Hello
I am looking for a function which performs the same thing as rev but on a
matrix rather then a vector, based on one column.
I'd be happy to read the man page if such a function exists.
Thanks,
Vera Lindsay
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Does R have built in Gumbel distribution (pdf, ecdf, hazard, parameters estimation)
for the minimum case?
Thanks
Anne
[[alternative HTML version deleted]]
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https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE
On Thu, 14 Oct 2004 [EMAIL PROTECTED] wrote:
Hello
I am looking for a function which performs the same thing as rev but on a
matrix rather then a vector, based on one column.
I'd be happy to read the man page if such a function exists.
If I understand you, it is easy to do by indexing, but
please, take a look at package evd
Matthias
Does R have built in Gumbel distribution (pdf, ecdf, hazard, parameters
estimation) for the minimum case? Thanks
Anne
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Roger == Roger D Peng [EMAIL PROTECTED]
on Thu, 14 Oct 2004 17:06:25 -0400 writes:
Roger What lead you to believe that mle() is defunct? It's
Roger still in the `stats4' package in my installation of
Roger R.
yes indeed. Just to clarify possible confusions:
The 'mle'
Spencer == Spencer Graves [EMAIL PROTECTED]
on Thu, 14 Oct 2004 13:41:24 -0700 writes:
Spencer It looks like you have several non-printing
Spencer characters. nchar will give you the total number
Spencer of characters in each character string.
Spencer strsplit can break
Hi,
Unfortunately I have only some beginners hints to this very interesting
topic.
Writing R extensions provides examples how to execute r functions from
within C code.
There is also somewhere a doc how to use R as a shared library (?). But
I dont remember in which doc exactly.
Furthermore
Hi Bobby,
You are right - functions is a StringBuffer object.
I've compiled without the syntax error.
The error message is: Error in dev.print(
can only read screen device
Do you think this means that RTerm doesn't actually produce a
Screen plot when
Dear James,
sorry, this is not really an answer.
I use cutree to obtain clusters from an hclust object.
I do not get from the identify help page that identify should do anything
like what you expect it to do... I tried it out and to my surprise it
behaved as you said, i.e., it indeed does
ChrisH == Christian Hennig [EMAIL PROTECTED]
on Fri, 15 Oct 2004 11:43:53 +0200 (MEST) writes:
ChrisH Dear James,
ChrisH sorry, this is not really an answer.
nor this. I'm answering Christian...
ChrisH I use cutree to obtain clusters from an hclust
ChrisH object. I do
On Friday 15 Oct 2004 10:43 am, you wrote:
PS: It seems that each value is typed twice because classi is named, and
each value is also a name. Try as.vector(classi). (Perhaps a little useful
help in the end?)
Indeed. I have tried, for example:
as.vector(classi[[1]])
and
Vadim == Vadim Ogranovich [EMAIL PROTECTED]
on Thu, 14 Oct 2004 10:50:08 -0700 writes:
Vadim I thought that maybe authors of books on R should be
Vadim allowed (encouraged ?) to announce
Vadim availability/revisions of their books via the
Vadim R-packages list?
Well, most
Hi all,
Is it possible to have a test value for assessing the normality of
residuals from a linear regression model, instead of simply relying on
qqplots?
I've tried to use fitdistr to try and fit the residuals with a normal
distribution, but fitdsitr only returns the parameters of the
On Friday 15 Oct 2004 11:02 am, you wrote:
or unname(classi) -- which is slightly more expressive in this
case and possibly more desirable in other situations.
Martin Maechler, ETH Zurich
Thanks, Martin.
I've tried, like you suggested:
un_classi - unname(classi)
but
Dear Federico,
see:
? shapiro.test(stats) Shapiro-Wilk Normality Test
and
? jarque.bera.test(tseries)
Jarque-Bera Test
They are the most common tests used for normality
testing.
Ciao
Vito
Federico Gherardini wrote on Fri Oct 15 14:44:18 CEST
2004:
Hi all,
Is it
What about shapiro.test(resid(fit.object))
Stefano
On Fri, Oct 15, 2004 at 02:44:18PM +0200, Federico Gherardini wrote:
Hi all,
Is it possible to have a test value for assessing the normality of
residuals from a linear regression model, instead of simply relying on
qqplots?
I've tried
R-help
I have a martix with missing values( in which I want the sample size by
column)
When I :
apply(matrix,2,length)
I get the length of the vector regardless of missing values.
I can't pass an argument to length in apply.
Alternatively I could
ifelse ( is.na ( matrix [, columns in matrix
Hi Frederico,
take also a look at the package nortest:
help(package=nortest)
Best,
Dimitris
Dimitris Rizopoulos
Ph.D. Student
Biostatistical Centre
School of Public Health
Catholic University of Leuven
Address: Kapucijnenvoer 35, Leuven, Belgium
Tel: +32/16/396887
Fax: +32/16/337015
Web:
[EMAIL PROTECTED] wrote :
Are there any possibilities to fill a polygon with a point pattern or
with a symbol pattern like '+' oder '-' instead of shading lines?
In `spatstat' there is code for testing whether points belong to
a spatial region. The region can consist of any number of
Hi Luis,
just use:
apply( mat, 2, function(x) length(x[!is.na(x)]) )
I hope it helps.
Best,
Dimitris
Dimitris Rizopoulos
Ph.D. Student
Biostatistical Centre
School of Public Health
Catholic University of Leuven
Address: Kapucijnenvoer 35, Leuven, Belgium
Tel: +32/16/396887
Fax: +32/16/337015
Hi Luis,
Are you looking for the number of missings in each column? If so, try
this:-
bob-matrix(c(2:4, NA, 5:7, NA), ncol=2)
colSums(is.na(bob))
[1] 1 1
Hope this helps,
Ian.
mangosolutions
R Consulting and Training Services
Tel +44 118 902 6620
Fax +44 118 902 6401
-Original
Dimitris Rizopoulos [EMAIL PROTECTED] writes:
Hi Luis,
just use:
apply( mat, 2, function(x) length(x[!is.na(x)]) )
or:
apply(!is.na(mat),2,sum)
--
O__ Peter Dalgaard Blegdamsvej 3
c/ /'_ --- Dept. of Biostatistics 2200 Cph. N
(*) \(*) -- University of
or even:
colSums(!is.na(mat))
Best,
Dimitris
- Original Message -
From: Peter Dalgaard [EMAIL PROTECTED]
To: Dimitris Rizopoulos [EMAIL PROTECTED]
Cc: Luis Rideau Cruz [EMAIL PROTECTED]; [EMAIL PROTECTED]
Sent: Friday, October 15, 2004 1:43 PM
Subject: Re: [R] length with missing values
On 15 Oct 2004 at 12:01, Luis Rideau Cruz wrote:
R-help
I have a martix with missing values( in which I want the sample size
by column) When I :
apply(matrix,2,length)
Hi
Try
apply(matrix, 2, function(x) sum(!is.na(x)))
matrix is reserved word, so it is preferable to use other name
On Fri, 15 Oct 2004, Sundar Dorai-Raj wrote:
Luis Rideau Cruz wrote:
I have a martix with missing values( in which I want the sample size by
column)
When I :
apply(matrix,2,length)
I get the length of the vector regardless of missing values.
I can't pass an argument to length
At 10:51 2004-10-15 +0100, you wrote:
If you are using base grafics, you use the argument srt (see help(par)),
How do you get a, say, 45 degree rotation of the axis labels using `srt'?
The help page for par's `las' argument says
Note that other string/character rotation (via argument srt to par)
Dear Federico,
A problem with applying a standard test of normality to LS residuals is that
the residuals are correlated and heterskedastic even if the standard
assumptions of the model hold. In a large sample, this is unlikely to be
problematic (unless there's an unusual data configuration), but
On Fri, 2004-10-15 at 07:18, Henric Nilsson wrote:
At 10:51 2004-10-15 +0100, you wrote:
If you are using base grafics, you use the argument srt (see help(par)),
How do you get a, say, 45 degree rotation of the axis labels using `srt'?
The help page for par's `las' argument says
Note
James == James Foadi [EMAIL PROTECTED]
on Fri, 15 Oct 2004 11:36:14 +0100 writes:
James On Friday 15 Oct 2004 11:02 am, you wrote:
or unname(classi) -- which is slightly more expressive in this
case and possibly more desirable in other situations.
Martin
Use text(), for which srt will work. As an example:
plot(rnorm(20), rnorm(20), xaxt=n)
text(-2:2, rep(par(usr)[3], 5),
c(negative two, negative one, zero, one, two),
srt=45, xpd=NA, adj=1)
HTH,
Andy
From: Henric Nilsson
At 10:51 2004-10-15 +0100, you wrote:
If you are using
Have you checked Section 5.14 (page 64) of R-extension titled Using
these functions in your own C code.
Section 5.7 tells you about some of the available subroutines.
On Fri, 2004-10-15 at 01:31, doktora v wrote:
Hey everyone,
I have been looking for a while for ways to integrate R's
Dear R-Help
i have a newbie question, how edit size fonts and colors in the plots (scatter.acm or
dudi.acm function) of multiple correspondence analysis in the ADE4 Package?
thanks?
Rafael Gutierrez
Estadístico
Unidad de Tecnología Cerro Matoso S.A.
Tel. 4-7723350 Fax. 4-7723236
Hi,
I would like to use constrained splines in a GLM model (Poisson link)
to take into account the nonlinear effect of some covariate. The
constraints I need are described below.
I have several variables that I need concurrently in the same model.
I looked at package mgcv but I do not know if/how
Thank you very much for your suggestions! The residuals come from a gls
model, because I had to correct for heteroscedasticity using a weighted
regression... can I simply apply one of these tests (like shapiro.test)
to the standardized residuals from my gls model?
Cheers,
Federico
Dear R Wizards: Running R 1.9.1. on amd64.
Promise- c(0,20,40); Expect- c(0, 20, 0.2*20+.8*40 );
# this omits printing numbers on the axes labels.
pdf(file = bug.pdf );
plot(Promise, Expect, type=b, ylim=c(0,60));
dev.off();
# this works
postscript(file = bug.eps );
plot(Promise, Expect, type=b,
John Fox wrote:
Dear Federico,
A problem with applying a standard test of normality to LS residuals is that
the residuals are correlated and heterskedastic even if the standard
assumptions of the model hold. In a large sample, this is unlikely to be
problematic (unless there's an unusual data
John Fox wrote:
Dear Federico,
A problem with applying a standard test of normality to LS residuals is that
the residuals are correlated and heterskedastic even if the standard
assumptions of the model hold. In a large sample, this is unlikely to be
problematic (unless there's an unusual data
Hi!
I'm with a little problem when saving a graphic into pdf. The graphic has
the label: Milhões de toneladas. The problem is with the accent. After I
save the graphic into pdf the õ doesn't appear.
Somebody could help me?
Thanks,
Talita Perciano Costa Leite
Graduanda em Ciência da Computação
Hi
Try to change the parameters in the s.class function corresponding to col (which is 1
by default) and using the parameter font as a small positive integer determining a
text font for characters and hence an interline spacing.
Leonardo Trujillo
Southamtpton Statistical Sciences Research
Hi, list,
The 'tree' package has edit.tree to change split variables by user.
Does 'rpart' package have something similar? I couldn't find either in the
manual or archive. Thanks in advance.
Best,
Auston
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Dear R Wizards: Running R 1.9.1. on amd64.
Promise- c(0,20,40); Expect- c(0, 20, 0.2*20+.8*40 );
# this omits printing numbers on the axes labels.
pdf(file = bug.pdf );
plot(Promise, Expect, type=b, ylim=c(0,60));
dev.off();
# this works
postscript(file = bug.eps );
plot(Promise,
On Fri, 2004-10-15 at 09:13, [EMAIL PROTECTED] wrote:
Dear R Wizards: Running R 1.9.1. on amd64.
Promise- c(0,20,40); Expect- c(0, 20, 0.2*20+.8*40 );
# this omits printing numbers on the axes labels.
pdf(file = bug.pdf );
plot(Promise, Expect, type=b, ylim=c(0,60));
dev.off();
#
Note that there are also regexp classes that define certain character
sets, most notably [:graph:] , which can make it easy to create
appropriate regexps. More is in ?regex .
Martin Maechler maechler at stat.math.ethz.ch writes:
:
: Spencer == Spencer Graves spencer.graves at pdf.com
:
Is there a problem with using TukeyHSD for individual comparisons of
means coming from a within-subjects ANOVA?
I always get: no applicable method for TukeyHSD
Thank you, Steffen
__
[EMAIL PROTECTED] mailing list
No problems under R 2.0.0 or 1.9.1 on that platform.
Are you *sure* this is a bug in the PDF and not in your pdf reader?
Please read the PDF source file to find out. Mine has lines like
/F2 1 Tf 12.00 0.00 -0.00 12.00 68.40 47.52 Tm (0) Tj
/F2 1 Tf 12.00 0.00 -0.00 12.00 144.39 47.52 Tm (10) Tj
/iaw,
* [EMAIL PROTECTED] [2004-Oct-15 06:13 AKDT]:
Dear R Wizards: Running R 1.9.1. on amd64.
Promise- c(0,20,40); Expect- c(0, 20, 0.2*20+.8*40 );
# this omits printing numbers on the axes labels.
pdf(file = bug.pdf );
plot(Promise, Expect, type=b, ylim=c(0,60));
dev.off();
Version
I did experience the same problem.
After installing R 2.0.0 patched and downloading the source for
Rcmdr_0.99-12 from John Fox's Web page
http://socserv.socsci.mcmaster.ca/jfox/Misc/Rcmdr/
and recompiling the package
it now works.
Ctrl-C, Ctrl-X, and Ctrl-V, in the text boxes of Rcmdr now work.
Berton Gunter wrote:
Quite right, John!
I have 2 additional questions:
1) Why test for normality of residuals? Suppose you reject -- then what?
(residual plots may give information on skewness, multi-modality, data
anomalies that can affect the data analysis).
Because I want to know if my model
Hi: Thank you everyone. You were all correct. This turns out to be a
viewer bug---and even more likely a viewer installation bug, not an
xpdf bug, much less an R bug. Apologies for having wasted everyone's
time.
Regards, /ivo
---
ivo welch
__
Scott,
Has anyone suggested yet that some options might need adjusting in the
Windows program that wrote the file? In my experience, CSV files from
Windows applications are typically pure ASCII (though yours clearly isn't).
Another possibility is that the program can export in plain ASCII with
Hi,
I have tried to download the bootstrap.tar.gz from the website below:
http://cran.r-project.org/src/contrib/Old/0.50/INDEX.html
I have extracted the folder to a zip file...and then use the load packages from local
zip files.
I use R2.0.0.0 and windows NT, i get the error:
1: error -1 in
Hi again,
You could change the size font using the parameter clabel in both functions s.label
and s.class.
For the typical example in Fine, 1996 you could notice that slabel(acm$co,clabel=1)
produce different results than
Berton Gunter wrote:
Exactly! My point is that normality tests are useless for this purpose for
reasons that are beyond what I can take up here.
Thanks for your suggestions, I undesrtand that! Could you possibly give
me some (not too complicated!)
links so that I can investigate this matter
Hi,
just in the process of updating my packages for R v2.0.0 and I have not had
time to followed the R v2.0.0 discussions so maybe my questions have already
been answered.
A concern I have is that when creating packages they should be backward
compatible with R v1.9.x for a while until all users
Berton Gunter wrote:
Exactly! My point is that normality tests are useless for
this purpose for
reasons that are beyond what I can take up here.
Thanks for your suggestions, I undesrtand that! Could you
possibly give
me some (not too complicated!)
links so that I can investigate
Brilliant. With R 2.0.0 patched and Rcmdr 0.9-12 all problems are gone.
Thank you all, and a special thank you for the R Commander; it saves a lot
of effort for teaching purposes.
Best regards,
Adrian
-Original Message-
From: Erich Neuwirth [mailto:[EMAIL PROTECTED]
Sent: 15 octombrie
Hi,
I had some Java code that worked with SJava 0.65 under R 1.8.*. I'm
trying to get it to work with R 2.0.0. My JVM is Sun 1.5.0 (running on
Fedora Core 2)
I downloaded and installed SJava 0.65 in my personal directory using
R CMD INSTALL SJava-0.65.tar.gz -l ~/src/Rlibrary
and before
You downloaded a .tar.gz file and treated it as a zip file, for some
reason not in any R documentation.
On Fri, 15 Oct 2004, Nebahat Noyan wrote:
Hi,
I have tried to download the bootstrap.tar.gz from the website below:
http://cran.r-project.org/src/contrib/Old/0.50/INDEX.html
I have
Nebahat Noyan wrote:
Hi,
I have tried to download the bootstrap.tar.gz from the website below:
http://cran.r-project.org/src/contrib/Old/0.50/INDEX.html
0. For sure you are joking ...
The package is 7.5 years old (16-Apr-1997) - too old to be
installable by recent versions
Henrik Bengtsson wrote:
Hi,
just in the process of updating my packages for R v2.0.0 and I have not had
time to followed the R v2.0.0 discussions so maybe my questions have already
been answered.
A concern I have is that when creating packages they should be backward
compatible with R v1.9.x for a
Dear Adrian,
Since I moved the discussion of this problem to the r-devel list, I should
have reported back to r-help (1) that the problem was general to tlctk (not
just the Rcmdr package), and (2) that Duncan Murdoch made a change to the
patched Windows version of R 2.0.0 that made the problem go
A binary RPM for Mandrake 10.0 official has been uploaded and will
soon be available on CRAN, as well as the SRPM with which users of
other flavours of Mandrake will be able to build (and hopefully
contribute) their own RPM's.
Please read the readme file if you have problems installing.
Let's see if I can get my stat 101 straight:
We learned that linear regression has a set of assumptions:
1. Linearity of the relationship between X and y.
2. Independence of errors.
3. Homoscedasticity (equal error variance).
4. Normality of errors.
Now, we should ask: Why are they needed?
Dear Kjetil,
I don't believe that these are BLUS residuals, but since the last n - r
effects are projections onto an orthogonal basis for the residual
subspace, they should do just fine (as long as the basis vectors have the
same length, which I think is the case, but perhaps someone can
Dear Federico,
The problem is the same with GLS residuals -- even if the GLS transformation
produces homoskedastic errors, the residuals will be correlated and
heteroskedastic (with this problem tending to disappear in most instances as
n grows). The central point is that residuals don't behave
Dear Andy,
At the risk of muddying the waters (and certainly without wanting to
advocate the use of normality tests for residuals), I believe that your
point #4 is subject to misinterpretation: That is, while it is true that t-
and F-tests for regression coefficients in large sample retain their
Wrap-up:
Different solutions were proposed for turning a matrix
into a bitmap.
Henrik Bengtsson [EMAIL PROTECTED]
R.classes bundle from
(http://www.maths.lth.se/help/R/R.classes/)
MonochromeImage
R.classes is still not compatible with
2.0.0 (minor modification to DESCRIPTION etc
are needed) so
Hi John,
Your point is well taken. I was only thinking about the shape of the
distribution, and neglected the cases of, say, symmetric long tailed
distributions. However, I think I'd still argue that other tools are
probably more useful than normality tests (e.g., robust methods, as you
OK, I'll expose myself:
I tend to do normal probability plots of residuals (usely deletion
/ studentized residuals as described by Venables and Ripley in Modern
Applied Statistics with S, 4th ed, MASS4). If the plots look strange, I
do something. I'll check apparent outliers for
Hello,
I wonder when I do coxph in R:
coxph( Surv(start, stop, event) ~ x, data=test)
If x is a categorical varible (1,2,3,4,5), should I creat four dummy
varibles for it? if yes, how can I get the overall p value on x other
than for each dummy variable?
Thanks
Lisa Wang
Princess Margaret
Hello,
I apologize for the post if this is not the appropriate place. I have
searched the R List archives and the Vanderbilt.edu website, but am not
able to understand how to use the accrualReport.s and associated scripts
available at the Vanderbilt site. It must be very simple, but I am at a
Aric Gregson wrote:
Hello,
I apologize for the post if this is not the appropriate place. I have
searched the R List archives and the Vanderbilt.edu website, but am not
able to understand how to use the accrualReport.s and associated scripts
available at the Vanderbilt site. It must be very
On Fri, 15 Oct 2004, Lisa Wang wrote:
Hello,
I wonder when I do coxph in R:
coxph( Surv(start, stop, event) ~ x, data=test)
If x is a categorical varible (1,2,3,4,5), should I creat four dummy
varibles for it? if yes, how can I get the overall p value on x other
than for each dummy variable?
No.
Kalaylioglu, Zeynep (IMS) wrote:
Hi
There is something weird going on with the tree package version
1.0-16.
So I want to download an updated tree package. I found that R website
has version 1.0-18. I want to try this one and see how the tree
algorithm is performing.
What is the best way to
On 15-Oct-04 bogdan romocea wrote:
Dear R users,
I have a few hundred .csv files which I need to put
together (full outer joins on a common variable) to do a
factor analysis. Each file may contain anywhere from a few
hundred to a few thousand rows. What would be the most
efficient way to
Dear R users
I have a really simple question (hoping for a really simple answer :-):
Having estimated the spectral density of a time series x (heart rate
data) with:
x.pgram - spectrum(x,method=pgram)
I would like to compute the power in a specific energy band.
Assuming that frequency(x)=4
Liaw, Andy wrote:
.
.
.
.
Also, I was told by someone very smart that fitting OLS to data with
heteroscedastic errors can make the residuals look `more normal' than they
really are... Don't know how true that is, though.
Certainly true, since the residuals will be a kind of average, so the
Hi folks:
I'm trying to compile R-2.0.0 on my Alpha (164SX;
alphapca56-unknown-linux-gnu) running RedHat Linux 7.2 with gcc3.4.1.
Here is where the compile terminates:
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
mkdir -p -- ../../../library/tcltk/demo
mkdir -p --
Hello, Rusers:
What is the maximum number of data R can handle? Or I have to use SAS? I am
trying to do some microarray data analysis. But I am totally new. Did anyone
use R to do microarray analysis?
Many thanks,
Sun
__
[EMAIL PROTECTED] mailing
Dear all,
I am doing 200 times simulation. For each time, I generate a matrix and
define some function on this matrix to get a 6 dimension vector as my
results.
As the loop should be slow, I generate 200 matrice first, and save them into
a list named ma,
then I define zz-sapply(ma, myfunction)
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