Re: [R] Re: [R-gui] Editor in R

2004-04-08 Thread Rory Campbell-Lange
On 07/04/04, Duncan Murdoch ([EMAIL PROTECTED]) wrote: S?ren H?jsgaard wrote: I'm on a PC and have VIM, a VI clone that I love. Is it possible and relatively easy to replace the Emacs editor with one like that which you already have? Does VIM have a way to run a program that uses stdin,

Re: [R] Time Varying Coefficients

2004-04-08 Thread Highland Statistics Ltd.
That is because the Kalman filter is only an estimation method. You will have to specify the matrices A and C in: y_t = A_t * x_t + noise_t x_t = C *x_t-1 + noise_t where you plug the explanatory variables in A_t. The Kalman filter will then give you estimates of the state vector

[R] lines and glm

2004-04-08 Thread Jan P. Smit
Dear R-helpers, I'm a beginner using R 1.8.1 on Windows 2000. I'm trying to replicate some examples in Franses' Paap's Quantitative Models in Marketing Research. t - 1:1000 e1 - rnorm(1000) e2 - rnorm(1000) x - 0.0001*t+e1 y2 - -2+x+e2 y - ifelse(y20,1,0) plot(x, y, pch = 16, col =

Re: [R] lines and glm

2004-04-08 Thread Uwe Ligges
Jan P. Smit wrote: Dear R-helpers, I'm a beginner using R 1.8.1 on Windows 2000. I'm trying to replicate some examples in Franses' Paap's Quantitative Models in Marketing Research. t - 1:1000 e1 - rnorm(1000) e2 - rnorm(1000) x - 0.0001*t+e1 y2 - -2+x+e2 y - ifelse(y20,1,0) plot(x, y, pch =

R: [R] lines and glm

2004-04-08 Thread Guazzetti Stefano
You probably mean something like: ti - 1:1000 e1 - rnorm(1000) e2 - rnorm(1000) x - 0.0001*ti+e1 y2 - -2+x+e2 y - ifelse(y20,1,0) plot(x, y, pch = 16, col = darkblue, main = expression(paste(Scatter diagram of , italic(y[t]), against , italic(x[t]))), xlab =

[R] nlme on Windows 2000 (v1.8.1)

2004-04-08 Thread Kent Holsinger
I have a problem with nlme on Windows 2000, and I'm having a devil of a time determining whether the problem is with my computer or with something in R. I'm running v1.8.1 on a Dell Pentium III with 512MB of RAM and all of the recommended Windows 2000 updates applied. If I use Rterm, I can run

Re: [R] getting data frame rows out of a by object

2004-04-08 Thread Douglas Bates
Ed L Cashin [EMAIL PROTECTED] writes: Julian Taylor [EMAIL PROTECTED] writes: ... You are better off using other tools to give you the right subsets. Try d - do.call(rbind, lapply(split(d, factor(paste(d$a, d$b, sep = ))), function(el) el[el$c ==

Re: [R] R on MacOS X

2004-04-08 Thread Martin Maechler
Richard == Richard A O'Keefe [EMAIL PROTECTED] on Thu, 8 Apr 2004 16:48:05 +1200 (NZST) writes: Richard I just got a G4 running MacOS 10.3 today, so I Richard immediately downloaded R from CRAN. good move; one of the first thing a new computer needs, (just after emacs) ;-)

Re: [R] R on MacOS X

2004-04-08 Thread Peter Dalgaard
Martin Maechler [EMAIL PROTECTED] writes: Richard a designated sysadmin, which I'm not. Is there any Richard alternative to downloading a source distribution Richard and doing the classic ./configure;make;make install Richard waltz? yes, there's always been. You have

[R] Expected Mean Squares

2004-04-08 Thread Moore, William G
I am an applied statistician new to R, and I was wondering if R can calculate expected mean squares for unbalanced mixed models. Any help would be appreciated. Thanks, Bill Moore [[alternative HTML version deleted]] __ [EMAIL PROTECTED]

[R] plot help

2004-04-08 Thread Pierre Clauss
Hie! I do not manage to make several plots on a same graph ( for example two densities on the same graph ) thanks for the answer Pierre Clauss xxx Ce message et toutes les pièces jointes (ci - apres le \message\ ) sont établis a l'attention

Re: [R] plot help

2004-04-08 Thread TEMPL Matthias
Hello! This works: hist(rnorm(100, mean = 20, sd =12), xlim=range(0,100), ylim=range(0,50)) par(new = TRUE) hist(rnorm(100, mean = 88, sd = 2), xlim=range(0,100), ylim=range(0,50)) Matthias Templ -Ursprüngliche Nachricht- Von: Pierre Clauss [mailto:[EMAIL PROTECTED] Gesendet:

Re: [R] getting data frame rows out of a by object

2004-04-08 Thread Ed L Cashin
Douglas Bates [EMAIL PROTECTED] writes: ... The point is that factor(paste(...)) returns a factor with length of nrow(d) and with factor levels determined by the combination of levels of a and b (provided that you don't get ambiguities as described above). The split function does not require

Re: [R] Expected Mean Squares

2004-04-08 Thread Douglas Bates
Moore, William G [EMAIL PROTECTED] writes: I am an applied statistician new to R, and I was wondering if R can calculate expected mean squares for unbalanced mixed models. Any help would be appreciated. Not that I know of but you can obtain REML or ML estimates of the parameters in an

Re: [R] getting data frame rows out of a by object

2004-04-08 Thread Douglas Bates
Ed L Cashin [EMAIL PROTECTED] writes: Douglas Bates [EMAIL PROTECTED] writes: ... The point is that factor(paste(...)) returns a factor with length of nrow(d) and with factor levels determined by the combination of levels of a and b (provided that you don't get ambiguities as described

Re: [R] getting data frame rows out of a by object

2004-04-08 Thread Ed L Cashin
Douglas Bates [EMAIL PROTECTED] writes: Ed L Cashin [EMAIL PROTECTED] writes: ... I think I need to look at the source of split when I have more time. ?split is probably a better place to start. I've read that, so I think I need more nitty gritty. [1] If you really want to be cautious you

[R] outliers

2004-04-08 Thread mike . campana
Dear all I would like to represent the outliers in the plot. These few outliers are much larger than the limit of 50 in the ylim-argument. plot(daten$month~daten$no,ylim=c(0,50)) I know that it is possible to introduce the information about the presence of outliers without changing the range

[R] lme, mixed models, and nuisance parameters

2004-04-08 Thread Scott Rifkin
I have the following dataset: 96 plots 12 varieties 2 time points The experiment is arranged as follows: A single plot has two varieties tested on it. With respect to time points, plots come in 3 kinds: (1) varietyA, timepoint#1 vs. variety B, timepoint#1 (2) varietyA timepoint #2 vs.

Re: [R] getting data frame rows out of a by object

2004-04-08 Thread Thomas Lumley
On Thu, 8 Apr 2004, Ed L Cashin wrote: One thing I notice is that I get funny row names using this method. I can change them back easily enough, though. I think you can use interaction() rather than the factor(paste()) approach interaction(d$a, d$b, drop=TRUE) gives a factor with one level

Re: [R] R on MacOS X

2004-04-08 Thread Thomas Lumley
On Thu, 8 Apr 2004, Peter Dalgaard wrote: Martin Maechler [EMAIL PROTECTED] writes: Richard a designated sysadmin, which I'm not. Is there any Richard alternative to downloading a source distribution Richard and doing the classic ./configure;make;make install Richard

RE: [R] More user-friendly error message needed.

2004-04-08 Thread Shin, Daehyok
Hi, Bob. As I said, I just begin to learn R, so I am not in a proper position to compare the languages. But, two things of R immediately captured my attention. Pro. A lot of standard libraries including a powerful visualization, like MATLAB. As a scientific programmer, I really missed this kind

Re: [R] R on MacOS X

2004-04-08 Thread Thomas Lumley
On Thu, 8 Apr 2004, Thomas Lumley wrote: I believe, though I haven't yet tried, that the 1.9.0 setup will be better. I think you can put the R Framework in ~/Library/Frameworks and then put R.app anywhere. Almost true. You need to edit R.app/Contents/MacOS/R and change the first line of

[R] socket clusters on snow dies easily

2004-04-08 Thread Rong-En Fan
hello, I'm using R 1.8.1 with the lastest snow package on FreeBSD 4.9. However, when I try to using socket clusters, it's very unstable. Sometimes it dies half way when I run parSapply(), sometimes it dies when cluster connection is idle. I create a socket cluster by following cmd

[R] Getting R to complete a web form

2004-04-08 Thread Corey Moffet
Dear R-Help, I am testing a web based erosion model and I would like to get R to submit the http requests. Now I make the requests manually and use R to extract the results by scan()ing a url() connection. It would be nice if I could fully automate the process. Any ideas/examples? The model

Re: [R] socket clusters on snow dies easily

2004-04-08 Thread Luke Tierney
If you absolutely have to use the socket approach you will probably have to track down the particular reason for this failure in your environment by looking at what is going on under the hood and checking the pieces. The master sets up a server socket, the slave noted connect to that socket, and

Re: [R] socket clusters on snow dies easily

2004-04-08 Thread A.J. Rossini
I don't think the socket stuff is as well tested as PVM and MPI. We've had a few problems with PVM via rpvm in the past, but I've not had problems recently (maybe this message will shake them out) and LAM-MPI via Rmpi seems a bit more stable (though perhaps less tested). best, -tony Rong-En

Re: [R] More user-friendly error message needed.

2004-04-08 Thread Gabor Grothendieck
From: Shin, Daehyok sdhyok at catchlab.org Con. Poor design for object-oriented programming, compared with Python. Have a look at oo.R package if you want a more traditional oo approach. __ [EMAIL PROTECTED] mailing list

[R] How to draw a tree?

2004-04-08 Thread Christian Hennig
Hi, I have run rpart to construct a regression tree. Is there any simple method to draw a nice picture of it, as it is usually done in books and paper to visualize the tree? Thank you, Christian *** Christian Hennig Fachbereich

Re: [R] More user-friendly error message needed.

2004-04-08 Thread A.J. Rossini
Shin, Daehyok [EMAIL PROTECTED] writes: Con. Poor design for object-oriented programming, compared with Python. I am quite sure that in the aspect of language design Python is far better than MATLAB and R. Simple, elegant, and powerful. S3 supports only a basic level of OOP, while S4

RE: [R] How to draw a tree?

2004-04-08 Thread Liaw, Andy
See ?post.rpart. That's probably as good as it'll get. You might also want to look at the maptree package on CRAN. HTH, Andy From: Christian Hennig Hi, I have run rpart to construct a regression tree. Is there any simple method to draw a nice picture of it, as it is usually done in

Re: [R] How to draw a tree?

2004-04-08 Thread Uwe Ligges
Christian Hennig wrote: Hi, I have run rpart to construct a regression tree. Is there any simple method to draw a nice picture of it, as it is usually done in books and paper to visualize the tree? Thank you, Christian ***

Re: [R] More user-friendly error message needed.

2004-04-08 Thread Gabor Grothendieck
Gabor Grothendieck ggrothendieck at myway.com writes: From: Shin, Daehyok sdhyok at catchlab.org Con. Poor design for object-oriented programming, compared with Python. Have a look at oo.R package if you want a more traditional oo approach. As several people have pointed out, this

[R] labels on dendograms

2004-04-08 Thread Francesca Demichelis
Hi, I like to add class labels on dendograms (as plot(agnesobject)). Is it possible to be done? Thank You in advance, francesca __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide!

[R] Discrete Choice Modeling modules for R??

2004-04-08 Thread charles . rosa
To all, Does anyone know whether there are any Discrete Choice Modeling modules for R?? Thanks, Charlie - Charles H. Rosa, Ph.D. Staff Research Engineer General Motors Corporation RD and Planning Mail Code 480-106-359 30500 Mound Rd Warren, MI 48090-9055 Tel/work/cell:

[R] Evaluating AIC

2004-04-08 Thread Bret Collier
R Users, I was just wondering if anyone has written a program (or if there is a package) out there that calculates the different derivations of AIC (e.g. AIC, AICc, QAIC, etc.) along with AIC differences (delta's), model likelihoods, Akaike weights and evidence ratio's (from Burnham and

[R] Why are Split and Tapply so slow with named vectors, why is a for loop faster than mapply

2004-04-08 Thread Brian . J . GREGOR
First, here's the problem I'm working on so you understand the context. I have a data frame of travel activity characteristics with 70,000+ records. These activities are identified by unique chain numbers. (Activities are part of trip chains.) There are 17,500 chains. I use the chain numbers as

Re: [R] Why are Split and Tapply so slow with named vectors, why is a for loop faster than mapply

2004-04-08 Thread Peter Dalgaard
[EMAIL PROTECTED] writes: What I've found, however, is that it is not easy (or I have not found the easy way) to split a named vector into a list that retains the vector names. For example, splitting an unnamed vector (70,000+) based on the chain numbers takes very little time:

Re: [R] outliers

2004-04-08 Thread Jason Turner
[EMAIL PROTECTED] wrote: Dear all I would like to represent the outliers in the plot. These few outliers are much larger than the limit of 50 in the ylim-argument. plot(daten$month~daten$no,ylim=c(0,50)) I know that it is possible to introduce the information about the presence of outliers

Re: [R] Evaluating AIC

2004-04-08 Thread Jason Turner
Bret Collier wrote: R Users, I was just wondering if anyone has written a program (or if there is a package) out there that calculates the different derivations of AIC ... I did not see anything on the help pages (or in packages, but I could have missed it) ... [EMAIL PROTECTED]

Re: [R] Getting R to complete a web form

2004-04-08 Thread Jason Turner
Corey Moffet wrote: Dear R-Help, I am testing a web based erosion model and I would like to get R to submit the http requests. Now I make the requests manually and use R to extract the results by scan()ing a url() connection. It would be nice if I could fully automate the process. Any

[R] AIC

2004-04-08 Thread Erin Hodgess
Hi Bret! There is a step function and an AIC function in the base package. Also there is a logLik function in base as well. Finally, there is a stepAIC function in MASS Hope this helps! Sincerely, Erin Hodgess mailto: [EMAIL PROTECTED] __ [EMAIL

RE: [R] R/Splus code for PRESS?

2004-04-08 Thread Liaw, Andy
[I thought this has been covered before, but I can't find it in the archive...] PRESS = sum of squares of deletion residuals Any good book on regression will show you that deletion residual for multiple regression fitted by least squares is just the raw residual divided by one minus the hat

[R] question

2004-04-08 Thread Ja-Yong Koo
Hi, I have found a strange thing. If I copy and paste the R source file, then the result is okay with. However, if I use R GUI (File icon and Source File), then the result is different. Please let me know possible reasons. Many thanks in advance. Best Ja-Yong [[alternative

Re: [R] question

2004-04-08 Thread Tamas Papp
On Fri, Apr 09, 2004 at 01:33:18PM +0900, Ja-Yong Koo wrote: I have found a strange thing. If I copy and paste the R source file, then the result is okay with. However, if I use R GUI (File icon and Source File), then the result is different. Please let me know possible reasons. Next time