[R] rotating axis / mtext labels

2006-02-08 Thread Iain Gallagher
Hello list. Is it possible to use par(srt=45) to rotate text by 45 degrees along the x-axis of a plot. Using: code x_names-c(C57 Nv, C57 Vacc, 129 Nv, 129 Vacc, IFNgR Nv, IFNgR Vacc) par(srt=45) mtext(font=2, x_names, side=1, line=1, at=l, cex=1.2) par(srt=0) /code doesn't seem to work in R

Re: [R] Reference for R

2006-02-08 Thread IAIN GALLAGHER
Hi Sara. From the R faq here: http://cran.r-project.org/doc/FAQ/R-FAQ.html#Citing-R 2.8 Citing R To cite R in publications, use @Manual{, title= {R: A Language and Environment for Statistical Computing}, author = {{R Development Core

Re: [R] Scientific notation in plots

2006-01-13 Thread IAIN GALLAGHER
try something like this: axis(side=2, at=c(0, 5e+5, 1.5e+6, 2.5e+6), labels=expression(0, 5%*%10^5, 1.5%*%10^6, 2.5%*%10^6) it will place your 5e+5, 1.5e+6, 2.5e+6 as scientific notation at the correct positions on the y axis. the key is the labels=expression part. Cheers iain --- Oddmund

[R] odd error

2005-12-10 Thread IAIN GALLAGHER
Hi All. I am getting a rather odd error using R 2.2.0 on Suse Linux 10. I write R scripts in the text editor Kate and then execute them using e.g source (timecourse_il4.r) in R. I have been moving these scripts between a linux box and a Mac and for that reason have a line quartz(display=,

[R] Dunn's post hoc test

2005-10-17 Thread Iain Gallagher
the average ranks so I could tell at a glance which ones were greater than my critical value I've been looking at loops etc but it's a little beyond me at the moment. Thanks for any suggestions. Iain Gallagher IIIR Edinburgh University __ R-help

Re: [R] Dunn's post hoc test

2005-10-17 Thread IAIN GALLAGHER
be appreciated. Thanks again. Iain Gallagher --- Martin Henry H. Stevens [EMAIL PROTECTED] wrote: I don't know Dunn's rank test, but the following substracts each of the sums of averanks from the next rank. cumsum(averank)[-length(averank)] - averank[-1] Hank On Oct 17, 2005, at 4:30 AM

[R] asking the user for data

2005-10-16 Thread Iain Gallagher
not recognised - maybe I don't have to appropriate libary installed. A pointer to the right one would be appreciated. e.g z -ask(message=Please enter the z value for x) Any help would be gratefully received. Thanks Iain Gallagher Institiute for Infection and Immunology Research Edinburgh University

Re: [R] plot - no main title and missing abscissa value

2005-10-11 Thread Iain Gallagher
Thanks Uwe. The R version I'm using is 2.1.1 on Mac OS 10.3.9 I was going to try and replicate this on a linux system at home but have not had the time so far. I'll let you know how it goes. Iain Uwe Ligges wrote: Iain Gallagher wrote: Hi. Sorry (esp to Uwe for the repeated messages

[R] plot - no main title and missing abscissa value

2005-10-10 Thread Iain Gallagher
Iain -- Iain Gallagher Institute for Infection Immunology Research Ashworth Laboratories Kings Buildings University of Edinburgh Edinburgh EH9 3JT UK (+44) 0131 651 3630 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo

Re: [R] plot - no main title and missing abscissa value

2005-10-10 Thread Iain Gallagher
arrows(x, Ym1sham-Semsham, x, Ym1sham+Semsham, code=3, angle=90, length=0.1)# plot sham error bars legend(20, 60, legend=Implant, pch=1, lty=1, bty=n)# implant legend legend(20, 50, legend=Sham, pch=16, lty=1, bty=n)# sham legend Iain -- Iain Gallagher Institute for Infection Immunology Research

Re: [R] plot - no main title and missing abscissa value

2005-10-10 Thread Iain Gallagher
For anyone who's looked at my previously posted problem I have managed to solve the missing graph title by removing the main=Graph Title call from my plot definition and adding a line defining the graph title as a title call. i.e. from plot(Day, Ym1Imp, ylim=c(0,100), type=b, bty=l, main=Ym1

[R] multiple plots on same x axis

2005-09-27 Thread IAIN GALLAGHER
Hi. I have two vectors of gene expression for each of several days. I want to plot both vectors on the same plot for a visual representation of up versus down regulation. I've tried using add=T but that doesn't work. eg plot(Day, gene1) plot(Day, gene2, add=T) Any help would be appreciated.

[R] horizontal lines on stripchart

2005-09-16 Thread Iain Gallagher
Hi. I would like to add a horizontal line to each column of data on a stripchart (vertical=T) to indicate the mean(rather like the package Prism does - for those that have used this) for each dataset. I presume the best way to do this would be with lines but after much trying / playing about