Are you talking about the pdf() device? You never say so, but you do say
The font encoding error does not appear in the postscript
device driver, and it works fine.
This report is far too vague: what did you do and what reported the file
was corrupt? (Note that Acrobat reader is famous for
On Wed, 31 Aug 2005, Berwin A Turlach wrote:
G'day Nam-Ky,
NKN == Nam-Ky Nguyen [EMAIL PROTECTED] writes:
NKN I intend to burn some R CDs to colleagues in Vietnam. I want
NKN to put all binary files for base as well as contributed
NKN packages (for both Windows and Linux).
I
G'day Brian,
BDR == Prof Brian Ripley [EMAIL PROTECTED] writes:
BDR On Wed, 31 Aug 2005, Berwin A Turlach wrote:
available.packages() does not seem to have a type argument
according to its documentation, so I guess that even if it is
run under Windows that it returns a list
Berwin A Turlach [EMAIL PROTECTED] writes:
Thus, since Nam-Ky works on a Linux box (private e-mail) the commands
should be
On a Linux box, I would rather suggest using wget on the appropriate
CRAN directories (wget -r --no-parent http://etc.etc.etc/...) - unless
of course it is the download
Hi all
I've a continuous variable and I want to test (graphically, plotting
observed and theoretical distr, qqplot) whether it follows some formal
distribution. (some thing close to Ricci document : Fitting distributions
with R, Feb05).
The distribution I want to fit is a truncated Gamma at 1
Nam-Ky Nguyen schrieb:
Dear Rexperts,
I intend to burn some R CDs to colleagues in Vietnam. I want to put all
binary files for base as well as contributed packages (for both Windows
and Linux). It is very time consuming if I download files by files. Is
there a place a can buy a CD with all
On Tue, 30 Aug 2005, b wrote:
Solved the problem with the 'R' installation!
One of the processes that loads up on startup was
conflicting with it. It was a program called
Gameutil.exe which seems to enhance games by
altering display modes. For some reason a conflict
existed. Anyhow I dont
On Mon, Aug 29, 2005 at 08:08:53AM +0200, Bj?rn-Helge Mevik wrote:
It seems to me that what you are looking for, is some sort of
structured equation models (? la Lisrel). The pls package implements
partial least squares regression and principal component regression,
which is something
Dear list,
Are there any functions for calculating gamma (and its standard
error), which measures the association of ordinal factors in I x J
contingency table. I did a RSiteSearch but did not find any clues...
Thanks,
Wuming
__
Hello,
I'm very new in working with tcl/tk in R and have a problem which will
probably
sound silly to most of you.
Here is the code I have problems with:
readcelfiles - function()
{
require(tcltk)
tt - tktoplevel()
tkgrid(tklabel(tt,text=Choose a directory!))
OnOK - function()
{
On 08/31/05 17:46, Wuming Gong wrote:
Dear list,
Are there any functions for calculating gamma (and its standard
error), which measures the association of ordinal factors in I x J
contingency table. I did a RSiteSearch but did not find any clues...
You have to look for Goodman-Kruskal
deggle wrote:
Hello,
I'm very new in working with tcl/tk in R and have a problem which will
probably
sound silly to most of you.
Here is the code I have problems with:
readcelfiles - function()
{
require(tcltk)
tt - tktoplevel()
tkgrid(tklabel(tt,text=Choose a directory!))
On Wed, 31 Aug 2005, Philippe Grosjean wrote:
deggle wrote:
Hello,
I'm very new in working with tcl/tk in R and have a problem which will
probably
sound silly to most of you.
Here is the code I have problems with:
readcelfiles - function()
{
require(tcltk)
tt -
Jonathan Baron [EMAIL PROTECTED] writes:
On 08/31/05 17:46, Wuming Gong wrote:
Dear list,
Are there any functions for calculating gamma (and its standard
error), which measures the association of ordinal factors in I x J
contingency table. I did a RSiteSearch but did not find any
Is it possible to use delta method to evaluate the standard error of
Goodman-Kruskal gamma and then Wald test to evaluate the significance
of association?
Wuming
On 31 Aug 2005 13:42:27 +0200, Peter Dalgaard [EMAIL PROTECTED] wrote:
Jonathan Baron [EMAIL PROTECTED] writes:
On 08/31/05
Prof Brian Ripley wrote:
On Wed, 31 Aug 2005, Philippe Grosjean wrote:
deggle wrote:
Hello,
I'm very new in working with tcl/tk in R and have a problem which will
probably
sound silly to most of you.
Here is the code I have problems with:
readcelfiles - function()
{
require(tcltk)
tt
On Wed, 31 Aug 2005, Duncan Murdoch wrote:
Prof Brian Ripley wrote:
On Wed, 31 Aug 2005, Philippe Grosjean wrote:
deggle wrote:
Hello,
I'm very new in working with tcl/tk in R and have a problem which will
probably
sound silly to most of you.
Here is the code I have problems
On 8/31/2005 8:57 AM, Prof Brian Ripley wrote:
On Wed, 31 Aug 2005, Duncan Murdoch wrote:
Prof Brian Ripley wrote:
On Wed, 31 Aug 2005, Philippe Grosjean wrote:
deggle wrote:
Hello,
I'm very new in working with tcl/tk in R and have a problem which will
probably
sound silly to
I've been trying to play catch-up on R-help since DSC2005. This one must
have slipped through...
This is what I'd do:
iris.sub - subset(iris, Species %in% c(setosa, virginica))
iris.sub$Species - factor(iris.sub$Species)
That last line drops the empty level in the factor. You can then run
Hi,
I have built R (current development version) and BioConductor 1.7
with portland group compiler on a AMD Opteron.
When I ran qc assessment on Affymetrix latin square data set, I got the
following output,
Loading required package: affy
Loading required package: Biobase
Loading required
Duncan Murdoch wrote:
On 8/31/2005 8:57 AM, Prof Brian Ripley wrote:
On Wed, 31 Aug 2005, Duncan Murdoch wrote:
Prof Brian Ripley wrote:
On Wed, 31 Aug 2005, Philippe Grosjean wrote:
deggle wrote:
Hello,
I'm very new in working with tcl/tk in R and have a problem which
will
Dear R users,
I have a data set of 25 cases with 150-160 explanatory variables(the
number of which depends on what I choose from 200 odd digitalized spectrum
strength numbers) and one dependent variable(a sensory test result). My
natural choice is to work on a principal component analysis using
Hi Jennifer,
I'm moving this over to the bioconductor mail list since we are
discussing Bioconductor packages, that would be the best place for the
discussion at this point. Please subscribe and reply there.
A couple quick comments:
1. You do realize BioC 1.7 is the current devel version,
You do have to load optional packages in each R session. See
?require
But you can automate the loading; see
?Startup
-Don
At 6:46 PM +0200 8/30/05, Mag. Ferri Leberl wrote:
I have installed package xtable with
su -c 'R CMD INSTALL xtable'
and got this promising feedback:
* Installing
I was wondering why this loop doesn't work!
for (i in 1:k)
fnTr[i] - function (p) 0.5* sum ( n*log(2*pi) - log(sd(i)^2)
+(logitp(i)-p)^2/sd(i)^2 )
outTr[i]- nlm (fnTr[i],p=c(10),hessian=TRUE)
minimumTr[i] - outTr[i]$minimum
valueTr[i] - outTr[i]$estimate
list
Hathaikan Chootrakool wrote:
I was wondering why this loop doesn't work!
for (i in 1:k)
fnTr[i] - function (p) 0.5* sum ( n*log(2*pi) - log(sd(i)^2)
+(logitp(i)-p)^2/sd(i)^2 )
outTr[i]- nlm (fnTr[i],p=c(10),hessian=TRUE)
minimumTr[i] - outTr[i]$minimum
valueTr[i] -
Hello,
I wish to learn how to extract best linear unbiased predictor values from a
linear mixed model of repeated measures on individuals which has a random error
structure (random =~ 1|individual).
Thanks for your time,
Kind regards
Matt
--
Matt Robinson
Institute of Evolutionary Biology
Use the ranef() command
ranef(fm1, level=1)
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Matt Robinson
Sent: Wednesday, August 31, 2005 12:26 PM
To: r-help@stat.math.ethz.ch
Subject: [R] extrating BLUP values from linear mixed models
Hello,
I wish
Hi folks,
I am planning to write some more time-consuming matrix manipulations
in c++. What is the experience with the existing c++ matrix
libraries? Do you have some recommendations? Are some libraries more
compatible with R than the others?
All suggestions welcome!
Best,
Ott
Hi, I'm trying to latex part of my R- code and don't know where to find the
sinput package to include in my version of miktex (I have the LINUX version
handy, but need also the Windows one) Any idea? (sorry it is not really a R
question)
Thanks
Isotta
Dear R-users,
Does anybody know how to construct a block-diagonal matrix (with the blocks
being different matrixs, concerning the dimension and the values) ?
I would like to know also if there is any package that generates values from a
multivariate skew normal distribution.
Thanks all,
Dear R-users,
Does anybody know how to construct a block-diagonal matrix (with the blocks
being different matrixs, concerning the dimension and the values) ?
I would like to know also if there is any package that generates values from a
multivariate skew normal distribution.
Thanks all,
The Excel 'database' I am pulling from mixes multiple character
indicators for different kinds of non-numeric results in the same column
as the numeric values. A simple sqlFetch turns all of the character
indicators into NAs. I would like to pull in all of the Excel data as
character so that I can
Hi,
I used Meschach: http://www.math.uiowa.edu/~dstewart/meschach/
However, it is written in C. The API is strong. I used the same API and
trimmed down the functionality, as well. Both worked for me.
IBM Developworks has an article on the subject Matrix libraries for C
and C++:
On 8/31/2005 12:57 PM, Isotta Felli wrote:
Hi, I'm trying to latex part of my R- code and don't know where to find the
sinput package to include in my version of miktex (I have the LINUX version
handy, but need also the Windows one) Any idea? (sorry it is not really a R
question)
If you
For your first question, here's a function originally posted by Ben Bolker,
with modification by Rich Raubertas:
blockdiag - function (x, ...)
{
if (!is.list(x))
x - list(x)
args - list(...)
if (length(args) 0)
args - c(x, args)
else args - x
idx -
If you have several different versions of R installed, you might want to use
a script like this one, which should work on (at least) 1.9.1 and newer.
script
#!/bin/sh
echo ##
echo ## This script will attempt to install all available R packages
echo ## from the package repositories:
Dear list,
I have been trying to reproduce the scripts of the MASS library and I have
found a problem when trying to reproduce the code in 12.4, with the use of
neural networks and the function b1:
b1 - function(Z, ...)
{
zp - Z[,3] - pmax(Z[,2], Z[,1])
contour(xp/log(10),
I'm doing bwplot(x ~ y | z, ...) with lattice, but would like the
z-labels to appear to the *side* of each bwplot, rather than on top...
is this possible? The main reason is that my bwplots are horizontal,
and as such can be nicely squished in the vertical axis (big
space-saver when including in
* Ott Toomet [EMAIL PROTECTED] [2005-08-31 19:53]:
I am planning to write some more time-consuming matrix manipulations
in c++. What is the experience with the existing c++ matrix
libraries? Do you have some recommendations? Are some libraries more
compatible with R than the others?
I think you might be able to use the horizontal argument to lattice to
rotate all your plots and squish them in the other dimension. (Though I
don't know whether you consider that a good outcome ...)
Hope this helps,
Matt Wiener
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL
Hi,
I've tried to run the multiple imputation for longitudinal data using Pan in
R.
The trimmed data consist 10 individuals across 4 time points.
Following the example in panex.R, I imputated the model with one y variable
and only random intercept.
It worked well.
The next step for me is to
Hi,
Can anyone please point to how to decompose BCCB
(Block-Circulant-Circulant-Block) matrices? I am interested in the derivations:
I do know that this can be numerically done using 2-dimensional FFTs.
Many thanks and best wishes!
__
Ott Toomet otoomet at ut.ee writes:
I am planning to write some more time-consuming matrix manipulations
in c++. What is the experience with the existing c++ matrix
libraries? Do you have some recommendations? Are some libraries more
compatible with R than the others?
A lng time ago, I
just one more thing. Why are you defining the function over and over
again...
On Wed, 31 Aug 2005, Hathaikan Chootrakool wrote:
I was wondering why this loop doesn't work!
for (i in 1:k)
fnTr[i] - function (p) 0.5* sum ( n*log(2*pi) - log(sd(i)^2)
This is probably a weird question but I need to know if there is a way...
I run an R batch job without saving the variables at each step to the
disk. Is there a way to invoke another session of R and link it to the
same environment for read only.
The problem is that I am running optim with
Dear Rexpert,
I would like to thank those who spend time answering my email on the
burning of a CD with all R binary files for Windows and Linux. I have
tried a couple of suggestions but have not been successful. I will pass
these suggestions to our system administrator and I am sure that he can
On 8/31/05, Wiener, Matthew [EMAIL PROTECTED] wrote:
I think you might be able to use the horizontal argument to lattice to
rotate all your plots and squish them in the other dimension. (Though I
don't know whether you consider that a good outcome ...)
I take it you mean to switch the layout
Dear R-users,
Does anybody know how to construct a block-diagonal matrix (with the blocks
being different matrixs, concerning the dimension and the values), without use
loops ?
Thanks all,
Caio
-
[[alternative HTML version
On 8/31/05, Maciej Kalisiak [EMAIL PROTECTED] wrote:
I take it you mean to switch the layout so that the conditioned
bwplots are side by side, narrow but tall, with horizontal=TRUE, and
Oops, I obviously meant horizontal=FALSE...
--
Maciej Kalisiak
[EMAIL PROTECTED]
Jean Eid wrote:
This is probably a weird question but I need to know if there is a way...
I run an R batch job without saving the variables at each step to the
disk. Is there a way to invoke another session of R and link it to the
same environment for read only.
The problem is that I am
Dear Sir/Madam
I would be pleased if anybody can help me. I'm using linear mixed model
(lme) function.I'm doing some simulation in my research and need to be
assigned variance components values during of my program. Specifically,
when I use lme function, I can get some information by use
Hi All,
My group is looking for any suggestions on what to purchase to
achieve the most powerful number crunching system that $50k can buy.
The main application that will be used is R so input on what hardware
benefits R most will be appreciated. The requirements are that it be
a
DATA MINING 2006 CONFERENCE sponsored by Salford Systems
San Diego, California: March 29 - March 31, 2006
The Conference will offer Real-World Case Study Presentations including
Cutting Edge Topics: Crime Prevention * Anti-Terrorism * Gambling *
Sports * Video Games * Food Water Science *
you can test out a live PPC 64 bit system here:
http://www.openpowerproject.org/us/signup.php
I have successfully built R in my home dir and compiled a few packages for it.
Here are the machines available:
Universität AugsburgPeking University
Server
Does the following answer your question:
set.seed(1)
z0 - rnorm(100)
p.z - 2*pnorm(-abs(z0))
sum(p.z0.05)
[1] 5
pchisq(sum(z0^2), 100, lower=FALSE)
[1] 0.917285
Some of the 100 (in this case) normal random deviates seem
statistically significant, even though the
Dear listers,
I would like to know whether a maximum size is set for data sets in R.
I'm planning on analysing data sets which have 33 points for a
sample. The response is from GCxGC output.
Also, with data analysis, is there a time-cost saving by performing the
analysis in Linux as
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