The following link will take you to a long running discussion on your
topic:
http://tolstoy.newcastle.edu.au/R/help/06/02/21659.html
Chuck
Charles E. White, MS, Senior Biostatistician
Walter Reed Army Institute of Research
503 Robert Grant Ave., Room 1w102
Silver Spring, MD 20910-1557
301
The model becomes nonlinear when you add the natural response rate. In
R, that means that you switch from using the glm function to using the
nls function. As long as you're willing to use logistic regression
instead of Probit analysis, nls has a 'self starting' option (SSLogis)
for a three
I installed the MinGW-5.0.0 compilers today (gcc-3.4.2 is now contained in the
'Current' distribution. When the current compilers failed to compile the
referenced Matrix update and not knowing how to check the exact version numbers
for individual files, I applied the Id.exe and f771.exe fixes
: Douglas Bates [mailto:[EMAIL PROTECTED]
Sent: Friday, January 27, 2006 6:33 PM
To: White, Charles E WRAIR-Wash DC
Subject: Re: lme4_0.995-2/Matrix_0.995-4 upgrade introduces error
messages (change management)
Sorry to hear of the difficulties, Charles.
One thing to try is to turn on the verbose
I'll address two issues. The first is today's error message and the other is
change management for contributed packages on CRAN.
TODAY'S ERROR MESSAGE
I switched from the 0.995-1 versions of lme4 and Matrix to those referenced in
the subject line this afternoon. Prior to using these packages
I recommend that the allowable values for docs be included in the short
help output generated by the command 'rcmd build --help'. The html help
file for build does not contain this information (which is fine since
the HTML help system supports multiple operating systems). I did find
the options I
After downloading from the WA mirror, the lme4 related packages appear
to run fine . Thanks for everyone's help.
Chuck
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide!
I am currently using R 2.1.1 under Windows and I do not seem to be able
to load the current versions of lme4/Matrix. I have run
'update.packages.' I understand this is still experimental software but
I would like access to a working version.
Thanks.
Chuck
R Output:
library(lme4)
Loading
I blew away my existing R directory structure, reinstalled R 2.2.1 from
scratch, downloaded lme4 and associated packages from scratch, tried to
load lme4 and got the same error message. Again, I am using the Windows
version of R on XP.
Chuck
R : Copyright 2005, The R Foundation for Statistical
.
Chuck
-Original Message-
From: Spencer Graves [mailto:[EMAIL PROTECTED]
Sent: Thursday, January 12, 2006 4:08 PM
To: White, Charles E WRAIR-Wash DC
Cc: r-help@stat.math.ethz.ch; Douglas Bates
Subject: Re: [R] CRAN versions of lme4/Matrix don't appear to work with
R 2.1.1
Did
1) It was the Statlib mirror from which I was downloading. If I don't get any
more interesting messages before I return to work in the morning, I'll try
installing off of a different mirror.
2) On general principles, I just updated the lme4 related packages on the SuSE
10 machine that I run at
May be there is a difference between SuSE and OpenSuSE nowadays?!
I exclusively use OpenSuSE now and was under the impression those were
equivalent.
The main difference between SuSE and OpenSuSE is that SuSE contains some
non-GPL software not directly available for OpenSuSE. The most obvious
The rpm for R installed fine on my version of SuSE 10. This is probably
overkill but from the 'selections' page in yast I enabled the c/c++ compiler
and tools then I individually enabled blas and a couple of other things... I
don't remember.
__
Has anyone developed code for reading HL 7 formatted data into R? HL 7
is an open standard for the digital transfer of health care information.
It's moving towards XML but it isn't there yet. A study I started
working on today will be receiving lab data in that format. I'd rather
not reinvent any
The Excel 'database' I am pulling from mixes multiple character
indicators for different kinds of non-numeric results in the same column
as the numeric values. A simple sqlFetch turns all of the character
indicators into NAs. I would like to pull in all of the Excel data as
character so that I can
The link to the search engine at the University of Newcastle, Australia doesn't
seem to be working. Is there someone who can either update the link or indicate
when the service may be back?
Thanks.
Chuck
__
R-help@stat.math.ethz.ch mailing list
It seems nice that R is part of the 'walled garden' of applications
specifically configured to run under Fedora Core 4 (Linux). The gnomeGUI has a
separate installation routine under FC4 and yum tells me it's installed. I've
even found an executable for it in /usr/lib/R/bin/exec. However, as
DC
Cc: John Fox; [EMAIL PROTECTED]; r-help@stat.math.ethz.ch
Subject: Re: [R] R GUI for Linux?
White, Charles E WRAIR-Wash DC wrote:
John:
Thank you for your interest. After more investigation I see that my
problem is with linking tcltk to R. tcl 8.4.7-2 and tk 8.4.7-2 are
tuned to fc3
]
Sent: Tue 5/31/2005 8:57 AM
To: White, Charles E WRAIR-Wash DC
Cc: r-help@stat.math.ethz.ch
Subject: Re: [R] R GUI for Linux?
White, Charles E WRAIR-Wash DC wrote:
Thanks for the tip. I thought that 'Base' files were installed already
but I know better now. Unfortunately, I'm still not up
I feel your pain. grin I am a new Linux user who has spent most of the
weekend trying to get a functional R setup. When I installed Fedora Core 3
(FC3) on my home computer, I thought using R in a terminal would be a snap. I
installed R using the rpm packages and tried to use it with the FC3
for your time.
Chuck
-Original Message-
From: John Fox [mailto:[EMAIL PROTECTED]
Sent: Mon 5/30/2005 4:20 PM
To: White, Charles E WRAIR-Wash DC
Cc: [EMAIL PROTECTED]; r-help@stat.math.ethz.ch
Subject: RE: [R] R GUI for Linux?
Dear Charles,
-Original Message-
From: [EMAIL
The R-devel RPMS has a number of dependencies on Fedora Core development
tools. When the RPMS is installed, the dependencies are resolved by
automatically downloading and installing the latest version of the
development tools. Looking at the README file in the fc3 directory, I
was surprised by
(1) A minor point; the JGR console recognizes when the input panel (think tool
bar) is docked at the top of the screen and acts appropriately. However, the
editor opens under the input panel. I can close the input panel, move the
editor, and open the input panel to continue work. On the other
Long time no see
I'm not sure I can help but I will make a couple of suggestions:
(1) Start R clean, install the new package, exit R normally, restart R
and then try to find the package. I am adding a couple of extra,
undocumented, and generally unnecessary steps in case the programs
My goal is more efficient code for something I anticipate doing a lot.
My example code from my first message works because I insert a seemingly
redundant recording of Dose Treatment in the list generated in the
by command. Since Dose Treatment are already recorded in the
dimensions of the list,
I'm not in your target audience but I consult with and teach to your target audience,
so I'll chime in anyway.
1. Look at the user friendliness of the alternatives you offered to R. I haven't
used SPSS recently or Stata at all but I know SAS is NOT that user friendly. Note that
my institute
It is frustrating to see the labels I want in the dimensions of a list but not be able
to extract those labels into titles for plots generated from component objects. If
someone could set me straight, I would appreciate it. For your amusement, I have
provided an example of the Byzantine code I
It is my understanding that Tcl/Tk does not come with the base installation of R under
OS X ( http://www.sciviews.org/_rgui/projects/TclTk.html). Is there a simple way to
explain how a user with limited tolerance for computer complexity can obtain and
install Tcl/Tk for OS X?
Thanks.
Chuck
1) In general, I would appreciate help in adding functions to the Rcmdr
menu system. I've been able to modify the menus themselves and source test
code but I can't get R functions to execute from the menu. My latest proof
of concept code follows:
Three lines added to Rcmdr-menus.txt:
If you found my subject heading to be confusing then I'm sure you'll enjoy
the example I've included below. I find the apply type functions to be
wonderful for avoiding loops but when I use them with existing functions, I
end up using loops anyway to extract the vectors I want. I would appreciate
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