[4:6,,drop=FALSE]
Uwe Ligges
cheers,
crispin
This email is confidential and intended solely for the use o...{{dropped}}
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call R by something like
R CMD BATCH /usr/local/bin/R_installAll.R /path/to/R_installAll.Result
Uwe Ligges
Here's the shell script I will schedule with cron
R_installAll.sh --
#!/bin/bash
R CMD BATCH /usr/local/bin/R_installAll.R
Any help that can be provided is appreciated.
One obvious point:
Continuation lines should begin with a white space (such as a tab). See
the Writing R Extensions manual for more details.
Uwe Ligges
Thank you,
John Zajd
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(but probably not the result you want to get) ...
Uwe Ligges
thank you in advance.
Chris
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what they say about for
loops... Thanks, Roger
For example merge() by row numbers and calculate the differences in the
next step.
Uwe Ligges
out.r[1:5, 1:3]
1 2 3
1100 -0.0992 -0.0802 -0.0653
1200 -0.1242 -0.0417 0.0082
1300 -0.1681 -0.0211 -0.0958
1400 -0.0985 -0.1217 0.0026
1500
[EMAIL PROTECTED] wrote:
Hello,
I'm interested in LaTeX notations in R graphics.
For example, i would like to know how to obtain this picture
http://www.r-project.org/screenshots/power.png.
See ?plotmath
Uwe Ligges
Thanks
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such table without writing my
own complicated function?
Yes, I think you have to write your own function, but no need for a
complicated one. ;-)
Uwe Ligges
Thank you in advance,
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Roger D. Peng wrote:
What version of R are you using? 'modreg' no longer exists---its
functions have been moved to the 'stats' package.
Let me add that the URL cited below is not an official one. Plaese
take a look at some CRAN mirror close to you.
Uwe Ligges
-roger
Amir Safari wrote
to the poster who might not be subscribed on the list.
Thanks,
Uwe Ligges
Sincerly !
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., in a data.frame):
1 1 2 3
2 1 2 3 4
3 1 5 6 7 8
is there any way to do so?
Yes, with e.g. sep=\t and sep= the number of separators is taken
into account.
No, with sep= the separator is *any* white space.
Uwe Ligges
package is it in?
In principle, you are looking for sample().
If you don't need other values for the restrict argument than the
default, you can simply define:
randomize - function(x)
sample(seq(nrow(x)))
Uwe Ligges
Thanks!
Luis
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in this case.
You need the regular adj here, which cannot do the trick for axis(),
but you can workaround with mtext():
plot(1:50, yaxt=n)
axis(2, at=1:50, labels=FALSE)
mtext(paste('a',1:50,sep=''), 2, at=1:50, las=2,
cex=0.5, adj=0, line=1.5)
Uwe Ligges
plot(1:50,axes = FALSE,ylab
[EMAIL PROTECTED] wrote:
Hello,
I would like make a plot with a legend. How can I take the legend
outside of the plot frame?
Use par(xpd = .)
See ?par for details.
Uwe Ligges
Greetings, Sven Knüppel (Berlin, Germany
This is perfect, \ is *printed* escaped, hence for file access you can
perfectly use this character vector.
Uwe Ligges
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PLEASE do read the posting guide! http
Don't know about the details with RODBC here, why not just use forward
slashes as in (used it in all of my courses and never tried \\
before):
rankFile - paste(R:/New Ranks/SMC/SMC/, rankDate, .xls, sep=)
Uwe Ligges
roger bos wrote:
I was surprise myself that I was having
the
problem is because the packages Rggobi, RGtk and tcltk are running together. I
thought about a solution that would be unload the Rggobi and RGtk packages
after
I use them. Do you know how I do that? And if someone has another solution for
that problem please help me.
See ?detach
Uwe Ligges
the path (in control panel) of C:\texmf\miktex\bin
4. Added the path (in control panel) referencing R (this version being
R2.0patched) which
is C:\Program Files\R\rw2000pat\bin
Above you told us about R-2.1.1 .!
Please, really use a recent version.
Uwe Ligges
5. Since my codes are all
?
Don't know. I'd rather ask someone. ;-)
I mean the same someone you got the code from, because getareahr() might
be his/her private invention.
Uwe Ligges
thanks!
Agnès
---
Agnès
!
Sander.
Many ways, a very basic one is to make it a function with an argument
corresponding to names of columns of the data.frame (code given below).
Uwe Ligges
do_it - function(varname){
library(lattice)
tmp - aggregate(test[[varname]], list(test$bins, test$groups), mean
it is really in the path of the shell from which you are
executing R CMD?
I think this is not the case. Try typing sh.exe therein directly ...
Uwe Ligges
I saw in an old FAQ a suggestion to move sh.eve to the C:\bin\ folder,
but my C: root does not have a bin folder. Nonetheless, I created
one
Laurent Valdes wrote:
I have seen, several times, dots (like this: y ~. ) in formula
descriptions, noticeably in R help.
I am unable to see what it does correspond to.
Any ideas ?
All other variables (except y) from the given data.frame...
Uwe Ligges
the extra + come from?
Which *extra* +?
This expression is the same as
+(spp1 + spp2 + spp3, spp5)
hence + with arguments spp1 + spp2 + spp3 and spp5
Same below.
Uwe Ligges
as.character(fmla)
[1] ~ y1
[3] spp1 + spp2 + spp3 + spp5
Thanks
?
Feature:
The arguments of paste() get pasted, and you have just specified one
argument which is a character *vector*.
You want to say that the elements of the vector should be pasted as follows:
line - paste(c(echo A B, eargs), collapse = )
Uwe Ligges
help appreciated.
/iaw
---
ivo
the fisher.test.
fm-function(x)
{dfrow-nrow(x)
mm - vector(list, dfrow)
for(i in 1:dfrow)
mm[[i]] - matrix(x[i,],nr=2)
If x is a data.frame, x[1,] is also a data.frame.
Try unlist() at first:
mm[[i]] - matrix(unlist(x[i,]),nr=2)
Uwe Ligges
}
I don't know how to access each mm
to be seriously broken.
Please reinstall R (and that's the best time to upgrade to R-2.1.1).
Uwe Ligges
Though i am using the version R 2.0.0. A couple of hours back it was
loaded, in the new session this problem is generated.
regards
Krishna
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Simon Woodhead wrote:
Dear all,
Could someone please explain the following perculiarity?
Please read the FAQ Why doesn't R think these numbers are equal (as
the posting gude asks you to do).
Uwe Ligges
2 == 0.2/0.1
[1] TRUE
3 == 0.3/0.1
[1] FALSE
Similarly,
floor(0.2/0.1
/platform and compiler are we talking about?
Uwe Ligges
Thanks in advance.
Xiao Jianfeng
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of the columns are the outputs
from the different interations.
how would have to define the output matrix initally?
Of course, you define it to the maximal_length x number_iterations, but
in fact you probably want a list rather than a matrix.
Uwe Ligges
/
thanking you in advance
the name of this function. we could use cbind but it does
not seem to allows this!
See my other message: You probably want a list.
If not, the sparce matrix classes provided by package Matrix might be
worth considering.
Uwe Ligges
thanking you in advance.
/
allan
directory).
Uwe Ligges
sosman wrote:
I created a tex file following the example in the Sweave help which
produced the following files in my working directory.
Sweave-test-1-006.eps
Sweave-test-1-006.pdf
Sweave-test-1-007.eps
Sweave-test-1-007.pdf
Sweave-test-1.tex
When I run latex
which models/methods you
applied).
Uwe Ligges
Can anybody help me to find out a light in my way?
I've been searching all over the web to fetch any help
or example but I couldn't get anything.
I would apreciate any help greatly.
Thanks
Carlos Niharra López
Software Engineer
confidence interval for
Cost-Effectiveness Ratio.
I have pasted the message in blue.
No, we do not want html mail (and the html version got deleted, see
below), hence nothing is blue (although we statisticians do like sort of
BLUEs, of course).
Uwe Ligges
I appreciate any guidance
it.
Could somebody give me a hint?
For example, read the most recent R Newsletter on localization of R.
As one solution, set the environment variable
LANGUAGE=en
Uwe Ligges
Kind regards,
Dominik
My system:
platform i386-pc-mingw32
arch i386
os mingw32
')
the wmf command but there is nothing to find with help.search(wmf)
See ?win.metafile
Uwe Ligges
with regards
Knut Krueger
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Martin C. Martin wrote:
Hi,
I have a 5x731 array A, and I want to compute the sums of the columns.
Currently I do:
apply(A, 2, sum)
colSums(A)
Uwe Ligges
But it turns out, this is slow: 70% of my CPU time is spent here, even
though there are many complicated steps in my
, nrow(A)) %*% A)
# ~ 0.5 sec.
Uwe Ligges
Duncan Murdoch
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Duncan Murdoch wrote:
On 8/5/2005 12:43 PM, Uwe Ligges wrote:
Duncan Murdoch wrote:
On 8/5/2005 12:16 PM, Martin C. Martin wrote:
Hi,
I have a 5x731 array A, and I want to compute the sums of the
columns. Currently I do:
apply(A, 2, sum)
But it turns out, this is slow: 70% of my
Robert Citek wrote:
Has any developed or is anyone developing a plug-in[1] for using R
with Eclipse[2]?
Stephan Wahlbrink made a Plug-In available at
http://www.walware.de/goto/statet
Uwe Ligges
Eclipse is an Integrated Development Environment (IDE) written in
Java. While originally
Levels: 0 1
But I'm puzzled at the following. If I say:
predict(m.rpart, newdata=D[N1+t,], type=vector)
173
1
What gives?
This means that the class of the first level is chosen, and the first
level is 0.
Uwe Ligges
I will be happy to packup a runnable demonstration for any
?
Uwe Ligges
Thank you for your response.
Abdou.
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PLEASE do read the posting guide! http://www.R-project.org
as in:
x - -6:16
op - par(mfrow = c(2, 1))
contour(outer(x, x), method = edge, lty=1)
contour(outer(x, x), method = edge, lty=2)
Uwe Ligges
Thank.
Uwe Ligges
Thank you for your response.
Abdou. [[alternative HTML version deleted
file in the
base package of R that needs modification.
Error in parse(file, n, text, prompt) : syntax error on line 11102
No, you have introduced an error, obviously.
Uwe Ligges
Error: unable to load R code in package 'stats'
During startup - Warning message:
package stats
appearaing when you say
library(RWinEdt)
I guess you have a french localized version of RGui running in mdi mode?
In this case, switch to sdi mode and adjust the RWinEdt setting.
It's all explained in much more detail in the ReadMe of RWinEdt.
Uwe Ligges
I am working with :
version
Shengzhe Wu wrote:
Hello,
When I open a new device by windows(), how to hide the 3 buttons on
the top-right corner of this window, since I want to make these
buttons not work, and the window can be closed only by dev.off() or
graphics.off().
You cannot.
Uwe Ligges
Thank you
/libs?
Either install them (highly recommended) or configure without readline
support.
Uwe Ligges
Thanks,
Bill
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PLEASE do read the posting guide! http://www.R
what R chooses for you.
Uwe Ligges
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PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
on why the make command is not found?
This is not related to R but to the setup of your OS.
Is make installed?
Is the path known in the corresponing environment variable?
Uwe Ligges
Thanks a lot
Petra
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)
Uwe Ligges
This works fine as long as there is only 1 digit after the decimal. If I
have '982323.10', then the result of the code is '982323.141' instead of
'982323.41'
How do I fix the code to replace all characters after the decimal by 41?
Thank you
-D
)))
identifyMat - function(x, ...){
label - paste(row(x), , , col(x), sep=)
identify(row(x), x, labels=label, ...)
}
identifyMat(sines)
Uwe Ligges
Thanks.
Hari
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loaded?
Uwe Ligges
install.packages('Matrix')
trying URL
'http://www.ibiblio.org/pub/languages/R/CRAN/bin/windows/contrib/2.1/Mat
rix_0.98-1.zip'
Content type 'application/zip' length 891288 bytes
opened URL
downloaded 870Kb
package 'Matrix' successfully unpacked and MD5 sums checked
to 50, hopefully.
Since both points above seem to be very strange on your machine: Which
version of R are you using? We assume the most recent one which is R-2.1.1.
Uwe Ligges
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calculate 50/1000 and Excel does better?
is my approach correct??
No.
Uwe Ligges
thanks n regards
-dev
Quoting Uwe Ligges [EMAIL PROTECTED]:
Answering both messges here:
1. [EMAIL PROTECTED] wrote:
Hi I appreciate your response. This is what I observed..taking
the log transform
a Binomial
distribution with n=100 (hence impossible!).
And that's what the WinBUGS (NOT R!) error message tells you.
Uwe Ligges
qi zhang wrote:
*Dear R-user,
*
I try to run Winbugs from R using bugs function in R2WinBUGS.My model works
well in Winbugs except that I can't get DIC
without R stopping (which I want because each loop takes some time so
I do not want it to stop), but I also want to capture the variable when an
error occur.
Right idea:
fit - try(nls(model, .))
if(inherits(fit, try-error))
write(i, file=hello.txt)
Uwe Ligges
, var.equal = FALSE)$p.value
})
sum(erg 0.05) # 45
which seems plausible to me.
Uwe Ligges
--
sink(a1.txt);
for (i in 1:1000)
{
x-rgamma(10, 2.5, scale = 10)
y-rgamma(10, 2.5, scale = 10)
z-wilcox.test(x, y, var.equal = FALSE)
print(z)
x1-log(x)
y1-log(y)
k-wilcox.test(x1, y1
trouble with trellis.par.set()
trellis.par.set(par.xlab.text.cex = list(cex=1.5))
You mean:
trellis.par.set(par.xlab.text = list(cex=1.5))
Uwe Ligges
is not quite right, and having read the documentation, I wonder if anyone
help me get the graphical parameter right?
print(trellis.par.get
), for example.
Uwe Ligges
Thanks
Sabine
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PLEASE do read
Dirk Eddelbuettel wrote:
On 24 July 2005 at 19:38, Prof Brian Ripley wrote:
| It is already optional, and documented as such as Uwe points out:
Yup, that one I evidently didn't know ... maybe the help on --docs needs to
be more explicit. Dunno. Or the section in the 'R Extensions' manual
.
Uwe Ligges
before 2.2.0; I've got a number of higher priority things to get through
first. But if someone wants to volunteer to write it up in texinfo
format, I'll be appreciative.
Duncan
Several such recipes have been
posted to the internet or R-help. The one that I have found
4.2
if I want to assign y3's value to matrix, where the value's row and
column should correspond the y1's and y2's value, such like
matrix[y1[1]][y2[1]] - y3[1]
For a matrix X:
X[cbind(y1, y2)] - y3
Uwe Ligges
how can this be realized?
thanks
Hao Wu
path?
Do you have modified MkRules accordingly?
Uwe Ligges
cp: cannot stat 'c:/temp/RPackageExample-19Jul05/test/chm/test.chm': No such
file or directory
I do not know if this error is due to the TeX version, or if I am doing any
other error. Does anybody have some idea?
Thank
Dirk Eddelbuettel wrote:
On 24 July 2005 at 13:44, Gabor Grothendieck wrote:
| hhc.exe is the Microsoft help compiler. You have to download that
| and then put hhc.exe somewhere in your path. The Windows
| console command
|
| path
|
| will give you the pathnames in your current path,
Wensui Liu wrote:
you might need quit(yes) when you exit R.
I think nobody want to save the whole workspace if just one object is of
interest, hence you save(), as already mentioned in a former post.
Uwe Ligges
On 7/22/05, Baoqiang Cao [EMAIL PROTECTED] wrote:
Hello Uwe Ligges,
I
, beta1 and eta.
Then we might be able to explain where you have your problems.
Uwe Ligges
Thks
guillaume
// Webmail Oreka : http://www.oreka.com
How do I extract the elements aaa, bbb, ccc from B?
For example:
sapply(B, [, 2)
Uwe Ligges
Thanks in advance.
Dennis Fisher MD
P (The P Less Than Company)
Phone: 1-866-PLessThan (1-866-753-7784)
Fax: 1-415-564-2220
www.PLessThan.com
[[alternative HTML version deleted
than nnet package? Any example will be highly
appreciated!
Best,
Baoqiang Cao
See ?nnet which point you to its predict method.
You say
nnetObject - nnet(.)
Now store the nnetObject and use it later as in:
predict(nnetObject, newdata)
Uwe Ligges
on such an argument, but you cannot call that function without
specifying that argument - it simply cannot be evaluated.
I guess you are looking for software that does symbolic algebra. R
cannot (well, almost), R is mainly intended for numerical computations.
Uwe Ligges
[EMAIL PROTECTED] wrote:
Thks
Baoqiang Cao wrote:
Hello Uwe Ligges,
I might misdiscribe my question. What I thought is that, after
nnetObject-nnet(...), this nnetObject will be gone after I exit R. Since I
need the trained nnetObject for next time without training it again, how can
I save this nnetObject (to some
Ivy_Li wrote:
Dear All,
With the warm support of every R expert, I have built my R library
successfully.
Especially thanks: Duncan Murdoch
Gabor Grothendieck
Henrik Bengtsson
Uwe Ligges
You are welcome.
The following
are generated and
you get a larger number of variables in the later process.
Uwe Ligges
thanks for your help + kind regards,
Arne
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Duncan Murdoch wrote:
On 7/21/2005 10:29 AM, Uwe Ligges wrote:
Gabor Grothendieck wrote:
I think you have been using R too long. Something like
this is very much needed. There are two problems:
1. the process itself is too complex (need to get rid of perl,
integrate package
? This is completely unclear to me.
Uwe Ligges
Any idee on this?
thks
guillaume.
// Webmail Oreka : http://www.oreka.com
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Clark Allan wrote:
hi all
a very simple question.
i have plot(x,y)
but i would like to add in on the plot the observation number associated
with each point.
how can this be done?
See ?text
Uwe Ligges
/
allan
introduced in
R-1.9.0, AFAIR. There is a corresponding article in R News.
Just download the source package in order to look at the code.
Uwe Ligges
Thank you!
Emili
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spread over the web satisfies this requirement, AFAICS), she/he is
invited to contribute, of course.
BTW, everybody else is invited to submit proposals for R Help Desk!!!
Uwe Ligges
On 7/21/05, Uwe Ligges [EMAIL PROTECTED] wrote:
Ivy_Li wrote:
Dear All,
With the warm support of every R
Seth Pruitt wrote:
To All,
I am using the BRugs package. In running the meta file BRugsFit() with a
syntactically correct model .txt file, I see the message:
Error in FUN(X[[1]], ...) : .C(..): 'type' must be real for this format
Hi,
can you send me in a private message a reproducible
Prof Brian Ripley wrote:
On Wed, 20 Jul 2005, Kevin E. Thorpe wrote:
Thank you for the information. I have contacted the RPM maintainer and am
awaiting a response.
It occurs to me that my problem could also be fixed by putting ATLAS on my
system. Are there advantages to doing that or any
the following:
1.legend(-5,.3,expression(hat(phi)*=*PHI))
2.legend(-5,.3,paste(expression(phi),=,PHI))
See ?plotmath or the Help Desk Article Automation of Mathematical
Annotation in Plots in R News 2 (3), 32-34.
legend(-5, .3, substitute(hat(phi) == PHI, list(PHI = PHI)))
Uwe
.
The package maintainer may know better.
Uwe Ligges
BTW: Why do you ask twice (in private message and on R-help)? I am
reading R-help anyway ...
Thanks,
Tolga
Please follow the attached hyperlink to an important disclaimer
http://www.csfb.com/legal_terms/disclaimer_europe.shtml
idea?
What about setting LANGUAGE in .Renviron?
See ?.Renviron
Uwe Ligges
Pingping Zheng
Department of Mathematics and Statistics
Fylde College
Lancaster University
Lancaster LA1 4YF
UK
Baoqiang Cao wrote:
Original message
Date: Thu, 14 Jul 2005 19:50:41 +0200
there for getting started?
Can you specify a reproducible examples, please?
Uwe Ligges
TIA,
Pete
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Dongseok Choi wrote:
Thank you very much for your help!!
Now, it runs without any problem.
Is it going to be fixed in the next release?
Of course, Brian
Thanks again,
Dongseok
Dongseok Choi, Ph.D.
Assistant Professor
Division of Biostatistics
Department of Public Health
Uwe Ligges wrote:
Dongseok Choi wrote:
Thank you very much for your help!!
Now, it runs without any problem.
Is it going to be fixed in the next release?
Of course, Brian
[hmmm, looks like some wrong shortcut has been used - and it must have
been me who forgot to drink coffee before
setup? Thank you so much!
E.g. by setting the envrionment variable
LANGUAGE=en
Uwe Ligges
Best,
Nan
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Baoqiang Cao wrote:
Original message
Date: Thu, 14 Jul 2005 19:50:41 +0200
From: Uwe Ligges [EMAIL PROTECTED]
Subject: Re: [R] East Asian language
To: Nan Lin [EMAIL PROTECTED]
Cc: r-help@stat.math.ethz.ch
Nan Lin wrote:
Dear all,
I just installed R 2.1.1. The installation
) of parameters.
I want to run this from R using system a la:
system(foo.exe, input = params.txt)
but that doesn't do it. What am I missing?
You misinterpreted input:
system(foo.exe params.txt)
should be sufficient. See also ?shell.
Uwe Ligges
platform i386-pc-mingw32
arch i386
not understand why change the labels, and not know that is
ralationship. Samebody can hel me in this analysis.
Not so for me.
As the posting guide asks you to do: Can you specify a reproducible
example, please.
Uwe Ligges
Thank for all
fdo
Fernando Espindola R.
Division
of the data.
Uwe Ligges
Ruben
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not to find maps on
CRAN in your case.
Uwe Ligges
Thanks for any guidance,
Mark
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is good?
That one from GCC is perfect, but in a much more recent version ...
Uwe Ligges
-Luke
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in the same way as the plots.
If you really want high quality, why do you choose a bitmaped device
rather than non-bitmapped devices such as ps, pdf or wmf?
Uwe Ligges
with regards
Knut Krueger
http://www.biostatistic.de
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-2.1.1 where the bug has been fixed.
Uwe Ligges
Thanks, Stefan
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,
or even better use short term formulas such as y~., if all variables
should be used anyway.
Uwe Ligges
could anybody give me a hint?
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Robin Hankin wrote:
What about
foo - function(a){
n - length(a)
X - diag(n+1)
X[lower.tri(X)] - unlist(lapply(seq(n),
function(x) cumprod(c(1, a)[-seq(x)])))
X
}
foo(c(10,7,2))
Uwe Ligges
Hi
I want to write a little function that takes a vector
misc3d is a very new package.
CRAN's windows binary repository for R-2.0.x is no longer updated, hence
does not contain the package. The corresponding ReadMe tells us: Last
update: 19.04.2005.
Either upgrade to R-2.1.1 and try again, or compile the package from
sources yourself.
Uwe Ligges
the maintainers of the package and the cited URL
(CCing both) to update at least one of them (package or
http://www.herine.net/locfit/start.html)
While the web page states the last update is (December 16, 2004
version), the version on CRAN is locfit_1.1-9.tar.gz dated 14-Sep-2004.
Uwe Ligges
fit
are the subject of interest.
And you might want to give a simple, reproducible, but
non-bandwith-wasting example (perhaps by uploadiung data to some web
site) in order to make the Bioconductor folks able help you.
Uwe Ligges
For a small set of data there is no problem, but for a
large set
,(paste(cmeans,num.of.clust,sep=))$cluster)
This is a FAQ: use get()
Uwe Ligges
I only get two columns (the last term has no effect).
Any ideas as to what I am doing wrong?
Thanks a lot!
Costas
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which the code does not intercept with a
nice error message.
Uwe Ligges
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of repeated conditional in a more space-efficient
fashion, something like
subset( data, symptoms==c('a','e','z') )
You are looking for %in%:
subset(data, symptoms %in% c('a','e','z'))
Uwe Ligges
(which is incorrect unless symptoms is, in this case, an integer multiple of
3 long
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