj and I work. Sundar and I have recommended linking PDF
commercial software to R. However, we have to be careful how we do
this, because
Hi all,
I try to create an import library for using dll. Following the
instruction in the readme.package, I used the command lib /def:R.exp
/out:Rdll.lib, however, the error message showed Cannot open file
R.exp. I downloaded the source code R-1.9.0.tgz, but I can not find
R.exp. Thanks!
On Fri, 28 May 2004 11:52:58 -0600, Rui [EMAIL PROTECTED]
wrote :
Hi all,
I try to create an import library for using dll. Following the
instruction in the readme.package, I used the command lib /def:R.exp
/out:Rdll.lib, however, the error message showed Cannot open file
R.exp. I downloaded
Thanks to Andy Liaw, Marc Schwartz, Dimitris Rizopoulos and Tamas
Papp for quick replies. Before I sent the email, I found that it was
written by Jim Lindsey, but I could not find further information on him,
so I appreciate the links. Also, the Advanced Statistical Computing
course
I am having trouble with creating shared objects with Fortran files,
which use numerical libraries Lapack and Blas. I have read the section
in Writing R Extensions but could not find what I needed and I am not
at the stage to create a library.
What I did was
$R CMD SHLIB --output=car file1.f
I'm in San Francisco looking for a basic statistics course...
using R. I'll be using R for real work later on, so I'd prefer
not to have to do the coursework with some other software.
All leads are appreciated...
Thanks,
- JD
__
[EMAIL PROTECTED]
Dear List,
Please bear with a poor newbee, who might be doing everything
backwards (I was brought up in pure math).
I want to make a simple multi-linear regression on a set of
data. I did some expreiments, and if X is a 4 by 2 array and Y is a 4 by
1 array, I can do a linear
Hi!
In which library is this function?
I cant find it using help.search() on my R installation.
Eryk
*** REPLY SEPARATOR ***
On 5/28/2004 at 12:22 PM [EMAIL PROTECTED] wrote:
Hi All,
(I have a degree in math, but I am too embarassed to ask my colleagues,
so here goes:)
I
if I do R cross(v1, v2), I get .94. Huh?
Meant to say R crossprod(v1, v2)
Sorry
__
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https://www.stat.math.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Hi All,
(I have a degree in math, but I am too embarassed to ask my colleagues,
so here goes:)
I would like to get a vector normal (orthogonal) to a plane formed by
two other vectors. In matlab I do this:
v1 = [.4, .6, .8]; v2 = [.9, .7, .2]; nn = cross(v1,v2) (gives ~[-.48,
.65, -.24]
if I
[EMAIL PROTECTED] wrote:
Hi All,
(I have a degree in math, but I am too embarassed to ask my colleagues,
so here goes:)
I would like to get a vector normal (orthogonal) to a plane formed by
two other vectors. In matlab I do this:
v1 = [.4, .6, .8]; v2 = [.9, .7, .2]; nn = cross(v1,v2) (gives
Uwe Ligges wrote:
[EMAIL PROTECTED] wrote:
Hi All,
(I have a degree in math, but I am too embarassed to ask my
colleagues, so here goes:)
I would like to get a vector normal (orthogonal) to a plane formed by
two other vectors. In matlab I do this:
v1 = [.4, .6, .8]; v2 = [.9, .7, .2]; nn =
W is looking for the vector cross product (a specifically
three-dimensional object important in physics and engineering). The
crossproduct() function provides a matrix product so that crossprod(x,y)
is t(x)%*%y, something completely different.
For the three-dimensional case you could define the
Dear Thomas,
In fact, the more common way to fit a linear regression in R is to use
variables in a data frame (or list) along with a model formula specifying
the model. All of this is explained in the Introduction to R manual that is
distributed with R: see, in particular, Sec. 6.3 on data
Thomas Lumley tlumley at u.washington.edu writes:
:
: W is looking for the vector cross product (a specifically
: three-dimensional object important in physics and engineering). The
: crossproduct() function provides a matrix product so that crossprod(x,y)
: is t(x)%*%y, something completely
I'm trying to use GLMM in library(lme4), R 1.9.0pat, updated just
now. I get an error message I can't decipher:
library(lme4)
set.seed(1)
n - 10
N - 1000
DF - data.frame(yield=rbinom(n, N, .99)/N, nest=1:n)
fit - GLMM(yield~1, random=~1|nest, family=binomial, data=DF,
Not sure what you intend with regard to length but to get a logical
vector indicating which rows equal a particular vector:
f1 - function(tb, row) apply(tb,1,function(x)all(x==row))
# or without using apply:
f2 - function(tb, row) colSums( abs( (t(tb) - row) ) ) == 0
# or in terms of a
I'm getting a strange error from glmmPQL. Consider the following
sample code:
set.seed(8)
N. - 1000
z - rnorm(N.)
pr.good - exp(-1e-4*exp(2+2*z))
quantile(pr.good)
DF. - data.frame(yield=rbinom(N., N., pr.good)/N.,
Offset=rep(-10, N.), nest=1:N.)
fit -
Is this the new experimental lme4 (version 0.6-x) ? If so, this is due
to an error in our use of method dispatch. It has been fixed in the
development version, and there should be a new release in a few days.
On Friday 28 May 2004 19:32, Spencer Graves wrote:
I'm trying to use GLMM in
To solve my own problem, it seems better to follow instructions in
Writing R Extensions to build a library. I am making progress.
Thanks,
Zhu Wang
Statistical Science Department
Southern Methodist University
Dallas, TX 75275-0332
On Fri, 2004-05-28 at 13:11, Zhu Wang wrote:
I am having
My thread broke as I write this at home and there were no new messages
on this subject after I got home. I hope this still reaches interested
parties.
There are several methods that find centroids (means) from distance
data. Centroid clustering methods do so, and so does classic scaling
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